Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00348 * 2 1 4 4 C 1.38758 * 120.09001 * 359.97438 * 3 2 1 5 5 C 1.38006 * 119.87673 * 179.97438 * 4 3 2 6 6 C 1.38540 * 120.29187 * 359.97438 * 5 4 3 7 7 C 1.38255 * 119.94023 * 0.02562 * 6 5 4 8 8 C 1.38417 * 119.90350 * 359.97438 * 7 6 5 9 9 C 1.51380 * 109.75735 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.38119 * 258.22949 * 9 7 6 11 11 C 1.50709 * 110.29973 * 136.12141 * 9 7 6 12 12 O 1.21283 * 119.99605 * 244.24872 * 11 9 7 13 13 N 1.34774 * 119.99694 * 64.25690 * 11 9 7 14 14 C 1.46499 * 119.99486 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.54334 * 105.16929 * 17.19838 * 9 7 6 25 25 C 1.51393 * 130.31886 * 180.02562 * 6 5 4 26 26 H 1.08999 * 109.46861 * 60.00414 * 1 2 3 27 27 H 1.09001 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47542 * 300.00221 * 1 2 3 29 29 H 1.07998 * 120.05698 * 359.95844 * 4 3 2 30 30 H 1.07999 * 119.85245 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.91408 * 179.97438 * 8 7 6 32 32 H 0.96991 * 120.00732 * 359.97438 * 13 11 9 33 33 H 1.09000 * 109.47602 * 59.99571 * 14 13 11 34 34 H 1.08998 * 109.47492 * 299.99559 * 14 13 11 35 35 H 1.08994 * 109.47074 * 60.00190 * 15 14 13 36 36 H 1.08998 * 109.47285 * 300.00026 * 15 14 13 37 37 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 38 38 H 1.09004 * 110.82242 * 91.86109 * 24 9 7 39 39 H 1.09007 * 110.81724 * 215.20623 * 24 9 7 40 40 H 1.08999 * 110.30393 * 43.87881 * 25 6 5 41 41 H 1.08997 * 110.38823 * 281.76350 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2921 2.3757 -0.0005 5 6 1.9233 3.6030 0.0000 6 6 3.3067 3.6773 0.0016 7 6 4.0600 2.5180 0.0021 8 6 3.4299 1.2856 0.0016 9 6 5.5335 2.8652 0.0046 10 1 5.9523 2.7499 -0.9951 11 6 6.2746 1.9929 0.9850 12 8 6.8119 2.4891 1.9524 13 7 6.3403 0.6614 0.7865 14 6 7.0612 -0.1864 1.7392 15 6 6.9830 -1.6452 1.2844 16 6 7.7251 -2.5172 2.2642 17 1 8.2042 -2.0752 3.1253 18 6 7.7925 -3.8793 2.0612 19 7 7.2096 -4.4174 1.0123 20 14 8.7118 -4.9604 3.2760 21 1 8.6360 -6.3762 2.8345 22 1 10.1335 -4.5362 3.3386 23 1 8.0959 -4.8282 4.6208 24 6 5.5996 4.3426 0.4459 25 6 4.2230 4.8825 0.0030 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2135 2.3220 -0.0016 30 1 1.3362 4.5095 -0.0008 31 1 4.0182 0.3799 0.0016 32 1 5.9104 0.2645 0.0129 33 1 6.6093 -0.0892 2.7264 34 1 8.1048 0.1248 1.7852 35 1 7.4348 -1.7427 0.2973 36 1 5.9394 -1.9562 1.2387 37 1 6.7319 -3.8561 0.3816 38 1 5.7167 4.4192 1.5269 39 1 6.4071 4.8645 -0.0676 40 1 3.8645 5.6293 0.7114 41 1 4.2881 5.3111 -0.9970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278143114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = -67.070642 kcal Electronic energy + Delta-G solvation = -22569.511887 eV Core-core repulsion = 19220.759003 eV Total energy + Delta-G solvation = -3348.752883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90992 -39.47381 -38.12074 -35.26053 -34.61630 -33.13177 -31.72075 -29.61042 -28.73696 -28.26894 -26.68628 -24.29973 -22.95049 -22.04933 -21.16941 -20.81333 -19.84789 -17.91284 -17.23589 -16.59315 -16.34995 -15.86075 -15.55467 -15.47603 -15.25040 -14.60696 -14.20861 -13.71448 -13.62529 -13.52138 -13.29139 -12.82877 -12.73219 -12.36741 -12.15823 -11.87147 -11.73534 -11.68061 -11.49305 -11.41437 -10.96009 -10.80615 -10.66312 -10.41387 -10.16803 -9.96163 -9.67090 -8.92503 -8.64772 -8.55175 -8.34437 -8.14862 -6.41442 -4.11263 1.12683 1.28559 2.89059 3.12533 3.43957 3.46377 3.49993 3.64869 3.69378 4.27434 4.40853 4.53668 4.66839 4.77989 4.90786 4.95638 4.98168 5.04863 5.10738 5.27620 5.30147 5.32303 5.36768 5.47723 5.58403 5.69168 5.79948 5.97967 6.13094 6.16928 6.21043 6.21999 6.25082 6.49014 6.55225 6.62708 6.82288 7.26777 7.27116 7.37550 7.92414 8.11218 8.40403 8.57295 8.82362 9.60662 10.99609 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.004111 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.355376 B = 6809.608292 C = 8377.938748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.130 3.870 4 C -0.205 4.205 5 C -0.069 4.069 6 C -0.127 4.127 7 C -0.051 4.051 8 C -0.134 4.134 9 C -0.072 4.072 10 H 0.113 0.887 11 C 0.515 3.485 12 O -0.544 6.544 13 N -0.722 5.722 14 C 0.128 3.872 15 C -0.001 4.001 16 C -0.602 4.602 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.910 5.910 20 Si 1.071 2.929 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.104 4.104 25 C -0.076 4.076 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.395 0.605 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.013 0.987 36 H 0.014 0.986 37 H 0.268 0.732 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 16.873 -6.103 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.085 3.915 4 C -0.224 4.224 5 C -0.087 4.087 6 C -0.128 4.128 7 C -0.051 4.051 8 C -0.152 4.152 9 C -0.093 4.093 10 H 0.131 0.869 11 C 0.300 3.700 12 O -0.422 6.422 13 N -0.372 5.372 14 C 0.006 3.994 15 C -0.038 4.038 16 C -0.641 4.641 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.546 5.546 20 Si 0.899 3.101 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.141 4.141 25 C -0.113 4.113 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.230 0.770 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.542 15.432 -5.067 20.521 hybrid contribution -1.015 1.376 -0.759 1.870 sum -13.557 16.807 -5.826 22.366 Atomic orbital electron populations 1.23063 0.78391 1.04109 1.01123 1.86131 1.21320 1.26567 1.88550 1.18766 0.91915 0.84334 0.96469 1.21119 0.99906 0.92085 1.09299 1.20335 0.92963 0.97050 0.98393 1.20455 0.93369 0.95550 1.03401 1.19933 0.94140 0.92706 0.98338 1.19916 0.91641 0.97813 1.05858 1.20955 0.91512 0.96542 1.00294 0.86913 1.20283 0.80373 0.82915 0.86404 1.90659 1.47126 1.73850 1.30614 1.46442 1.55199 1.06858 1.28700 1.21575 0.95224 0.91208 0.91385 1.19454 0.97257 0.89710 0.97389 1.21875 1.37291 0.94184 1.10711 0.92918 1.25871 0.96929 0.96442 0.99402 1.70799 1.32355 1.39296 1.12104 0.83513 0.75812 0.75953 0.74848 1.20730 1.21331 1.21342 1.22262 0.96599 0.91619 1.03654 1.21008 0.93193 0.95242 1.01870 0.92741 0.88094 0.92689 0.85272 0.85857 0.84993 0.77017 0.92398 0.92337 0.96872 0.96791 0.92154 0.88943 0.90031 0.90564 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.19 10.50 -19.40 -0.20 -4.39 16 3 C 0.13 1.75 6.68 -39.26 -0.26 1.49 16 4 C -0.21 -2.25 9.04 -39.47 -0.36 -2.61 16 5 C -0.07 -0.73 10.03 -39.55 -0.40 -1.12 16 6 C -0.13 -1.49 6.14 -104.16 -0.64 -2.12 16 7 C -0.05 -0.68 5.59 -104.22 -0.58 -1.26 16 8 C -0.13 -1.93 9.46 -39.38 -0.37 -2.30 16 9 C -0.07 -0.95 3.26 -91.89 -0.30 -1.25 16 10 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.52 9.02 7.09 -10.98 -0.08 8.94 16 12 O -0.54 -11.38 15.49 5.55 0.09 -11.30 16 13 N -0.72 -13.13 5.01 -60.29 -0.30 -13.43 16 14 C 0.13 2.84 5.61 -4.04 -0.02 2.82 16 15 C 0.00 -0.02 4.40 -27.88 -0.12 -0.14 16 16 C -0.60 -17.22 9.11 -34.44 -0.31 -17.54 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 19 N -0.91 -27.66 13.65 55.43 0.76 -26.91 16 20 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.10 -1.18 6.35 -25.32 -0.16 -1.34 16 25 C -0.08 -0.72 6.77 -26.83 -0.18 -0.90 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 29 H 0.13 1.07 6.31 -52.49 -0.33 0.74 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 2.00 6.11 -52.49 -0.32 1.67 16 32 H 0.40 6.39 6.74 -40.82 -0.28 6.11 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 36 H 0.01 0.36 8.01 -51.93 -0.42 -0.05 16 37 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 38 H 0.09 1.25 7.02 -51.93 -0.36 0.89 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -34.08 338.21 -8.34 -42.42 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.80 Total: 3.90 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.90 Total: -15.69 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.45 Total: -40.33 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.12 Total: -15.69 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.08 -8.34 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278143114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.652 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds