Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99939 * 2 1 4 4 C 1.53002 * 109.46942 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.38280 * 119.97205 * 270.02299 * 5 4 3 7 7 C 1.38250 * 120.10833 * 180.02562 * 6 5 4 8 8 C 1.38159 * 120.05742 * 359.68104 * 7 6 5 9 9 C 1.38710 * 119.94311 * 0.57011 * 8 7 6 10 10 O 1.35900 * 120.05544 * 179.72143 * 9 8 7 11 11 C 1.42898 * 117.00172 * 359.72769 * 10 9 8 12 12 C 1.52997 * 109.47319 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.47017 * 55.00070 * 12 11 10 14 14 C 1.47205 * 109.47256 * 295.00406 * 12 11 10 15 15 N 9.07538 * 105.14214 * 34.08587 * 2 1 3 16 16 C 1.52994 * 109.47404 * 174.99993 * 12 11 10 17 17 C 1.50701 * 109.47248 * 184.99754 * 16 12 11 18 18 H 1.07997 * 120.00120 * 0.02562 * 17 16 12 19 19 C 1.37881 * 119.99825 * 179.97438 * 17 16 12 20 20 N 1.31509 * 120.00260 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47203 * 90.00043 * 21 19 17 23 23 H 1.48495 * 109.47415 * 210.00145 * 21 19 17 24 24 H 1.48498 * 109.47390 * 330.00270 * 21 19 17 25 25 C 1.38129 * 119.97079 * 89.99908 * 5 4 3 26 26 H 1.08998 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46708 * 299.99305 * 1 2 3 28 28 H 1.08994 * 109.47151 * 59.99741 * 1 2 3 29 29 H 1.08992 * 109.46853 * 60.00972 * 3 2 1 30 30 H 1.08995 * 109.46950 * 299.99955 * 3 2 1 31 31 H 1.09005 * 109.47190 * 60.00012 * 4 3 2 32 32 H 1.09002 * 109.47355 * 300.00329 * 4 3 2 33 33 H 1.08000 * 119.95034 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.97154 * 179.97438 * 7 6 5 35 35 H 1.08006 * 120.03137 * 180.29323 * 8 7 6 36 36 H 1.09002 * 109.47259 * 300.00149 * 11 10 9 37 37 H 1.09001 * 109.47074 * 60.00171 * 11 10 9 38 38 H 1.09001 * 109.47698 * 305.00111 * 16 12 11 39 39 H 1.09009 * 109.47010 * 65.00116 * 16 12 11 40 40 H 0.97000 * 120.00592 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.02418 * 0.02613 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4286 3.1934 -1.1976 7 6 4.9914 4.4561 -1.2003 8 6 5.2693 5.0924 -0.0059 9 6 4.9941 4.4584 1.1968 10 8 5.2718 5.0799 2.3730 11 6 5.8524 6.3834 2.2968 12 6 6.0912 6.9188 3.7100 13 1 6.6955 6.2060 4.2712 14 6 4.7984 7.1072 4.3883 15 7 3.7996 7.2553 4.9096 16 6 6.8255 8.2586 3.6305 17 6 7.1693 8.7264 5.0212 18 1 6.8922 8.1276 5.8762 19 6 7.8386 9.9182 5.2019 20 7 8.1765 10.6471 4.1607 21 14 8.2655 10.4976 6.9257 22 1 9.6024 9.9754 7.3066 23 1 8.2863 11.9821 6.9580 24 1 7.2471 9.9960 7.8829 25 6 4.4296 3.1909 1.1969 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8568 0.6439 -0.8909 32 1 3.8575 0.6435 0.8891 33 1 4.2073 2.6998 -2.1324 34 1 5.2097 4.9475 -2.1370 35 1 5.7047 6.0808 -0.0085 36 1 6.8015 6.3279 1.7636 37 1 5.1755 7.0521 1.7649 38 1 7.7408 8.1376 3.0512 39 1 6.1845 8.9961 3.1472 40 1 8.6471 11.4857 4.2878 41 1 4.2106 2.6968 2.1319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278173569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -53.867004 kcal Electronic energy + Delta-G solvation = -21362.644127 eV Core-core repulsion = 18014.463796 eV Total energy + Delta-G solvation = -3348.180331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22967 -38.49656 -37.69226 -36.19564 -33.88061 -33.35216 -32.08469 -30.25421 -29.01085 -27.24756 -26.56021 -24.32728 -23.31365 -22.60682 -21.83892 -20.79731 -17.82924 -17.23126 -16.68961 -16.61025 -16.42433 -15.97578 -15.69513 -15.34628 -15.11039 -14.62481 -14.30506 -13.84670 -13.37904 -13.26918 -13.10915 -12.97095 -12.57042 -12.40400 -12.13651 -11.95351 -11.76312 -11.53735 -11.45809 -11.42384 -11.18966 -11.02979 -10.75544 -10.68522 -10.64054 -10.32787 -9.98392 -9.75424 -9.36732 -8.93146 -8.53311 -8.18896 -6.17672 -4.21455 1.19436 1.40370 3.18469 3.25540 3.32549 3.37293 3.40626 3.58067 3.62431 3.75584 4.35384 4.64421 4.65353 4.71900 4.80841 4.84644 5.01311 5.05331 5.10906 5.17473 5.20433 5.20943 5.26779 5.33436 5.36650 5.41049 5.45738 5.66467 5.69117 5.76410 5.96370 6.14670 6.27828 6.30305 6.38480 6.48194 6.72291 6.81516 7.27749 7.37133 7.47825 7.77166 8.11713 8.36854 8.82506 9.44620 10.93216 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.002610 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.140424 B =10725.486960 C =11394.577713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.065 3.935 4 C -0.076 4.076 5 C -0.050 4.050 6 C -0.159 4.159 7 C -0.077 4.077 8 C -0.210 4.210 9 C 0.142 3.858 10 O -0.314 6.314 11 C 0.065 3.935 12 C 0.012 3.988 13 H 0.114 0.886 14 C 0.244 3.756 15 N -0.468 5.468 16 C 0.034 3.966 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.151 4.151 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 -17.446 -13.347 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.011 4.011 4 C -0.114 4.114 5 C -0.050 4.050 6 C -0.178 4.178 7 C -0.095 4.095 8 C -0.229 4.229 9 C 0.096 3.904 10 O -0.228 6.228 11 C -0.010 4.010 12 C -0.010 4.010 13 H 0.131 0.869 14 C -0.073 4.073 15 N -0.144 5.144 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.170 4.170 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.220 -17.273 -12.396 23.174 hybrid contribution 0.558 0.915 0.576 1.217 sum -8.662 -16.358 -11.820 21.962 Atomic orbital electron populations 1.22740 0.80881 1.02724 1.00132 1.87843 1.19834 1.28184 1.95495 1.22530 0.93329 0.84458 1.00790 1.20439 0.92996 0.93585 1.04344 1.19382 0.97897 0.95165 0.92543 1.20892 1.03512 0.96058 0.97301 1.20924 0.96605 0.94514 0.97490 1.21395 1.07280 1.01992 0.92187 1.19017 0.94150 0.92154 0.85077 1.86125 1.76881 1.31990 1.27787 1.23085 0.98565 0.81005 0.98388 1.19304 0.87473 1.03057 0.91142 0.86856 1.28931 0.93949 0.91463 0.93005 1.81023 1.12984 1.10583 1.09819 1.19177 0.95277 0.87012 0.98961 1.21075 1.37661 1.06010 0.91902 0.92275 1.24950 0.95438 0.96406 0.97131 1.69925 1.39644 1.13856 1.29456 0.86541 0.78922 0.77924 0.84425 1.20365 1.21093 1.19805 1.20315 1.04317 0.93799 0.98522 0.89609 0.93945 0.94066 0.92870 0.93028 0.89949 0.89914 0.86126 0.85756 0.84937 0.89852 0.91395 0.93939 0.95262 0.92655 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.90 10.70 -35.23 -0.38 -4.28 16 3 C 0.07 0.59 5.92 37.16 0.22 0.81 16 4 C -0.08 -0.68 5.71 -27.88 -0.16 -0.84 16 5 C -0.05 -0.52 5.13 -104.65 -0.54 -1.06 16 6 C -0.16 -1.58 9.70 -39.56 -0.38 -1.96 16 7 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 8 C -0.21 -2.54 9.04 -39.44 -0.36 -2.89 16 9 C 0.14 1.95 6.69 -39.22 -0.26 1.68 16 10 O -0.31 -4.83 9.87 -19.43 -0.19 -5.02 16 11 C 0.07 0.97 4.09 37.16 0.15 1.13 16 12 C 0.01 0.22 2.45 -93.41 -0.23 -0.01 16 13 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 14 C 0.24 5.07 13.71 -20.75 -0.28 4.79 16 15 N -0.47 -10.56 18.54 42.17 0.78 -9.78 16 16 C 0.03 0.76 4.42 -27.89 -0.12 0.63 16 17 C -0.53 -13.74 8.60 -34.44 -0.30 -14.04 16 18 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.15 -1.87 9.64 -39.43 -0.38 -2.25 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.13 1.47 6.30 -52.48 -0.33 1.14 16 36 H 0.08 1.07 7.67 -51.93 -0.40 0.68 16 37 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -30.52 357.88 -6.85 -37.37 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.15 Total: -3.20 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.02 Total: -12.27 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 1.52 Total: -33.93 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.57 Total: -9.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.52 -6.85 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278173569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.500 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds