Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 117.00387 * 2 1 4 4 C 1.39019 * 119.91049 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.08959 * 180.02562 * 4 3 2 6 6 C 1.39756 * 119.91033 * 359.97438 * 5 4 3 7 7 C 1.47604 * 120.08823 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99739 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99933 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46725 * 60.00489 * 16 14 12 18 18 H 1.48505 * 109.46988 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47116 * 300.00464 * 16 14 12 20 20 C 1.39712 * 119.82313 * 0.27465 * 6 5 4 21 21 C 1.37724 * 119.91150 * 359.45133 * 20 6 5 22 22 C 1.50703 * 119.95843 * 180.29494 * 21 20 6 23 23 C 1.53005 * 117.49517 * 9.00086 * 22 21 20 24 24 C 1.53001 * 117.49740 * 300.34475 * 22 21 20 25 25 H 1.09004 * 109.46764 * 299.99813 * 1 2 3 26 26 H 1.09004 * 109.47278 * 59.98868 * 1 2 3 27 27 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.95751 * 0.03703 * 4 3 2 29 29 H 1.07996 * 120.04399 * 179.97438 * 5 4 3 30 30 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 32 32 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 33 33 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 35 35 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.04182 * 179.71941 * 20 6 5 37 37 H 1.08995 * 115.55174 * 154.67059 * 22 21 20 38 38 H 1.08995 * 117.49866 * 359.97438 * 23 22 21 39 39 H 1.09003 * 117.49646 * 145.02409 * 23 22 21 40 40 H 1.08995 * 117.49918 * 214.98004 * 24 22 21 41 41 H 1.09005 * 117.49593 * 359.96952 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6026 0.0000 6 6 3.3031 3.6778 -0.0005 7 6 3.9732 4.9929 -0.0005 8 8 5.1874 5.0564 -0.0015 9 7 3.2392 6.1233 0.0005 10 6 3.9044 7.4286 -0.0001 11 6 2.8507 8.5379 0.0020 12 6 3.5349 9.8806 0.0021 13 1 4.6134 9.9370 0.0003 14 6 2.7840 11.0370 0.0032 15 7 1.4707 10.9682 0.0048 16 14 3.6322 12.7014 0.0040 17 1 4.4800 12.8254 -1.2089 18 1 2.6094 13.7781 0.0059 19 1 4.4813 12.8236 1.2161 20 6 4.0621 2.5049 -0.0063 21 6 3.4331 1.2797 -0.0001 22 6 4.2509 0.0138 0.0004 23 6 5.7610 0.1485 0.2061 24 6 5.2053 -0.2110 -1.1741 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2079 2.3150 0.0016 29 1 1.3173 4.5069 0.0000 30 1 2.2706 6.0725 0.0009 31 1 4.5262 7.5192 -0.8907 32 1 4.5282 7.5188 0.8893 33 1 2.2265 8.4478 -0.8871 34 1 2.2293 8.4471 0.8928 35 1 0.9424 11.7817 0.0053 36 1 5.1408 2.5589 -0.0114 37 1 3.7611 -0.8621 0.4257 38 1 6.1630 1.1527 0.3407 39 1 6.2648 -0.6391 0.7665 40 1 5.3437 -1.2349 -1.5212 41 1 5.2413 0.5565 -1.9474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277850066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = -35.019576 kcal Electronic energy + Delta-G solvation = -21864.288510 eV Core-core repulsion = 18516.925466 eV Total energy + Delta-G solvation = -3347.363045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73626 -39.21629 -37.95473 -36.41193 -34.89487 -32.88911 -31.12491 -30.62380 -29.39248 -27.61354 -25.00987 -24.11389 -23.14116 -22.45590 -20.99453 -20.93066 -19.79879 -18.42134 -17.20100 -16.84642 -16.32656 -16.05401 -15.38071 -15.07040 -14.87849 -14.71465 -14.56851 -14.44545 -13.72809 -13.42427 -13.28560 -12.96556 -12.72159 -12.32600 -12.27177 -11.94286 -11.58061 -11.31655 -11.23075 -11.07016 -11.02479 -10.87258 -10.66262 -10.49599 -10.32760 -9.85473 -9.49257 -9.23436 -8.98174 -8.58306 -8.40551 -8.19325 -6.09850 -4.12692 0.86485 1.12462 2.94269 2.96863 3.31226 3.34863 3.37882 3.64715 3.70432 3.98604 4.27934 4.41568 4.52801 4.69379 4.80685 4.83419 4.86003 4.90072 5.02081 5.10275 5.16037 5.18292 5.27224 5.39865 5.50617 5.66495 5.77060 5.86364 5.96409 6.07835 6.14309 6.25313 6.34923 6.41545 6.50284 6.73411 6.90280 7.08553 7.50715 7.60716 7.88228 8.00295 8.27244 8.63469 8.93011 9.52118 11.01784 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.002888 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.574279 B = 9694.038954 C =10694.012231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.152 3.848 4 C -0.213 4.213 5 C -0.049 4.049 6 C -0.160 4.160 7 C 0.552 3.448 8 O -0.550 6.550 9 N -0.717 5.717 10 C 0.121 3.879 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.027 4.027 21 C -0.095 4.095 22 C -0.105 4.105 23 C -0.179 4.179 24 C -0.171 4.171 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.396 0.604 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.144 0.856 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -24.505 -0.299 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.106 3.894 4 C -0.231 4.231 5 C -0.068 4.068 6 C -0.164 4.164 7 C 0.338 3.662 8 O -0.430 6.430 9 N -0.367 5.367 10 C -0.001 4.001 11 C -0.025 4.025 12 C -0.561 4.561 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.046 4.046 21 C -0.095 4.095 22 C -0.123 4.123 23 C -0.216 4.216 24 C -0.207 4.207 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.231 0.769 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.541 -24.494 -0.299 24.545 hybrid contribution -0.561 1.154 0.012 1.283 sum -2.102 -23.341 -0.287 23.437 Atomic orbital electron populations 1.23113 0.78231 1.04036 1.01681 1.86027 1.21441 1.26802 1.88079 1.18957 0.91451 0.84255 0.94692 1.21135 1.00246 0.91853 1.09903 1.21176 0.93486 0.97664 0.94448 1.19984 0.93559 0.94016 1.08803 1.18142 0.87023 0.83987 0.77013 1.90739 1.13564 1.87638 1.51020 1.46260 1.10252 1.06722 1.73460 1.21757 0.97141 0.80216 1.00952 1.19325 0.93643 0.91691 0.97837 1.21017 0.93256 0.90361 1.51454 0.92254 1.24992 0.94844 0.99460 0.94959 1.69940 1.04469 1.28628 1.50328 0.86566 0.79126 0.83006 0.78804 1.20090 1.21242 1.20093 1.20990 1.00823 0.89446 0.93292 1.18378 0.89862 0.94107 1.07177 1.20763 0.90818 0.96571 1.04109 1.23140 0.95136 1.03537 0.99788 1.23049 1.03136 1.02743 0.91818 0.92397 0.92388 0.88179 0.84737 0.84922 0.76942 0.92392 0.92385 0.95934 0.95926 0.92783 0.83889 0.86618 0.88029 0.88398 0.88552 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.07 9.65 -18.82 -0.18 -3.25 16 3 C 0.15 1.73 6.67 -39.02 -0.26 1.47 16 4 C -0.21 -2.25 9.01 -39.49 -0.36 -2.61 16 5 C -0.05 -0.59 9.53 -39.22 -0.37 -0.97 16 6 C -0.16 -2.35 5.87 -104.96 -0.62 -2.97 16 7 C 0.55 10.00 7.76 -12.44 -0.10 9.91 16 8 O -0.55 -11.76 16.34 5.29 0.09 -11.67 16 9 N -0.72 -12.97 5.51 -61.33 -0.34 -13.31 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.03 -0.37 8.83 -39.22 -0.35 -0.71 16 21 C -0.09 -1.14 5.62 -104.54 -0.59 -1.73 16 22 C -0.10 -1.07 5.74 -91.77 -0.53 -1.60 16 23 C -0.18 -1.66 9.86 -26.69 -0.26 -1.92 16 24 C -0.17 -1.56 10.16 -26.69 -0.27 -1.83 16 25 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 26 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.13 1.06 6.28 -52.49 -0.33 0.73 16 29 H 0.13 1.40 6.40 -52.49 -0.34 1.06 16 30 H 0.40 6.16 6.49 -40.82 -0.27 5.89 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 1.97 5.60 -52.48 -0.29 1.68 16 37 H 0.12 1.12 7.76 -51.93 -0.40 0.72 16 38 H 0.10 1.02 6.18 -51.93 -0.32 0.70 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -32.46 344.97 -8.47 -40.93 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.67 Total: 3.42 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -3.28 Total: -12.33 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.40 Total: -38.68 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.10 Total: -14.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.46 -8.47 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277850066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds