Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99789 * 2 1 4 4 C 1.38753 * 120.09343 * 0.02562 * 3 2 1 5 5 C 1.37996 * 119.87700 * 180.22220 * 4 3 2 6 6 C 1.38552 * 120.29346 * 359.50826 * 5 4 3 7 7 C 1.38262 * 119.93444 * 0.49359 * 6 5 4 8 8 C 1.38411 * 119.90236 * 359.75064 * 7 6 5 9 9 C 1.51370 * 109.75463 * 179.75448 * 7 6 5 10 10 H 1.09005 * 110.30229 * 258.17554 * 9 7 6 11 11 C 1.50705 * 110.30600 * 136.12662 * 9 7 6 12 12 O 1.21280 * 119.99975 * 266.20806 * 11 9 7 13 13 N 1.34776 * 119.99877 * 86.20462 * 11 9 7 14 14 C 1.46496 * 120.00008 * 5.51327 * 13 11 9 15 15 C 1.46503 * 119.99736 * 185.50768 * 13 11 9 16 16 C 1.50705 * 109.46734 * 90.00494 * 15 13 11 17 17 H 1.07996 * 120.00086 * 0.02562 * 16 15 13 18 18 C 1.37870 * 119.99692 * 179.97438 * 16 15 13 19 19 N 1.31514 * 120.00357 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47023 * 60.00335 * 20 18 16 22 22 H 1.48508 * 109.47176 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47164 * 299.99769 * 20 18 16 24 24 C 1.54343 * 105.17437 * 17.19887 * 9 7 6 25 25 C 1.51387 * 130.32567 * 180.19337 * 6 5 4 26 26 H 1.08999 * 109.47666 * 59.99945 * 1 2 3 27 27 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47347 * 299.99445 * 1 2 3 29 29 H 1.08004 * 120.05997 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.85410 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.91327 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47739 * 94.64286 * 14 13 11 33 33 H 1.09010 * 109.47081 * 214.63783 * 14 13 11 34 34 H 1.09005 * 109.47655 * 334.63311 * 14 13 11 35 35 H 1.09005 * 109.47015 * 210.00094 * 15 13 11 36 36 H 1.08992 * 109.47239 * 330.00573 * 15 13 11 37 37 H 0.97000 * 120.00262 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.82089 * 91.85916 * 24 9 7 39 39 H 1.08997 * 110.82219 * 215.20538 * 24 9 7 40 40 H 1.09002 * 110.30077 * 282.00410 * 25 6 5 41 41 H 1.09004 * 110.30280 * 44.14738 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9232 3.6030 -0.0041 6 6 3.3067 3.6774 0.0010 7 6 4.0600 2.5181 0.0004 8 6 3.4299 1.2857 0.0000 9 6 5.5333 2.8653 0.0004 10 1 5.9495 2.7486 -1.0003 11 6 6.2762 1.9931 0.9796 12 8 6.4680 2.3807 2.1127 13 7 6.7273 0.7824 0.5960 14 6 6.6031 0.3637 -0.8023 15 6 7.3420 -0.1148 1.5775 16 6 6.2794 -0.9864 2.1960 17 1 5.2494 -0.8826 1.8884 18 6 6.6224 -1.9169 3.1537 19 7 7.8770 -2.0443 3.5273 20 14 5.3053 -2.9967 3.9209 21 1 4.6444 -3.7998 2.8609 22 1 5.9283 -3.9063 4.9157 23 1 4.2960 -2.1421 4.5963 24 6 5.6002 4.3428 0.4415 25 6 4.2229 4.8826 0.0015 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.2134 2.3221 0.0005 30 1 1.3360 4.5095 -0.0033 31 1 4.0182 0.3800 0.0000 32 1 7.5265 0.5937 -1.3340 33 1 6.4170 -0.7095 -0.8451 34 1 5.7734 0.8952 -1.2685 35 1 8.0834 -0.7419 1.0823 36 1 7.8264 0.4750 2.3556 37 1 8.1182 -2.6988 4.2014 38 1 5.7191 4.4195 1.5223 39 1 6.4068 4.8648 -0.0732 40 1 4.2863 5.3098 -0.9993 41 1 3.8652 5.6294 0.7103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277325744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -45.676029 kcal Electronic energy + Delta-G solvation = -23489.617382 eV Core-core repulsion = 20141.792238 eV Total energy + Delta-G solvation = -3347.825143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65895 -39.20475 -37.79475 -34.97611 -34.40252 -32.59790 -31.40293 -28.77426 -28.47603 -27.50846 -26.50706 -25.54197 -23.08844 -22.68411 -20.86836 -20.72440 -18.42710 -17.48190 -16.64230 -16.43841 -16.22204 -15.67201 -15.37608 -15.14732 -14.91823 -14.36642 -14.18215 -13.65767 -13.37988 -13.00818 -12.68182 -12.60346 -12.30732 -12.15106 -11.99117 -11.82775 -11.61152 -11.41747 -11.40120 -11.17040 -11.06674 -10.85958 -10.55644 -10.50954 -10.34745 -10.11388 -9.59478 -9.07124 -8.54593 -8.38595 -7.90962 -7.59313 -5.99845 -4.04263 1.39095 1.53187 3.25151 3.36049 3.39345 3.41210 3.47173 3.79471 4.04699 4.49295 4.52163 4.72511 4.88616 5.00365 5.08300 5.11728 5.14851 5.31879 5.34484 5.35621 5.41303 5.48382 5.55905 5.69665 5.71551 5.83111 5.93247 5.97539 6.01196 6.23757 6.26768 6.38445 6.44868 6.45483 6.77170 6.80436 7.10317 7.49338 7.49721 7.58980 7.97184 8.28082 8.45500 8.94521 9.12791 9.60850 11.08209 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.006531 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.295878 B = 4286.116881 C = 5824.990470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.127 3.873 4 C -0.208 4.208 5 C -0.073 4.073 6 C -0.129 4.129 7 C -0.040 4.040 8 C -0.127 4.127 9 C -0.074 4.074 10 H 0.104 0.896 11 C 0.515 3.485 12 O -0.537 6.537 13 N -0.600 5.600 14 C 0.078 3.922 15 C 0.245 3.755 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.108 4.108 25 C -0.073 4.073 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 10.286 -12.236 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.082 3.918 4 C -0.226 4.226 5 C -0.091 4.091 6 C -0.129 4.129 7 C -0.040 4.040 8 C -0.145 4.145 9 C -0.096 4.096 10 H 0.122 0.878 11 C 0.301 3.699 12 O -0.415 6.415 13 N -0.332 5.332 14 C -0.067 4.067 15 C 0.126 3.874 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.146 4.146 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.532 10.151 -11.502 19.192 hybrid contribution -1.064 -0.793 0.399 1.386 sum -12.596 9.358 -11.103 19.222 Atomic orbital electron populations 1.23023 0.78757 1.03807 1.01039 1.86123 1.21012 1.26793 1.88741 1.18768 0.91970 0.84139 0.96953 1.21059 0.99663 0.92158 1.09763 1.20278 0.92947 0.96893 0.98996 1.20473 0.93336 0.95619 1.03478 1.19857 0.94015 0.92516 0.97626 1.20020 0.91489 0.98338 1.04683 1.20956 0.91883 0.96457 1.00266 0.87823 1.20032 0.79518 0.82072 0.88286 1.90637 1.57480 1.72720 1.20632 1.48123 1.59266 1.16118 1.09677 1.21738 1.00180 1.01756 0.82982 1.19291 0.93327 0.87807 0.87001 1.21412 0.94414 1.18474 1.22118 0.92430 1.24908 0.95473 0.97260 0.96335 1.69924 1.16442 1.35569 1.31526 0.86595 0.81825 0.80183 0.79089 1.20160 1.21199 1.20197 1.22308 0.96427 0.92023 1.03832 1.20965 0.93345 0.95215 1.01518 0.92880 0.88359 0.92780 0.85531 0.86084 0.84505 0.93554 0.90822 0.92107 0.95014 0.93737 0.92717 0.88756 0.90395 0.90509 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.85 10.50 -19.43 -0.20 -5.05 16 3 C 0.13 2.02 6.68 -39.26 -0.26 1.75 16 4 C -0.21 -2.74 9.04 -39.48 -0.36 -3.09 16 5 C -0.07 -0.93 10.03 -39.55 -0.40 -1.33 16 6 C -0.13 -1.83 6.14 -104.16 -0.64 -2.46 16 7 C -0.04 -0.65 5.35 -104.22 -0.56 -1.21 16 8 C -0.13 -2.23 9.16 -39.39 -0.36 -2.60 16 9 C -0.07 -1.20 2.32 -91.89 -0.21 -1.41 16 10 H 0.10 1.40 6.68 -51.93 -0.35 1.05 16 11 C 0.52 11.11 6.66 -10.98 -0.07 11.03 16 12 O -0.54 -13.90 15.15 5.56 0.08 -13.81 16 13 N -0.60 -13.09 2.86 -182.94 -0.52 -13.62 16 14 C 0.08 1.29 9.44 59.84 0.57 1.85 16 15 C 0.24 6.56 5.23 -5.19 -0.03 6.53 16 16 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 20 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 24 C -0.11 -1.51 6.50 -25.33 -0.16 -1.67 16 25 C -0.07 -0.86 6.77 -26.85 -0.18 -1.04 16 26 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.13 1.30 6.31 -52.48 -0.33 0.97 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.14 2.64 7.04 -52.49 -0.37 2.27 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.25 8.11 -51.92 -0.42 0.83 16 34 H 0.06 0.87 5.05 -51.93 -0.26 0.60 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.04 1.34 7.35 -51.93 -0.38 0.96 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.09 1.56 6.90 -51.93 -0.36 1.20 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -34.92 336.37 -7.72 -42.65 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.77 Total: -0.15 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.10 Total: -6.21 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.21 Total: -39.99 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.12 Total: -18.87 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.92 -7.72 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277325744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds