Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00512 * 2 1 4 4 C 1.53003 * 109.47040 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46852 * 179.97438 * 4 3 2 6 6 C 1.38286 * 119.97369 * 270.02148 * 5 4 3 7 7 C 1.38245 * 120.11197 * 180.02562 * 6 5 4 8 8 C 1.38164 * 120.05145 * 359.67462 * 7 6 5 9 9 C 1.38710 * 119.94963 * 0.58232 * 8 7 6 10 10 O 1.35902 * 120.06026 * 179.71804 * 9 8 7 11 11 C 1.42903 * 116.99587 * 359.72489 * 10 9 8 12 12 C 1.52996 * 109.46740 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00037 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99804 * 12 11 10 15 15 N 9.75809 * 131.31474 * 42.05203 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99760 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.38124 * 119.97121 * 90.00395 * 5 4 3 26 26 H 1.09000 * 109.47032 * 300.00538 * 1 2 3 27 27 H 1.09001 * 109.46986 * 59.99401 * 1 2 3 28 28 H 1.08993 * 109.47649 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47007 * 60.00290 * 3 2 1 30 30 H 1.08993 * 109.46728 * 299.99704 * 3 2 1 31 31 H 1.09004 * 109.46683 * 60.00114 * 4 3 2 32 32 H 1.08999 * 109.46855 * 300.00111 * 4 3 2 33 33 H 1.08000 * 119.94551 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.97006 * 179.97438 * 7 6 5 35 35 H 1.08009 * 120.02587 * 180.29688 * 8 7 6 36 36 H 1.08997 * 109.47067 * 59.99825 * 11 10 9 37 37 H 1.08996 * 109.47310 * 299.99894 * 11 10 9 38 38 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 39 39 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 40 40 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 41 41 H 1.08008 * 120.02536 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 0.0006 5 6 4.1486 2.5611 0.0000 6 6 4.4297 3.1917 -1.1982 7 6 4.9925 4.4544 -1.2021 8 6 5.2694 5.0922 -0.0082 9 6 4.9934 4.4597 1.1951 10 8 5.2701 5.0827 2.3708 11 6 5.8506 6.3862 2.2933 12 6 6.0883 6.9233 3.7060 13 1 5.1542 6.8962 4.2670 14 6 7.0931 6.0892 4.3855 15 7 7.8712 5.4422 4.9092 16 6 6.5930 8.3654 3.6251 17 6 6.7101 8.9353 5.0152 18 1 6.4510 8.3295 5.8709 19 6 7.1541 10.2283 5.1951 20 7 7.2615 10.7239 6.4085 21 14 7.6029 11.2760 3.7151 22 1 6.4026 12.0167 3.2507 23 1 8.6641 12.2424 4.0964 24 1 8.0990 10.4019 2.6219 25 6 4.4289 3.1922 1.1963 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6888 1.8463 0.8900 30 1 1.6888 1.8462 -0.8900 31 1 3.8575 0.6433 -0.8892 32 1 3.8567 0.6436 0.8909 33 1 4.2091 2.6969 -2.1325 34 1 5.2115 4.9445 -2.1392 35 1 5.7047 6.0806 -0.0117 36 1 5.1742 7.0540 1.7600 37 1 6.8001 6.3300 1.7610 38 1 5.8907 8.9641 3.0449 39 1 7.5700 8.3819 3.1422 40 1 7.5735 11.6335 6.5350 41 1 4.2093 2.6992 2.1318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278173572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = -68.287600 kcal Electronic energy + Delta-G solvation = -21401.823123 eV Core-core repulsion = 18053.017468 eV Total energy + Delta-G solvation = -3348.805655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19432 -39.38588 -38.59871 -37.68332 -35.62926 -34.20009 -33.90770 -31.32702 -29.79101 -29.26654 -27.19373 -25.61590 -24.20198 -23.57785 -23.17519 -21.68998 -19.00401 -18.79840 -18.61376 -17.31185 -17.25966 -17.03308 -16.63578 -16.33438 -16.22325 -15.92640 -15.21557 -15.13785 -14.98247 -14.46360 -14.21972 -14.05489 -13.95771 -13.72484 -13.69347 -13.23004 -13.09176 -12.78156 -12.53740 -12.47842 -12.21776 -12.19300 -12.12183 -11.82952 -11.78743 -11.70321 -11.62481 -11.34116 -10.73888 -10.62574 -9.76879 -9.10976 -8.25483 -6.32538 0.35556 0.53370 1.43747 1.47002 1.56773 1.80855 1.90352 2.21440 2.41008 2.68849 2.98163 3.05255 3.13962 3.80504 3.93418 4.01837 4.04586 4.15686 4.22478 4.29316 4.38289 4.43765 4.47283 4.50972 4.53322 4.56512 4.62474 4.66954 4.71092 4.86475 4.96291 5.02217 5.14751 5.17266 5.36098 5.40988 5.54194 5.59719 5.67094 5.88538 6.20798 6.22705 6.48842 6.68642 6.77194 7.31847 8.91386 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002705 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.619769 B =10347.242403 C =10690.631809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.068 3.932 4 C -0.074 4.074 5 C -0.049 4.049 6 C -0.156 4.156 7 C -0.077 4.077 8 C -0.217 4.217 9 C 0.116 3.884 10 O -0.334 6.334 11 C 0.071 3.929 12 C 0.026 3.974 13 H 0.124 0.876 14 C 0.249 3.751 15 N -0.505 5.505 16 C 0.001 3.999 17 C -0.535 4.535 18 H 0.028 0.972 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.950 3.050 22 H -0.255 1.255 23 H -0.297 1.297 24 H -0.232 1.232 25 C -0.168 4.168 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.722 -15.049 -22.806 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.008 4.008 4 C -0.111 4.111 5 C -0.049 4.049 6 C -0.174 4.174 7 C -0.095 4.095 8 C -0.235 4.235 9 C 0.070 3.930 10 O -0.249 6.249 11 C -0.005 4.005 12 C 0.005 3.995 13 H 0.142 0.858 14 C -0.067 4.067 15 N -0.182 5.182 16 C -0.038 4.038 17 C -0.573 4.573 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.594 5.594 21 Si 0.772 3.228 22 H -0.180 1.180 23 H -0.224 1.224 24 H -0.155 1.155 25 C -0.187 4.187 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.428 -16.120 -21.712 29.358 hybrid contribution 0.052 1.303 0.433 1.374 sum -11.376 -14.818 -21.279 28.316 Atomic orbital electron populations 1.22922 0.79487 1.03846 1.00829 1.87810 1.21462 1.28686 1.95625 1.22503 0.93013 0.84310 1.01019 1.20428 0.93279 0.92842 1.04587 1.19542 0.97484 0.95567 0.92282 1.21256 1.02204 0.96028 0.97907 1.21286 0.95607 0.94551 0.98055 1.21598 1.07299 1.02661 0.91978 1.19229 0.95843 0.92793 0.85086 1.86065 1.77365 1.32239 1.29218 1.22989 0.99877 0.82221 0.95382 1.19079 0.94295 0.92389 0.93766 0.85786 1.29684 0.93360 0.91458 0.92211 1.81166 1.12513 1.13602 1.10922 1.19568 0.98529 0.89275 0.96415 1.21326 1.44705 0.98460 0.92764 0.95353 1.26075 0.94693 0.99549 0.99150 1.70090 1.48513 1.16720 1.24059 0.85668 0.78753 0.78613 0.79717 1.17958 1.22350 1.15502 1.20458 1.05135 0.93926 0.99184 0.93637 0.92927 0.88427 0.93389 0.91949 0.88844 0.90615 0.83595 0.82973 0.83657 0.86571 0.90314 0.90902 0.94626 0.92581 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.39 10.70 -148.98 -1.59 -8.98 16 3 C 0.07 1.06 5.92 71.98 0.43 1.48 16 4 C -0.07 -1.18 5.71 29.85 0.17 -1.01 16 5 C -0.05 -0.90 5.13 -19.88 -0.10 -1.00 16 6 C -0.16 -2.43 9.70 22.28 0.22 -2.22 16 7 C -0.08 -1.22 10.04 22.25 0.22 -0.99 16 8 C -0.22 -4.26 9.04 22.37 0.20 -4.06 16 9 C 0.12 2.85 6.69 22.51 0.15 3.00 16 10 O -0.33 -9.44 9.87 -92.45 -0.91 -10.35 16 11 C 0.07 1.77 4.09 71.98 0.29 2.06 16 12 C 0.03 0.88 2.45 -12.60 -0.03 0.85 16 13 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 14 C 0.25 10.32 13.72 89.40 1.23 11.55 16 15 N -0.50 -23.38 18.56 20.05 0.37 -23.00 16 16 C 0.00 0.02 3.49 29.85 0.10 0.13 16 17 C -0.53 -28.34 9.15 25.60 0.23 -28.10 16 18 H 0.03 1.72 7.84 -2.91 -0.02 1.69 16 19 C 0.00 0.12 5.47 84.66 0.46 0.58 16 20 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 21 Si 0.95 40.03 27.47 68.60 1.88 41.91 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.30 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 25 C -0.17 -3.92 9.64 22.37 0.22 -3.70 16 26 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.27 8.08 -2.38 -0.02 1.25 16 32 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 36 H 0.12 2.13 7.65 -2.39 -0.02 2.12 16 37 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 38 H 0.07 2.37 7.58 -2.38 -0.02 2.36 16 39 H 0.04 1.35 7.19 -2.39 -0.02 1.33 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.12 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -72.09 354.30 6.05 -66.05 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.96 Total: 12.41 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 5.04 Total: -19.89 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: 0.67 Total: -81.14 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -2.51 Total: -19.34 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.88 Total: 41.91 kcal Total: -72.09 6.05 -66.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278173572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.240 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds