Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00348 * 2 1 4 4 C 1.38758 * 120.09001 * 359.97438 * 3 2 1 5 5 C 1.38006 * 119.87673 * 179.97438 * 4 3 2 6 6 C 1.38540 * 120.29187 * 359.97438 * 5 4 3 7 7 C 1.38255 * 119.94023 * 0.02562 * 6 5 4 8 8 C 1.38417 * 119.90350 * 359.97438 * 7 6 5 9 9 C 1.51380 * 109.75735 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.38119 * 258.22949 * 9 7 6 11 11 C 1.50709 * 110.29973 * 136.12141 * 9 7 6 12 12 O 1.21283 * 119.99605 * 244.24872 * 11 9 7 13 13 N 1.34774 * 119.99694 * 64.25690 * 11 9 7 14 14 C 1.46499 * 119.99486 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.54334 * 105.16929 * 17.19838 * 9 7 6 25 25 C 1.51393 * 130.31886 * 180.02562 * 6 5 4 26 26 H 1.08999 * 109.46861 * 60.00414 * 1 2 3 27 27 H 1.09001 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47542 * 300.00221 * 1 2 3 29 29 H 1.07998 * 120.05698 * 359.95844 * 4 3 2 30 30 H 1.07999 * 119.85245 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.91408 * 179.97438 * 8 7 6 32 32 H 0.96991 * 120.00732 * 359.97438 * 13 11 9 33 33 H 1.09000 * 109.47602 * 59.99571 * 14 13 11 34 34 H 1.08998 * 109.47492 * 299.99559 * 14 13 11 35 35 H 1.08994 * 109.47074 * 60.00190 * 15 14 13 36 36 H 1.08998 * 109.47285 * 300.00026 * 15 14 13 37 37 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 38 38 H 1.09004 * 110.82242 * 91.86109 * 24 9 7 39 39 H 1.09007 * 110.81724 * 215.20623 * 24 9 7 40 40 H 1.08999 * 110.30393 * 43.87881 * 25 6 5 41 41 H 1.08997 * 110.38823 * 281.76350 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2921 2.3757 -0.0005 5 6 1.9233 3.6030 0.0000 6 6 3.3067 3.6773 0.0016 7 6 4.0600 2.5180 0.0021 8 6 3.4299 1.2856 0.0016 9 6 5.5335 2.8652 0.0046 10 1 5.9523 2.7499 -0.9951 11 6 6.2746 1.9929 0.9850 12 8 6.8119 2.4891 1.9524 13 7 6.3403 0.6614 0.7865 14 6 7.0612 -0.1864 1.7392 15 6 6.9830 -1.6452 1.2844 16 6 7.7251 -2.5172 2.2642 17 1 8.2042 -2.0752 3.1253 18 6 7.7925 -3.8793 2.0612 19 7 7.2096 -4.4174 1.0123 20 14 8.7118 -4.9604 3.2760 21 1 8.6360 -6.3762 2.8345 22 1 10.1335 -4.5362 3.3386 23 1 8.0959 -4.8282 4.6208 24 6 5.5996 4.3426 0.4459 25 6 4.2230 4.8825 0.0030 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2135 2.3220 -0.0016 30 1 1.3362 4.5095 -0.0008 31 1 4.0182 0.3799 0.0016 32 1 5.9104 0.2645 0.0129 33 1 6.6093 -0.0892 2.7264 34 1 8.1048 0.1248 1.7852 35 1 7.4348 -1.7427 0.2973 36 1 5.9394 -1.9562 1.2387 37 1 6.7319 -3.8561 0.3816 38 1 5.7167 4.4192 1.5269 39 1 6.4071 4.8645 -0.0676 40 1 3.8645 5.6293 0.7114 41 1 4.2881 5.3111 -0.9970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278143114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = -88.745761 kcal Electronic energy + Delta-G solvation = -22570.451791 eV Core-core repulsion = 19220.759003 eV Total energy + Delta-G solvation = -3349.692787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93829 -40.64521 -39.21766 -36.96041 -35.67979 -35.11098 -32.77892 -31.31891 -29.66431 -29.28625 -27.57805 -26.27344 -23.86497 -23.71146 -22.61851 -21.76600 -21.12835 -19.13901 -18.72067 -18.19544 -17.39430 -16.92470 -16.73557 -16.65208 -16.38451 -15.98643 -15.65909 -15.44233 -14.87096 -14.57487 -14.47325 -14.22370 -13.84426 -13.74590 -13.66131 -13.12308 -12.93656 -12.71955 -12.56078 -12.45834 -12.32175 -12.22007 -12.13033 -11.89449 -11.68694 -11.48074 -11.20433 -10.75446 -10.60768 -10.17074 -9.87989 -9.04093 -8.74978 -6.46215 0.20438 0.37822 1.50761 1.52428 1.60543 1.80528 2.14456 2.29048 2.55461 2.67907 3.10952 3.36024 3.46625 3.71037 3.89248 3.98373 4.16139 4.18264 4.25664 4.27195 4.30610 4.36222 4.38322 4.45593 4.61342 4.65028 4.68494 4.72869 4.95952 4.98190 5.02362 5.10009 5.25603 5.26973 5.27777 5.33572 5.36773 5.58379 5.72638 5.89481 6.09924 6.40605 6.42104 6.53199 7.11077 7.34614 8.66827 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.004111 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.355376 B = 6809.608292 C = 8377.938748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.111 3.889 4 C -0.199 4.199 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.070 4.070 8 C -0.163 4.163 9 C -0.065 4.065 10 H 0.137 0.863 11 C 0.513 3.487 12 O -0.581 6.581 13 N -0.719 5.719 14 C 0.147 3.853 15 C 0.008 3.992 16 C -0.624 4.624 17 H 0.051 0.949 18 C -0.031 4.031 19 N -0.931 5.931 20 Si 1.119 2.881 21 H -0.280 1.280 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.103 4.103 25 C -0.067 4.067 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.109 0.891 32 H 0.405 0.595 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.006 0.994 36 H 0.000 1.000 37 H 0.257 0.743 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 18.872 -6.446 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.066 3.934 4 C -0.218 4.218 5 C -0.083 4.083 6 C -0.130 4.130 7 C -0.070 4.070 8 C -0.182 4.182 9 C -0.085 4.085 10 H 0.154 0.846 11 C 0.301 3.699 12 O -0.461 6.461 13 N -0.370 5.370 14 C 0.023 3.977 15 C -0.030 4.030 16 C -0.662 4.662 17 H 0.069 0.931 18 C -0.230 4.230 19 N -0.568 5.568 20 Si 0.939 3.061 21 H -0.205 1.205 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.141 4.141 25 C -0.103 4.103 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.127 0.873 32 H 0.241 0.759 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.731 17.461 -5.438 22.869 hybrid contribution -0.737 0.775 -0.669 1.261 sum -14.468 18.236 -6.107 24.066 Atomic orbital electron populations 1.23358 0.76141 1.05441 1.02593 1.86083 1.23844 1.27212 1.88770 1.18980 0.91853 0.85311 0.97281 1.21467 1.01267 0.91321 1.07723 1.20765 0.92781 0.98137 0.96630 1.20825 0.94175 0.95593 1.02441 1.19994 0.94251 0.93129 0.99651 1.19961 0.92546 0.97609 1.08095 1.21050 0.91044 0.96538 0.99899 0.84565 1.21134 0.79614 0.82515 0.86651 1.90636 1.48684 1.74367 1.32410 1.46308 1.55040 1.07234 1.28377 1.21069 0.95088 0.90065 0.91446 1.19287 0.95833 0.91380 0.96462 1.22295 1.37557 0.95129 1.11241 0.93108 1.27422 0.96968 0.98326 1.00253 1.70923 1.33604 1.39259 1.12975 0.82916 0.75660 0.74220 0.73277 1.20520 1.19339 1.19593 1.22305 0.98990 0.90430 1.02343 1.21039 0.90976 0.94512 1.03800 0.90818 0.87046 0.91505 0.82440 0.82279 0.87257 0.75852 0.93966 0.93137 0.97622 0.98149 0.93355 0.91471 0.87847 0.88838 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -9.40 10.50 -92.34 -0.97 -10.37 16 3 C 0.11 2.97 6.68 22.48 0.15 3.12 16 4 C -0.20 -3.91 9.04 22.34 0.20 -3.71 16 5 C -0.07 -1.15 10.03 22.29 0.22 -0.93 16 6 C -0.13 -2.70 6.14 -19.57 -0.12 -2.82 16 7 C -0.07 -1.83 5.59 -19.60 -0.11 -1.94 16 8 C -0.16 -4.86 9.46 22.40 0.21 -4.65 16 9 C -0.06 -1.65 3.26 -11.61 -0.04 -1.69 16 10 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 11 C 0.51 18.35 7.09 87.66 0.62 18.97 16 12 O -0.58 -24.88 15.49 -3.04 -0.05 -24.93 16 13 N -0.72 -27.24 5.01 -463.05 -2.32 -29.56 16 14 C 0.15 6.79 5.61 86.38 0.48 7.28 16 15 C 0.01 0.41 4.40 29.85 0.13 0.54 16 16 C -0.62 -36.51 9.11 25.60 0.23 -36.28 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 19 N -0.93 -57.69 13.65 21.45 0.29 -57.40 16 20 Si 1.12 50.86 29.90 68.60 2.05 52.92 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 C -0.10 -2.15 6.35 31.51 0.20 -1.95 16 25 C -0.07 -1.02 6.77 30.53 0.21 -0.82 16 26 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 0.88 7.67 -2.38 -0.02 0.87 16 29 H 0.16 2.08 6.31 -2.91 -0.02 2.06 16 30 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.11 3.60 6.11 -2.91 -0.02 3.58 16 32 H 0.41 13.84 6.74 -92.72 -0.63 13.22 16 33 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.01 0.30 8.01 -2.39 -0.02 0.28 16 36 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 37 H 0.26 16.01 7.22 -92.70 -0.67 15.34 16 38 H 0.07 1.77 7.02 -2.38 -0.02 1.75 16 39 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.94 338.21 3.50 -72.45 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.52 Total: 21.72 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.97 Total: -24.82 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.03 Total: -86.96 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.02 Total: -35.30 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.92 kcal Total: -75.94 3.50 -72.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278143114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.300 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds