Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 117.00387 * 2 1 4 4 C 1.39019 * 119.91049 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.08959 * 180.02562 * 4 3 2 6 6 C 1.39756 * 119.91033 * 359.97438 * 5 4 3 7 7 C 1.47604 * 120.08823 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99739 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99933 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46725 * 60.00489 * 16 14 12 18 18 H 1.48505 * 109.46988 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47116 * 300.00464 * 16 14 12 20 20 C 1.39712 * 119.82313 * 0.27465 * 6 5 4 21 21 C 1.37724 * 119.91150 * 359.45133 * 20 6 5 22 22 C 1.50703 * 119.95843 * 180.29494 * 21 20 6 23 23 C 1.53005 * 117.49517 * 9.00086 * 22 21 20 24 24 C 1.53001 * 117.49740 * 300.34475 * 22 21 20 25 25 H 1.09004 * 109.46764 * 299.99813 * 1 2 3 26 26 H 1.09004 * 109.47278 * 59.98868 * 1 2 3 27 27 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.95751 * 0.03703 * 4 3 2 29 29 H 1.07996 * 120.04399 * 179.97438 * 5 4 3 30 30 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 32 32 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 33 33 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 35 35 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.04182 * 179.71941 * 20 6 5 37 37 H 1.08995 * 115.55174 * 154.67059 * 22 21 20 38 38 H 1.08995 * 117.49866 * 359.97438 * 23 22 21 39 39 H 1.09003 * 117.49646 * 145.02409 * 23 22 21 40 40 H 1.08995 * 117.49918 * 214.98004 * 24 22 21 41 41 H 1.09005 * 117.49593 * 359.96952 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6026 0.0000 6 6 3.3031 3.6778 -0.0005 7 6 3.9732 4.9929 -0.0005 8 8 5.1874 5.0564 -0.0015 9 7 3.2392 6.1233 0.0005 10 6 3.9044 7.4286 -0.0001 11 6 2.8507 8.5379 0.0020 12 6 3.5349 9.8806 0.0021 13 1 4.6134 9.9370 0.0003 14 6 2.7840 11.0370 0.0032 15 7 1.4707 10.9682 0.0048 16 14 3.6322 12.7014 0.0040 17 1 4.4800 12.8254 -1.2089 18 1 2.6094 13.7781 0.0059 19 1 4.4813 12.8236 1.2161 20 6 4.0621 2.5049 -0.0063 21 6 3.4331 1.2797 -0.0001 22 6 4.2509 0.0138 0.0004 23 6 5.7610 0.1485 0.2061 24 6 5.2053 -0.2110 -1.1741 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2079 2.3150 0.0016 29 1 1.3173 4.5069 0.0000 30 1 2.2706 6.0725 0.0009 31 1 4.5262 7.5192 -0.8907 32 1 4.5282 7.5188 0.8893 33 1 2.2265 8.4478 -0.8871 34 1 2.2293 8.4471 0.8928 35 1 0.9424 11.7817 0.0053 36 1 5.1408 2.5589 -0.0114 37 1 3.7611 -0.8621 0.4257 38 1 6.1630 1.1527 0.3407 39 1 6.2648 -0.6391 0.7665 40 1 5.3437 -1.2349 -1.5212 41 1 5.2413 0.5565 -1.9474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277850066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = -54.624826 kcal Electronic energy + Delta-G solvation = -21865.138658 eV Core-core repulsion = 18516.925466 eV Total energy + Delta-G solvation = -3348.213192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69086 -40.50136 -38.78806 -37.33185 -36.64537 -34.85973 -32.32999 -31.66467 -30.92339 -28.32353 -26.80784 -25.00331 -24.39412 -23.26631 -22.77808 -21.90495 -21.01837 -19.26210 -18.63641 -18.29193 -17.68807 -16.76031 -16.54067 -16.48910 -16.45016 -16.17388 -15.55304 -15.40263 -14.92713 -14.78613 -14.59238 -14.26890 -13.93488 -13.68544 -13.24226 -12.93746 -12.91306 -12.83413 -12.55214 -12.31004 -12.26678 -12.02123 -11.87550 -11.70697 -11.69124 -11.48976 -11.25075 -10.97579 -10.60678 -10.11738 -9.88691 -9.15905 -8.24524 -6.35006 -0.17533 0.20113 1.41764 1.44079 1.52016 1.76562 2.18600 2.27303 2.44290 2.65880 3.10220 3.10581 3.46544 3.69199 3.73886 3.96353 4.02467 4.10854 4.19711 4.32260 4.41351 4.43986 4.44402 4.47204 4.51952 4.76695 4.79015 4.82548 4.85614 4.98132 5.02994 5.16424 5.22506 5.24533 5.25875 5.39328 5.47082 5.56635 5.58197 5.77450 6.15149 6.31612 6.56838 6.77548 7.19186 7.34179 8.87198 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.002888 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.574279 B = 9694.038954 C =10694.012231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.159 3.841 4 C -0.207 4.207 5 C -0.046 4.046 6 C -0.185 4.185 7 C 0.552 3.448 8 O -0.590 6.590 9 N -0.712 5.712 10 C 0.140 3.860 11 C 0.024 3.976 12 C -0.549 4.549 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.965 3.035 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.269 1.269 20 C -0.035 4.035 21 C -0.103 4.103 22 C -0.113 4.113 23 C -0.180 4.180 24 C -0.165 4.165 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.409 0.591 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 -25.844 -0.311 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.230 6.230 3 C 0.112 3.888 4 C -0.225 4.225 5 C -0.065 4.065 6 C -0.188 4.188 7 C 0.342 3.658 8 O -0.473 6.473 9 N -0.363 5.363 10 C 0.017 3.983 11 C -0.014 4.014 12 C -0.587 4.587 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.054 4.054 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.216 4.216 24 C -0.202 4.202 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.185 0.815 29 H 0.165 0.835 30 H 0.246 0.754 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.665 -25.859 -0.312 25.998 hybrid contribution -0.316 1.418 0.014 1.453 sum -2.981 -24.441 -0.298 24.623 Atomic orbital electron populations 1.23468 0.76014 1.05994 1.02681 1.86034 1.23678 1.25890 1.87430 1.19089 0.91348 0.85188 0.93136 1.21438 1.01814 0.90768 1.08511 1.21337 0.92342 0.99111 0.93693 1.19727 0.94737 0.92089 1.12237 1.18664 0.86598 0.84974 0.75597 1.90705 1.15377 1.88284 1.52892 1.46042 1.10915 1.05618 1.73693 1.21279 0.95988 0.81106 0.99975 1.19130 0.93785 0.92004 0.96468 1.21439 0.93579 0.91956 1.51770 0.92317 1.25858 0.95519 1.03334 0.94347 1.70042 1.05783 1.29825 1.50866 0.85506 0.78210 0.78263 0.79121 1.19362 1.20488 1.19374 1.20946 1.00438 0.89997 0.93990 1.18555 0.90826 0.94088 1.06940 1.20822 0.91064 0.96043 1.05137 1.23184 0.94700 1.03455 1.00292 1.23103 1.02228 1.03524 0.91336 0.91322 0.91356 0.85953 0.81531 0.83502 0.75393 0.93395 0.93399 0.97163 0.97163 0.92484 0.85004 0.85725 0.89419 0.86563 0.86536 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.39 9.65 -90.27 -0.87 -6.26 16 3 C 0.16 3.28 6.67 22.63 0.15 3.43 16 4 C -0.21 -3.87 9.01 22.33 0.20 -3.67 16 5 C -0.05 -1.06 9.53 22.51 0.21 -0.85 16 6 C -0.18 -5.47 5.87 -20.08 -0.12 -5.59 16 7 C 0.55 20.62 7.76 86.72 0.67 21.29 16 8 O -0.59 -26.33 16.34 -3.97 -0.06 -26.40 16 9 N -0.71 -26.26 5.51 -466.20 -2.57 -28.82 16 10 C 0.14 6.22 5.61 86.38 0.48 6.70 16 11 C 0.02 1.20 5.09 29.85 0.15 1.35 16 12 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.01 0.47 5.46 84.66 0.46 0.93 16 15 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 16 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C -0.03 -0.97 8.83 22.50 0.20 -0.77 16 21 C -0.10 -2.42 5.62 -19.81 -0.11 -2.53 16 22 C -0.11 -2.18 5.74 -11.54 -0.07 -2.25 16 23 C -0.18 -3.22 9.86 30.62 0.30 -2.92 16 24 C -0.17 -2.85 10.16 30.62 0.31 -2.54 16 25 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 26 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 27 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.17 1.99 6.28 -2.91 -0.02 1.97 16 29 H 0.15 2.86 6.40 -2.91 -0.02 2.84 16 30 H 0.41 12.75 6.49 -92.71 -0.60 12.15 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.13 3.87 5.60 -2.91 -0.02 3.86 16 37 H 0.12 2.18 7.76 -2.39 -0.02 2.16 16 38 H 0.09 1.83 6.18 -2.39 -0.01 1.81 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -70.30 344.97 3.46 -66.85 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.45 Total: 19.67 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.20 Total: -16.86 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.28 Total: -82.75 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.94 Total: -32.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.30 3.46 -66.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277850066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.222 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds