Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99939 * 2 1 4 4 C 1.53002 * 109.46942 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.38280 * 119.97205 * 270.02299 * 5 4 3 7 7 C 1.38250 * 120.10833 * 180.02562 * 6 5 4 8 8 C 1.38159 * 120.05742 * 359.68104 * 7 6 5 9 9 C 1.38710 * 119.94311 * 0.57011 * 8 7 6 10 10 O 1.35900 * 120.05544 * 179.72143 * 9 8 7 11 11 C 1.42898 * 117.00172 * 359.72769 * 10 9 8 12 12 C 1.52997 * 109.47319 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.47017 * 55.00070 * 12 11 10 14 14 C 1.47205 * 109.47256 * 295.00406 * 12 11 10 15 15 N 9.07538 * 105.14214 * 34.08587 * 2 1 3 16 16 C 1.52994 * 109.47404 * 174.99993 * 12 11 10 17 17 C 1.50701 * 109.47248 * 184.99754 * 16 12 11 18 18 H 1.07997 * 120.00120 * 0.02562 * 17 16 12 19 19 C 1.37881 * 119.99825 * 179.97438 * 17 16 12 20 20 N 1.31509 * 120.00260 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47203 * 90.00043 * 21 19 17 23 23 H 1.48495 * 109.47415 * 210.00145 * 21 19 17 24 24 H 1.48498 * 109.47390 * 330.00270 * 21 19 17 25 25 C 1.38129 * 119.97079 * 89.99908 * 5 4 3 26 26 H 1.08998 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46708 * 299.99305 * 1 2 3 28 28 H 1.08994 * 109.47151 * 59.99741 * 1 2 3 29 29 H 1.08992 * 109.46853 * 60.00972 * 3 2 1 30 30 H 1.08995 * 109.46950 * 299.99955 * 3 2 1 31 31 H 1.09005 * 109.47190 * 60.00012 * 4 3 2 32 32 H 1.09002 * 109.47355 * 300.00329 * 4 3 2 33 33 H 1.08000 * 119.95034 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.97154 * 179.97438 * 7 6 5 35 35 H 1.08006 * 120.03137 * 180.29323 * 8 7 6 36 36 H 1.09002 * 109.47259 * 300.00149 * 11 10 9 37 37 H 1.09001 * 109.47074 * 60.00171 * 11 10 9 38 38 H 1.09001 * 109.47698 * 305.00111 * 16 12 11 39 39 H 1.09009 * 109.47010 * 65.00116 * 16 12 11 40 40 H 0.97000 * 120.00592 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.02418 * 0.02613 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.4286 3.1934 -1.1976 7 6 4.9914 4.4561 -1.2003 8 6 5.2693 5.0924 -0.0059 9 6 4.9941 4.4584 1.1968 10 8 5.2718 5.0799 2.3730 11 6 5.8524 6.3834 2.2968 12 6 6.0912 6.9188 3.7100 13 1 6.6955 6.2060 4.2712 14 6 4.7984 7.1072 4.3883 15 7 3.7996 7.2553 4.9096 16 6 6.8255 8.2586 3.6305 17 6 7.1693 8.7264 5.0212 18 1 6.8922 8.1276 5.8762 19 6 7.8386 9.9182 5.2019 20 7 8.1765 10.6471 4.1607 21 14 8.2655 10.4976 6.9257 22 1 9.6024 9.9754 7.3066 23 1 8.2863 11.9821 6.9580 24 1 7.2471 9.9960 7.8829 25 6 4.4296 3.1909 1.1969 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8568 0.6439 -0.8909 32 1 3.8575 0.6435 0.8891 33 1 4.2073 2.6998 -2.1324 34 1 5.2097 4.9475 -2.1370 35 1 5.7047 6.0808 -0.0085 36 1 6.8015 6.3279 1.7636 37 1 5.1755 7.0521 1.7649 38 1 7.7408 8.1376 3.0512 39 1 6.1845 8.9961 3.1472 40 1 8.6471 11.4857 4.2878 41 1 4.2106 2.6968 2.1319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278173569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -70.144963 kcal Electronic energy + Delta-G solvation = -21363.349992 eV Core-core repulsion = 18014.463796 eV Total energy + Delta-G solvation = -3348.886196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19848 -39.38724 -38.60512 -37.69779 -35.67083 -34.19289 -33.79975 -31.25002 -29.78514 -28.87038 -27.20315 -25.68343 -24.30606 -23.69701 -23.30282 -21.70363 -18.84959 -18.75020 -18.37692 -17.32153 -17.24901 -17.00840 -16.64708 -16.54625 -16.24233 -15.97579 -15.27180 -15.00289 -14.86482 -14.35506 -14.21178 -14.03133 -13.92407 -13.69996 -13.59414 -13.21620 -13.04288 -12.73384 -12.57382 -12.54837 -12.41678 -12.28534 -12.16414 -12.06841 -11.74424 -11.67824 -11.55482 -11.26949 -10.64535 -10.56873 -9.77870 -9.11977 -8.22323 -6.30340 0.34478 0.52515 1.40178 1.42340 1.51152 1.82904 1.92863 2.19972 2.42421 2.67608 2.97043 3.09160 3.15844 3.82730 3.92627 4.01432 4.05899 4.15137 4.21725 4.28218 4.40174 4.44345 4.49125 4.50132 4.52730 4.55204 4.62961 4.70866 4.75777 4.84622 4.95720 5.02494 5.16789 5.40212 5.41270 5.53770 5.54186 5.65959 5.74737 5.87435 6.14132 6.18486 6.47177 6.69009 6.82866 7.38281 8.88553 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.002610 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.140424 B =10725.486960 C =11394.577713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.067 3.933 4 C -0.072 4.072 5 C -0.048 4.048 6 C -0.155 4.155 7 C -0.078 4.078 8 C -0.219 4.219 9 C 0.115 3.885 10 O -0.332 6.332 11 C 0.075 3.925 12 C 0.021 3.979 13 H 0.128 0.872 14 C 0.253 3.747 15 N -0.503 5.503 16 C 0.041 3.959 17 C -0.541 4.541 18 H 0.054 0.946 19 C 0.014 3.986 20 N -0.920 5.920 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.277 1.277 25 C -0.166 4.166 26 H 0.099 0.901 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -18.535 -14.679 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.010 4.010 4 C -0.109 4.109 5 C -0.048 4.048 6 C -0.173 4.173 7 C -0.096 4.096 8 C -0.238 4.238 9 C 0.070 3.930 10 O -0.246 6.246 11 C -0.001 4.001 12 C -0.001 4.001 13 H 0.146 0.854 14 C -0.063 4.063 15 N -0.180 5.180 16 C 0.003 3.997 17 C -0.579 4.579 18 H 0.073 0.927 19 C -0.186 4.186 20 N -0.560 5.560 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.203 1.203 25 C -0.185 4.185 26 H 0.118 0.882 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.138 -18.379 -13.731 24.694 hybrid contribution 0.475 1.176 0.923 1.568 sum -8.664 -17.203 -12.807 23.131 Atomic orbital electron populations 1.22925 0.79561 1.03905 1.00718 1.87808 1.21381 1.28548 1.95606 1.22510 0.93331 0.84332 1.00811 1.20421 0.92916 0.92728 1.04878 1.19560 0.97395 0.95681 0.92201 1.21257 1.02100 0.95853 0.98053 1.21276 0.95721 0.94673 0.97898 1.21578 1.07498 1.02427 0.92295 1.19252 0.95922 0.92855 0.85017 1.86052 1.77563 1.31876 1.29156 1.22899 0.99946 0.81297 0.95935 1.19224 0.85948 1.01492 0.93392 0.85394 1.29463 0.94161 0.90481 0.92213 1.81014 1.14232 1.11607 1.11132 1.18977 0.95344 0.88477 0.96942 1.21479 1.37007 1.05976 0.93482 0.92746 1.25677 0.95746 0.96844 1.00305 1.70008 1.40629 1.14299 1.31043 0.85676 0.78918 0.77404 0.80468 1.19135 1.20938 1.20250 1.20463 1.04914 0.93783 0.99311 0.88234 0.93813 0.93023 0.93716 0.92144 0.88592 0.90227 0.83437 0.83126 0.84319 0.87557 0.91105 0.93623 0.97238 0.92573 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.65 10.70 -148.98 -1.59 -9.24 16 3 C 0.07 1.12 5.92 71.98 0.43 1.54 16 4 C -0.07 -1.17 5.71 29.85 0.17 -1.00 16 5 C -0.05 -0.94 5.13 -19.88 -0.10 -1.04 16 6 C -0.15 -2.63 9.70 22.28 0.22 -2.41 16 7 C -0.08 -1.41 10.04 22.25 0.22 -1.18 16 8 C -0.22 -4.97 9.04 22.36 0.20 -4.76 16 9 C 0.11 3.06 6.69 22.50 0.15 3.22 16 10 O -0.33 -10.07 9.87 -92.43 -0.91 -10.99 16 11 C 0.07 2.16 4.09 71.98 0.29 2.46 16 12 C 0.02 0.75 2.45 -12.60 -0.03 0.72 16 13 H 0.13 4.24 8.14 -2.38 -0.02 4.22 16 14 C 0.25 10.55 13.71 89.44 1.23 11.78 16 15 N -0.50 -22.88 18.54 20.01 0.37 -22.51 16 16 C 0.04 1.82 4.42 29.85 0.13 1.95 16 17 C -0.54 -28.11 8.60 25.60 0.22 -27.89 16 18 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 19 C 0.01 0.74 5.46 84.66 0.46 1.20 16 20 N -0.92 -51.50 13.29 21.45 0.28 -51.22 16 21 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 C -0.17 -4.03 9.64 22.37 0.22 -3.82 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.30 8.09 -2.38 -0.02 1.28 16 32 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.14 2.86 6.30 -2.91 -0.02 2.84 16 36 H 0.11 2.57 7.67 -2.39 -0.02 2.55 16 37 H 0.07 1.99 7.65 -2.39 -0.02 1.97 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -64.69 357.88 6.24 -58.45 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.01 Total: 8.30 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.06 Total: -17.67 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: 0.66 Total: -73.73 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -2.51 Total: -20.23 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.69 6.24 -58.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278173569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.696 kcal (2) G-P(sol) polarization free energy of solvation -64.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds