Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99789 * 2 1 4 4 C 1.38753 * 120.09343 * 0.02562 * 3 2 1 5 5 C 1.37996 * 119.87700 * 180.22220 * 4 3 2 6 6 C 1.38552 * 120.29346 * 359.50826 * 5 4 3 7 7 C 1.38262 * 119.93444 * 0.49359 * 6 5 4 8 8 C 1.38411 * 119.90236 * 359.75064 * 7 6 5 9 9 C 1.51370 * 109.75463 * 179.75448 * 7 6 5 10 10 H 1.09005 * 110.30229 * 258.17554 * 9 7 6 11 11 C 1.50705 * 110.30600 * 136.12662 * 9 7 6 12 12 O 1.21280 * 119.99975 * 266.20806 * 11 9 7 13 13 N 1.34776 * 119.99877 * 86.20462 * 11 9 7 14 14 C 1.46496 * 120.00008 * 5.51327 * 13 11 9 15 15 C 1.46503 * 119.99736 * 185.50768 * 13 11 9 16 16 C 1.50705 * 109.46734 * 90.00494 * 15 13 11 17 17 H 1.07996 * 120.00086 * 0.02562 * 16 15 13 18 18 C 1.37870 * 119.99692 * 179.97438 * 16 15 13 19 19 N 1.31514 * 120.00357 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47023 * 60.00335 * 20 18 16 22 22 H 1.48508 * 109.47176 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47164 * 299.99769 * 20 18 16 24 24 C 1.54343 * 105.17437 * 17.19887 * 9 7 6 25 25 C 1.51387 * 130.32567 * 180.19337 * 6 5 4 26 26 H 1.08999 * 109.47666 * 59.99945 * 1 2 3 27 27 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47347 * 299.99445 * 1 2 3 29 29 H 1.08004 * 120.05997 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.85410 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.91327 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47739 * 94.64286 * 14 13 11 33 33 H 1.09010 * 109.47081 * 214.63783 * 14 13 11 34 34 H 1.09005 * 109.47655 * 334.63311 * 14 13 11 35 35 H 1.09005 * 109.47015 * 210.00094 * 15 13 11 36 36 H 1.08992 * 109.47239 * 330.00573 * 15 13 11 37 37 H 0.97000 * 120.00262 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.82089 * 91.85916 * 24 9 7 39 39 H 1.08997 * 110.82219 * 215.20538 * 24 9 7 40 40 H 1.09002 * 110.30077 * 282.00410 * 25 6 5 41 41 H 1.09004 * 110.30280 * 44.14738 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9232 3.6030 -0.0041 6 6 3.3067 3.6774 0.0010 7 6 4.0600 2.5181 0.0004 8 6 3.4299 1.2857 0.0000 9 6 5.5333 2.8653 0.0004 10 1 5.9495 2.7486 -1.0003 11 6 6.2762 1.9931 0.9796 12 8 6.4680 2.3807 2.1127 13 7 6.7273 0.7824 0.5960 14 6 6.6031 0.3637 -0.8023 15 6 7.3420 -0.1148 1.5775 16 6 6.2794 -0.9864 2.1960 17 1 5.2494 -0.8826 1.8884 18 6 6.6224 -1.9169 3.1537 19 7 7.8770 -2.0443 3.5273 20 14 5.3053 -2.9967 3.9209 21 1 4.6444 -3.7998 2.8609 22 1 5.9283 -3.9063 4.9157 23 1 4.2960 -2.1421 4.5963 24 6 5.6002 4.3428 0.4415 25 6 4.2229 4.8826 0.0015 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.2134 2.3221 0.0005 30 1 1.3360 4.5095 -0.0033 31 1 4.0182 0.3800 0.0000 32 1 7.5265 0.5937 -1.3340 33 1 6.4170 -0.7095 -0.8451 34 1 5.7734 0.8952 -1.2685 35 1 8.0834 -0.7419 1.0823 36 1 7.8264 0.4750 2.3556 37 1 8.1182 -2.6988 4.2014 38 1 5.7191 4.4195 1.5223 39 1 6.4068 4.8648 -0.0732 40 1 4.2863 5.3098 -0.9993 41 1 3.8652 5.6294 0.7103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277325744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -68.266742 kcal Electronic energy + Delta-G solvation = -23490.596989 eV Core-core repulsion = 20141.792238 eV Total energy + Delta-G solvation = -3348.804750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87649 -40.55134 -39.10527 -36.72061 -35.63288 -34.76070 -32.57020 -30.35077 -29.53381 -28.98368 -27.63578 -27.13536 -25.02490 -23.76884 -22.26044 -21.77446 -19.90592 -18.79582 -18.56097 -18.16569 -17.40690 -16.98305 -16.64823 -16.40071 -16.31280 -16.14470 -15.56168 -15.04641 -14.40697 -14.33189 -14.23936 -13.91191 -13.78395 -13.64171 -13.47200 -13.26649 -13.00833 -12.85770 -12.67614 -12.61980 -12.49235 -12.27458 -12.23784 -12.12590 -11.76410 -11.61826 -11.39284 -10.72368 -10.67794 -9.79158 -9.45600 -8.97773 -8.25886 -6.40229 0.27621 0.43918 1.30815 1.35129 1.42776 1.74734 2.27962 2.34106 2.41547 2.74698 3.03124 3.41699 3.59769 3.79971 3.92730 4.02710 4.18990 4.24801 4.31688 4.35487 4.38642 4.43309 4.51734 4.63786 4.68190 4.69945 4.80100 4.88538 4.96994 4.99843 5.02694 5.14794 5.20398 5.32147 5.35114 5.39005 5.53044 5.66329 5.79164 5.80791 6.03062 6.47395 6.65769 6.74125 7.24292 7.42815 8.81124 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.006531 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.295878 B = 4286.116881 C = 5824.990470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.110 3.890 4 C -0.200 4.200 5 C -0.067 4.067 6 C -0.132 4.132 7 C -0.064 4.064 8 C -0.160 4.160 9 C -0.065 4.065 10 H 0.133 0.867 11 C 0.506 3.494 12 O -0.593 6.593 13 N -0.607 5.607 14 C 0.076 3.924 15 C 0.260 3.740 16 C -0.542 4.542 17 H 0.047 0.953 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.961 3.039 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.281 1.281 24 C -0.109 4.109 25 C -0.063 4.063 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.000 1.000 37 H 0.268 0.732 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 11.850 -13.949 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C 0.065 3.935 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.065 4.065 8 C -0.179 4.179 9 C -0.086 4.086 10 H 0.151 0.849 11 C 0.295 3.705 12 O -0.475 6.475 13 N -0.337 5.337 14 C -0.066 4.066 15 C 0.138 3.862 16 C -0.581 4.581 17 H 0.066 0.934 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.786 3.214 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.207 1.207 24 C -0.146 4.146 25 C -0.099 4.099 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.179 0.821 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.018 0.982 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.246 11.709 -13.270 22.718 hybrid contribution -0.254 -1.289 0.923 1.605 sum -14.500 10.420 -12.347 21.709 Atomic orbital electron populations 1.23356 0.76198 1.05443 1.02537 1.86076 1.23812 1.27217 1.88864 1.18948 0.91678 0.85355 0.97516 1.21444 1.01189 0.91257 1.07956 1.20750 0.92640 0.98160 0.96901 1.20870 0.94278 0.95546 1.02524 1.19953 0.94147 0.93125 0.99228 1.19992 0.92627 0.97760 1.07539 1.21031 0.91314 0.96408 0.99798 0.84901 1.21097 0.78652 0.82090 0.88695 1.90595 1.59466 1.74021 1.23388 1.48131 1.58798 1.15883 1.10899 1.21966 1.02754 1.01565 0.80347 1.18752 0.92837 0.87475 0.87105 1.21629 0.94316 1.19235 1.22881 0.93425 1.25790 0.97786 0.98582 0.96651 1.70032 1.18251 1.36254 1.32001 0.85565 0.78851 0.78417 0.78603 1.18626 1.19688 1.20662 1.22360 0.99379 0.90793 1.02113 1.21004 0.90756 0.94370 1.03813 0.90604 0.86893 0.91865 0.82293 0.82123 0.87749 0.90565 0.91766 0.89496 0.95729 0.98206 0.92290 0.92127 0.87519 0.87050 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.35 -10.60 10.50 -92.43 -0.97 -11.57 16 3 C 0.11 3.44 6.68 22.48 0.15 3.59 16 4 C -0.20 -4.68 9.04 22.34 0.20 -4.48 16 5 C -0.07 -1.44 10.03 22.29 0.22 -1.21 16 6 C -0.13 -3.36 6.14 -19.57 -0.12 -3.48 16 7 C -0.06 -2.06 5.35 -19.60 -0.10 -2.17 16 8 C -0.16 -5.78 9.16 22.40 0.21 -5.57 16 9 C -0.06 -2.05 2.32 -11.62 -0.03 -2.08 16 10 H 0.13 3.31 6.68 -2.38 -0.02 3.29 16 11 C 0.51 22.75 6.66 87.66 0.58 23.33 16 12 O -0.59 -32.68 15.15 -3.03 -0.05 -32.73 16 13 N -0.61 -27.72 2.86 -851.10 -2.43 -30.15 16 14 C 0.08 2.55 9.44 127.77 1.21 3.75 16 15 C 0.26 14.80 5.23 85.63 0.45 15.25 16 16 C -0.54 -33.01 9.39 25.60 0.24 -32.77 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.93 -57.83 13.29 21.44 0.28 -57.54 16 20 Si 0.96 47.22 29.54 68.60 2.03 49.24 16 21 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 24 C -0.11 -2.86 6.50 31.50 0.20 -2.65 16 25 C -0.06 -1.23 6.77 30.52 0.21 -1.03 16 26 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 27 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 29 H 0.16 2.58 6.31 -2.91 -0.02 2.56 16 30 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.10 4.31 7.04 -2.91 -0.02 4.29 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.26 8.11 -2.38 -0.02 2.24 16 34 H 0.09 2.45 5.05 -2.38 -0.01 2.44 16 35 H 0.02 1.41 8.07 -2.38 -0.02 1.39 16 36 H 0.00 -0.01 7.35 -2.39 -0.02 -0.03 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.06 2.03 6.90 -2.39 -0.02 2.01 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -82.21 336.37 4.89 -77.32 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.03 Total: 12.37 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 4.99 Total: -6.94 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -2.15 Total: -87.70 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.02 Total: -44.29 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -82.21 4.89 -77.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277325744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.052 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds