Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47005 * 2 1 4 4 C 1.36908 * 119.99872 * 236.66036 * 3 2 1 5 5 H 1.08000 * 120.00260 * 228.84515 * 4 3 2 6 6 C 1.39030 * 119.99845 * 48.84558 * 4 3 2 7 7 N 1.31383 * 119.99891 * 34.69443 * 6 4 3 8 8 Si 1.86798 * 119.99988 * 214.69104 * 6 4 3 9 9 H 1.48501 * 109.47237 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46964 * 119.99975 * 8 6 4 11 11 H 1.48495 * 109.47208 * 240.00287 * 8 6 4 12 12 C 1.34775 * 120.00242 * 56.65849 * 3 2 1 13 13 O 1.21628 * 119.99726 * 163.49305 * 12 3 2 14 14 C 1.47423 * 119.99849 * 343.77394 * 12 3 2 15 15 C 1.39586 * 120.05833 * 36.16817 * 14 12 3 16 16 C 1.37778 * 120.17837 * 179.87442 * 15 14 12 17 17 C 1.38649 * 119.97943 * 0.33446 * 16 15 14 18 18 C 1.37680 * 120.33579 * 359.73075 * 17 16 15 19 19 C 1.38854 * 120.87755 * 0.27876 * 18 17 16 20 20 O 1.35863 * 111.32608 * 179.30975 * 19 18 17 21 21 C 1.43769 * 109.28750 * 18.84236 * 20 19 18 22 22 C 1.51675 * 132.13175 * 180.53116 * 18 17 16 23 23 C 1.52991 * 110.94728 * 46.12750 * 22 18 17 24 24 C 1.53001 * 110.97955 * 282.43330 * 22 18 17 25 25 H 1.08997 * 109.47125 * 201.03108 * 1 2 3 26 26 H 1.09004 * 109.47377 * 321.03495 * 1 2 3 27 27 H 1.09004 * 109.47112 * 81.02879 * 1 2 3 28 28 H 1.08996 * 109.47312 * 240.00017 * 2 1 3 29 29 H 1.08993 * 109.47373 * 120.00014 * 2 1 3 30 30 H 0.97003 * 119.99616 * 180.02562 * 7 6 4 31 31 H 1.07997 * 119.91372 * 0.12305 * 15 14 12 32 32 H 1.08001 * 120.00741 * 180.08986 * 16 15 14 33 33 H 1.08011 * 119.83614 * 179.70340 * 17 16 15 34 34 H 1.08996 * 110.75950 * 90.67497 * 21 20 19 35 35 H 1.09000 * 110.75108 * 214.03641 * 21 20 19 36 36 H 1.09004 * 109.47402 * 173.94860 * 23 22 18 37 37 H 1.08995 * 109.47426 * 293.95635 * 23 22 18 38 38 H 1.09007 * 109.47184 * 53.95209 * 23 22 18 39 39 H 1.09004 * 109.47370 * 306.03675 * 24 22 18 40 40 H 1.08999 * 109.46640 * 66.03012 * 24 22 18 41 41 H 1.08992 * 109.47086 * 186.02777 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8608 1.8094 -0.9905 5 1 3.7661 2.3412 -0.7371 6 6 2.5511 1.5597 -2.3227 7 7 1.2984 1.5684 -2.7186 8 14 3.9160 1.2119 -3.5496 9 1 5.2285 1.2591 -2.8565 10 1 3.7177 -0.1353 -4.1420 11 1 3.8870 2.2350 -4.6256 12 6 1.6381 2.2305 0.9751 13 8 2.2555 3.2624 1.1576 14 6 0.4777 1.9056 1.8243 15 6 0.2319 0.5829 2.1962 16 6 -0.8504 0.2768 2.9920 17 6 -1.7026 1.2834 3.4196 18 6 -1.4705 2.5914 3.0578 19 6 -0.3875 2.9277 2.2566 20 8 -0.3524 4.2630 2.0082 21 6 -1.1566 4.9486 2.9829 22 6 -2.2051 3.8802 3.3739 23 6 -2.5438 3.9655 4.8634 24 6 -3.4676 4.0147 2.5201 25 1 -0.3633 -0.9592 0.3688 26 1 -0.3634 0.7991 0.6463 27 1 -0.3633 0.1603 -1.0151 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.0823 1.3938 -3.6480 31 1 0.8941 -0.2023 1.8626 32 1 -1.0371 -0.7474 3.2792 33 1 -2.5531 1.0402 4.0394 34 1 -0.5564 5.2349 3.8465 35 1 -1.6396 5.8201 2.5410 36 1 -2.9730 4.9432 5.0830 37 1 -3.2633 3.1873 5.1176 38 1 -1.6361 3.8270 5.4509 39 1 -3.2068 3.9104 1.4668 40 1 -4.1782 3.2360 2.7972 41 1 -3.9172 4.9933 2.6880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279266027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = 13.536955 kcal Electronic energy + Delta-G solvation = -24171.259807 eV Core-core repulsion = 20826.002331 eV Total energy + Delta-G solvation = -3345.257476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26347 -39.12807 -36.79734 -34.93259 -34.90402 -32.44442 -30.44264 -29.73429 -28.56228 -27.40915 -26.32151 -25.15919 -23.19288 -22.47197 -21.69937 -20.36513 -18.50016 -17.16092 -17.02389 -16.10197 -15.97443 -15.41156 -15.04207 -14.68092 -14.22002 -14.06243 -13.68145 -13.49256 -13.36868 -13.10681 -12.92008 -12.70806 -12.49206 -12.22388 -11.87021 -11.44784 -11.43779 -11.32780 -11.18921 -11.14546 -11.04036 -10.91647 -10.59718 -10.44414 -10.32534 -10.15817 -9.92026 -8.82358 -8.31474 -7.84761 -7.75470 -7.31697 -6.35426 -3.92278 1.47780 1.75102 3.17483 3.29578 3.37191 3.61377 3.80745 4.12922 4.35204 4.44763 4.64212 4.85610 4.88897 4.96975 5.08449 5.22655 5.36869 5.45813 5.53283 5.54493 5.62840 5.70017 5.75720 5.78636 5.85261 5.89396 5.91455 6.02073 6.18713 6.24375 6.27113 6.40137 6.45479 6.64256 6.74099 6.78352 6.86793 6.97282 7.19346 7.58855 7.63856 8.43239 8.59888 9.24874 9.40726 10.09431 10.67387 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.005235 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.582790 B = 5346.964690 C = 5754.846791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.118 3.882 3 N -0.442 5.442 4 C -0.337 4.337 5 H 0.088 0.912 6 C 0.057 3.943 7 N -0.833 5.833 8 Si 0.898 3.102 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.516 3.484 13 O -0.559 6.559 14 C -0.145 4.145 15 C -0.041 4.041 16 C -0.186 4.186 17 C -0.055 4.055 18 C -0.189 4.189 19 C 0.157 3.843 20 O -0.280 6.280 21 C 0.054 3.946 22 C -0.051 4.051 23 C -0.132 4.132 24 C -0.133 4.133 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.266 0.734 31 H 0.152 0.848 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -2.163 11.540 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.006 4.006 3 N -0.163 5.163 4 C -0.463 4.463 5 H 0.105 0.895 6 C -0.152 4.152 7 N -0.466 5.466 8 Si 0.723 3.277 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.208 1.208 12 C 0.305 3.695 13 O -0.440 6.440 14 C -0.149 4.149 15 C -0.059 4.059 16 C -0.205 4.205 17 C -0.074 4.074 18 C -0.190 4.190 19 C 0.110 3.890 20 O -0.192 6.192 21 C -0.021 4.021 22 C -0.051 4.051 23 C -0.189 4.189 24 C -0.190 4.190 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.922 -1.522 11.249 15.077 hybrid contribution 0.215 -0.331 -0.821 0.911 sum -9.708 -1.853 10.428 14.368 Atomic orbital electron populations 1.23305 0.97096 1.01666 1.04166 1.21581 0.93642 0.85392 0.99984 1.43234 1.42869 1.06954 1.23213 1.19141 1.02466 1.40684 0.84029 0.89466 1.25430 0.95960 0.95942 0.97892 1.70257 1.18551 1.40693 1.17134 0.86381 0.82849 0.78123 0.80351 1.18891 1.20549 1.20817 1.18216 0.83884 0.83972 0.83437 1.90621 1.55171 1.27044 1.71206 1.19701 0.98930 0.91722 1.04545 1.21755 0.97010 0.95343 0.91786 1.20789 0.97529 0.98976 1.03168 1.20191 0.98519 0.90534 0.98119 1.20497 0.97801 0.95073 1.05641 1.19342 0.92508 0.84046 0.93110 1.86969 1.67786 1.15241 1.49201 1.23980 0.90873 0.95297 0.91989 1.20745 0.95679 0.91735 0.96916 1.21733 1.01871 1.01872 0.93439 1.21776 0.95538 1.01647 1.00078 0.93396 0.88680 0.91296 0.90631 0.93757 0.92447 0.83058 0.85663 0.86520 0.90693 0.88010 0.92206 0.92067 0.92147 0.91916 0.92100 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.03 7.99 37.16 0.30 -3.74 16 2 C 0.12 2.52 5.50 -4.04 -0.02 2.50 16 3 N -0.44 -11.65 2.65 -116.03 -0.31 -11.96 16 4 C -0.34 -9.63 8.58 -14.99 -0.13 -9.76 16 5 H 0.09 2.63 7.98 -52.49 -0.42 2.21 16 6 C 0.06 1.54 4.50 -17.45 -0.08 1.46 16 7 N -0.83 -23.12 13.62 55.50 0.76 -22.36 16 8 Si 0.90 20.45 29.67 -169.99 -5.04 15.41 16 9 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.52 13.88 7.15 -12.52 -0.09 13.79 16 13 O -0.56 -17.13 16.61 4.46 0.07 -17.06 16 14 C -0.14 -3.18 4.10 -104.72 -0.43 -3.61 16 15 C -0.04 -0.71 5.48 -39.25 -0.21 -0.93 16 16 C -0.19 -2.67 10.03 -39.60 -0.40 -3.07 16 17 C -0.06 -0.77 9.91 -39.63 -0.39 -1.17 16 18 C -0.19 -3.04 5.05 -104.12 -0.53 -3.57 16 19 C 0.16 3.25 6.70 -38.42 -0.26 2.99 16 20 O -0.28 -5.96 10.72 -20.10 -0.22 -6.18 16 21 C 0.05 0.80 7.10 38.06 0.27 1.07 16 22 C -0.05 -0.66 1.03 -154.28 -0.16 -0.82 16 23 C -0.13 -1.31 8.53 37.15 0.32 -0.99 16 24 C -0.13 -1.55 8.61 37.16 0.32 -1.23 16 25 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 26 H 0.10 1.97 3.09 -81.10 -0.25 1.72 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.67 7.35 -51.93 -0.38 1.29 16 29 H 0.04 0.81 6.07 -51.93 -0.32 0.49 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.15 2.48 3.83 -52.49 -0.20 2.28 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 34 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 35 H 0.10 1.25 7.92 -51.93 -0.41 0.84 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -34.27 328.30 -7.02 -41.29 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.74 Total: 2.96 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.49 Total: -7.06 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.45 Total: -34.32 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.14 Total: -23.23 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.27 -7.02 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279266027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.828 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds