Wall clock time and date at job start Tue Mar 31 2020 07:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00512 * 2 1 4 4 C 1.53003 * 109.47040 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46852 * 179.97438 * 4 3 2 6 6 C 1.38286 * 119.97369 * 270.02148 * 5 4 3 7 7 C 1.38245 * 120.11197 * 180.02562 * 6 5 4 8 8 C 1.38164 * 120.05145 * 359.67462 * 7 6 5 9 9 C 1.38710 * 119.94963 * 0.58232 * 8 7 6 10 10 O 1.35902 * 120.06026 * 179.71804 * 9 8 7 11 11 C 1.42903 * 116.99587 * 359.72489 * 10 9 8 12 12 C 1.52996 * 109.46740 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00037 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99804 * 12 11 10 15 15 N 9.75809 * 131.31474 * 42.05203 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99760 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.38124 * 119.97121 * 90.00395 * 5 4 3 26 26 H 1.09000 * 109.47032 * 300.00538 * 1 2 3 27 27 H 1.09001 * 109.46986 * 59.99401 * 1 2 3 28 28 H 1.08993 * 109.47649 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47007 * 60.00290 * 3 2 1 30 30 H 1.08993 * 109.46728 * 299.99704 * 3 2 1 31 31 H 1.09004 * 109.46683 * 60.00114 * 4 3 2 32 32 H 1.08999 * 109.46855 * 300.00111 * 4 3 2 33 33 H 1.08000 * 119.94551 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.97006 * 179.97438 * 7 6 5 35 35 H 1.08009 * 120.02587 * 180.29688 * 8 7 6 36 36 H 1.08997 * 109.47067 * 59.99825 * 11 10 9 37 37 H 1.08996 * 109.47310 * 299.99894 * 11 10 9 38 38 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 39 39 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 40 40 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 41 41 H 1.08008 * 120.02536 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 0.0006 5 6 4.1486 2.5611 0.0000 6 6 4.4297 3.1917 -1.1982 7 6 4.9925 4.4544 -1.2021 8 6 5.2694 5.0922 -0.0082 9 6 4.9934 4.4597 1.1951 10 8 5.2701 5.0827 2.3708 11 6 5.8506 6.3862 2.2933 12 6 6.0883 6.9233 3.7060 13 1 5.1542 6.8962 4.2670 14 6 7.0931 6.0892 4.3855 15 7 7.8712 5.4422 4.9092 16 6 6.5930 8.3654 3.6251 17 6 6.7101 8.9353 5.0152 18 1 6.4510 8.3295 5.8709 19 6 7.1541 10.2283 5.1951 20 7 7.2615 10.7239 6.4085 21 14 7.6029 11.2760 3.7151 22 1 6.4026 12.0167 3.2507 23 1 8.6641 12.2424 4.0964 24 1 8.0990 10.4019 2.6219 25 6 4.4289 3.1922 1.1963 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6888 1.8463 0.8900 30 1 1.6888 1.8462 -0.8900 31 1 3.8575 0.6433 -0.8892 32 1 3.8567 0.6436 0.8909 33 1 4.2091 2.6969 -2.1325 34 1 5.2115 4.9445 -2.1392 35 1 5.7047 6.0806 -0.0117 36 1 5.1742 7.0540 1.7600 37 1 6.8001 6.3300 1.7610 38 1 5.8907 8.9641 3.0449 39 1 7.5700 8.3819 3.1422 40 1 7.5735 11.6335 6.5350 41 1 4.2093 2.6992 2.1318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278173572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:56 Heat of formation + Delta-G solvation = -49.331056 kcal Electronic energy + Delta-G solvation = -21401.001105 eV Core-core repulsion = 18053.017468 eV Total energy + Delta-G solvation = -3347.983637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.30133 -38.54828 -37.75003 -36.23670 -33.90069 -33.39566 -32.15718 -30.38088 -29.06762 -27.72503 -26.60775 -24.40094 -23.31670 -22.65537 -21.58283 -20.83671 -17.88694 -17.30059 -17.05414 -16.64391 -16.48009 -16.12748 -15.78806 -15.42372 -15.14606 -14.52549 -14.25592 -13.85850 -13.49136 -13.38437 -13.23917 -12.94618 -12.79650 -12.46852 -12.26627 -12.10935 -11.79899 -11.68146 -11.53788 -11.45818 -11.35972 -11.15129 -10.81776 -10.72897 -10.50801 -10.17871 -10.01077 -9.90820 -9.43785 -8.98833 -8.69281 -8.25585 -6.17788 -4.19793 1.13575 1.34358 3.11046 3.20131 3.28589 3.29774 3.36024 3.51621 3.56390 3.70450 4.31052 4.53528 4.60987 4.66407 4.75320 4.81344 4.96802 5.00484 5.07705 5.09798 5.14868 5.16034 5.19600 5.28376 5.29744 5.32163 5.39683 5.56516 5.62000 5.70874 5.90122 5.99371 6.11060 6.21686 6.31056 6.42873 6.65427 6.76203 6.79072 6.96913 7.38500 7.53664 8.29717 8.35252 8.85155 9.40638 10.95049 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002705 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.619769 B =10347.242403 C =10690.631809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.066 3.934 4 C -0.077 4.077 5 C -0.049 4.049 6 C -0.159 4.159 7 C -0.077 4.077 8 C -0.211 4.211 9 C 0.141 3.859 10 O -0.312 6.312 11 C 0.063 3.937 12 C 0.023 3.977 13 H 0.119 0.881 14 C 0.240 3.760 15 N -0.459 5.459 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.150 4.150 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -15.210 -18.586 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.115 4.115 5 C -0.049 4.049 6 C -0.177 4.177 7 C -0.095 4.095 8 C -0.229 4.229 9 C 0.095 3.905 10 O -0.225 6.225 11 C -0.013 4.013 12 C 0.001 3.999 13 H 0.137 0.863 14 C -0.078 4.078 15 N -0.135 5.135 16 C -0.041 4.041 17 C -0.569 4.569 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.593 -16.246 -17.468 26.101 hybrid contribution -0.126 1.478 -0.933 1.752 sum -10.719 -14.768 -18.401 25.915 Atomic orbital electron populations 1.22740 0.80852 1.02749 1.00126 1.87847 1.19854 1.28168 1.95491 1.22521 0.93249 0.84488 1.00784 1.20448 0.93072 0.93545 1.04394 1.19393 0.97814 0.95154 0.92518 1.20901 1.03424 0.96036 0.97333 1.20915 0.96633 0.94544 0.97457 1.21369 1.07389 1.01981 0.92208 1.19013 0.94219 0.92217 0.85007 1.86133 1.76739 1.31870 1.27802 1.23087 0.98342 0.81596 0.98257 1.19007 0.95376 0.94197 0.91302 0.86322 1.28902 0.93660 0.92048 0.93157 1.81178 1.10961 1.12010 1.09371 1.19633 0.97078 0.87546 0.99808 1.20950 1.46031 0.98866 0.91013 0.90570 1.24981 0.94587 0.97697 0.95759 1.69895 1.46170 1.16130 1.20902 0.86823 0.78761 0.80612 0.83402 1.19912 1.21174 1.18862 1.20328 1.04219 0.93682 0.98593 0.93924 0.94062 0.89610 0.92826 0.93022 0.89955 0.89881 0.86088 0.85775 0.85061 0.89904 0.91336 0.94461 0.95355 0.92416 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.73 10.70 -35.23 -0.38 -4.11 16 3 C 0.07 0.56 5.92 37.16 0.22 0.78 16 4 C -0.08 -0.66 5.71 -27.88 -0.16 -0.82 16 5 C -0.05 -0.49 5.13 -104.65 -0.54 -1.03 16 6 C -0.16 -1.49 9.70 -39.56 -0.38 -1.88 16 7 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 8 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 9 C 0.14 1.85 6.69 -39.22 -0.26 1.58 16 10 O -0.31 -4.58 9.87 -19.43 -0.19 -4.78 16 11 C 0.06 0.87 4.09 37.16 0.15 1.03 16 12 C 0.02 0.40 2.45 -93.41 -0.23 0.17 16 13 H 0.12 1.97 8.14 -51.93 -0.42 1.54 16 14 C 0.24 4.93 13.72 -20.64 -0.28 4.65 16 15 N -0.46 -10.38 18.56 42.29 0.78 -9.60 16 16 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 17 C -0.53 -13.95 9.15 -34.44 -0.32 -14.26 16 18 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 20 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 21 Si 0.88 20.02 27.47 -169.99 -4.67 15.35 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 25 C -0.15 -1.78 9.64 -39.43 -0.38 -2.16 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.33 6.30 -52.48 -0.33 0.99 16 36 H 0.08 0.94 7.65 -51.93 -0.40 0.55 16 37 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 38 H 0.04 0.69 7.58 -51.93 -0.39 0.30 16 39 H 0.03 0.59 7.19 -51.93 -0.37 0.21 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.84 354.30 -6.47 -38.31 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.12 Total: -2.02 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.01 Total: -12.77 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 1.56 Total: -35.32 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.57 Total: -8.89 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.84 -6.47 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278173572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.023 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds