Wall clock time and date at job start Tue Mar 31 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47005 * 2 1 4 4 C 1.36908 * 119.99872 * 236.66036 * 3 2 1 5 5 H 1.08000 * 120.00260 * 228.84515 * 4 3 2 6 6 C 1.39030 * 119.99845 * 48.84558 * 4 3 2 7 7 N 1.31383 * 119.99891 * 34.69443 * 6 4 3 8 8 Si 1.86798 * 119.99988 * 214.69104 * 6 4 3 9 9 H 1.48501 * 109.47237 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46964 * 119.99975 * 8 6 4 11 11 H 1.48495 * 109.47208 * 240.00287 * 8 6 4 12 12 C 1.34775 * 120.00242 * 56.65849 * 3 2 1 13 13 O 1.21628 * 119.99726 * 163.49305 * 12 3 2 14 14 C 1.47423 * 119.99849 * 343.77394 * 12 3 2 15 15 C 1.39586 * 120.05833 * 36.16817 * 14 12 3 16 16 C 1.37778 * 120.17837 * 179.87442 * 15 14 12 17 17 C 1.38649 * 119.97943 * 0.33446 * 16 15 14 18 18 C 1.37680 * 120.33579 * 359.73075 * 17 16 15 19 19 C 1.38854 * 120.87755 * 0.27876 * 18 17 16 20 20 O 1.35863 * 111.32608 * 179.30975 * 19 18 17 21 21 C 1.43769 * 109.28750 * 18.84236 * 20 19 18 22 22 C 1.51675 * 132.13175 * 180.53116 * 18 17 16 23 23 C 1.52991 * 110.94728 * 46.12750 * 22 18 17 24 24 C 1.53001 * 110.97955 * 282.43330 * 22 18 17 25 25 H 1.08997 * 109.47125 * 201.03108 * 1 2 3 26 26 H 1.09004 * 109.47377 * 321.03495 * 1 2 3 27 27 H 1.09004 * 109.47112 * 81.02879 * 1 2 3 28 28 H 1.08996 * 109.47312 * 240.00017 * 2 1 3 29 29 H 1.08993 * 109.47373 * 120.00014 * 2 1 3 30 30 H 0.97003 * 119.99616 * 180.02562 * 7 6 4 31 31 H 1.07997 * 119.91372 * 0.12305 * 15 14 12 32 32 H 1.08001 * 120.00741 * 180.08986 * 16 15 14 33 33 H 1.08011 * 119.83614 * 179.70340 * 17 16 15 34 34 H 1.08996 * 110.75950 * 90.67497 * 21 20 19 35 35 H 1.09000 * 110.75108 * 214.03641 * 21 20 19 36 36 H 1.09004 * 109.47402 * 173.94860 * 23 22 18 37 37 H 1.08995 * 109.47426 * 293.95635 * 23 22 18 38 38 H 1.09007 * 109.47184 * 53.95209 * 23 22 18 39 39 H 1.09004 * 109.47370 * 306.03675 * 24 22 18 40 40 H 1.08999 * 109.46640 * 66.03012 * 24 22 18 41 41 H 1.08992 * 109.47086 * 186.02777 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8608 1.8094 -0.9905 5 1 3.7661 2.3412 -0.7371 6 6 2.5511 1.5597 -2.3227 7 7 1.2984 1.5684 -2.7186 8 14 3.9160 1.2119 -3.5496 9 1 5.2285 1.2591 -2.8565 10 1 3.7177 -0.1353 -4.1420 11 1 3.8870 2.2350 -4.6256 12 6 1.6381 2.2305 0.9751 13 8 2.2555 3.2624 1.1576 14 6 0.4777 1.9056 1.8243 15 6 0.2319 0.5829 2.1962 16 6 -0.8504 0.2768 2.9920 17 6 -1.7026 1.2834 3.4196 18 6 -1.4705 2.5914 3.0578 19 6 -0.3875 2.9277 2.2566 20 8 -0.3524 4.2630 2.0082 21 6 -1.1566 4.9486 2.9829 22 6 -2.2051 3.8802 3.3739 23 6 -2.5438 3.9655 4.8634 24 6 -3.4676 4.0147 2.5201 25 1 -0.3633 -0.9592 0.3688 26 1 -0.3634 0.7991 0.6463 27 1 -0.3633 0.1603 -1.0151 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.0823 1.3938 -3.6480 31 1 0.8941 -0.2023 1.8626 32 1 -1.0371 -0.7474 3.2792 33 1 -2.5531 1.0402 4.0394 34 1 -0.5564 5.2349 3.8465 35 1 -1.6396 5.8201 2.5410 36 1 -2.9730 4.9432 5.0830 37 1 -3.2633 3.1873 5.1176 38 1 -1.6361 3.8270 5.4509 39 1 -3.2068 3.9104 1.4668 40 1 -4.1782 3.2360 2.7972 41 1 -3.9172 4.9933 2.6880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279266027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:57 Heat of formation + Delta-G solvation = -9.384523 kcal Electronic energy + Delta-G solvation = -24172.253756 eV Core-core repulsion = 20826.002331 eV Total energy + Delta-G solvation = -3346.251426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59528 -40.80188 -38.37921 -36.88202 -36.07889 -34.33215 -32.12689 -31.17494 -30.03668 -28.23155 -27.39795 -27.14632 -24.75081 -24.03458 -23.06714 -21.84889 -19.97886 -19.06716 -18.47012 -17.55068 -17.42619 -16.88781 -16.68493 -16.30353 -15.98023 -15.55337 -15.14091 -14.84519 -14.77918 -14.52290 -14.26114 -13.87217 -13.76967 -13.69101 -13.24445 -13.10786 -13.00789 -12.77105 -12.62710 -12.49432 -12.36820 -12.23779 -12.13034 -11.98368 -11.73578 -11.56054 -11.28007 -10.88555 -10.34045 -9.41993 -9.27668 -9.02813 -8.43434 -6.10902 0.11753 0.45969 1.33707 1.39053 1.54952 2.05774 2.30716 2.43033 2.74015 2.87122 3.10259 3.31707 3.58539 3.91097 3.95763 3.98680 4.15099 4.24600 4.31824 4.43447 4.47721 4.49495 4.56589 4.61735 4.73654 4.79874 4.86410 4.96324 4.97098 5.00184 5.12281 5.16607 5.24353 5.38047 5.38321 5.45863 5.47713 5.52916 5.61470 5.78915 6.23372 6.28249 6.59582 7.15985 7.38248 8.05945 8.59329 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.005235 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.582790 B = 5346.964690 C = 5754.846791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.114 3.886 3 N -0.454 5.454 4 C -0.379 4.379 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.861 5.861 8 Si 0.973 3.027 9 H -0.268 1.268 10 H -0.257 1.257 11 H -0.280 1.280 12 C 0.499 3.501 13 O -0.624 6.624 14 C -0.187 4.187 15 C -0.043 4.043 16 C -0.167 4.167 17 C -0.040 4.040 18 C -0.185 4.185 19 C 0.120 3.880 20 O -0.333 6.333 21 C 0.040 3.960 22 C -0.043 4.043 23 C -0.126 4.126 24 C -0.130 4.130 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.274 0.726 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.081 0.919 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 -4.686 13.417 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.008 4.008 3 N -0.174 5.174 4 C -0.506 4.506 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.494 5.494 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.181 1.181 11 H -0.206 1.206 12 C 0.290 3.710 13 O -0.510 6.510 14 C -0.191 4.191 15 C -0.061 4.061 16 C -0.184 4.184 17 C -0.058 4.058 18 C -0.186 4.186 19 C 0.073 3.927 20 O -0.247 6.247 21 C -0.034 4.034 22 C -0.043 4.043 23 C -0.183 4.183 24 C -0.187 4.187 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.183 0.817 34 H 0.098 0.902 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.943 -4.090 13.128 18.884 hybrid contribution 1.074 0.519 -1.320 1.779 sum -11.869 -3.570 11.808 17.119 Atomic orbital electron populations 1.23201 0.95399 1.04075 1.02293 1.21809 0.95106 0.82853 1.01035 1.43504 1.42630 1.08859 1.22365 1.19067 1.02561 1.43100 0.85863 0.93000 1.26250 0.98467 0.94612 0.98910 1.70295 1.20340 1.40751 1.18053 0.85271 0.79143 0.78770 0.77331 1.19196 1.18121 1.20558 1.19106 0.84679 0.83211 0.83974 1.90535 1.57487 1.29690 1.73336 1.19555 0.98230 0.94559 1.06741 1.21818 0.98481 0.93245 0.92544 1.21330 0.95256 1.01404 1.00460 1.20809 0.99109 0.89160 0.96715 1.20963 0.96349 0.97290 1.03951 1.19808 0.94360 0.83751 0.94745 1.86886 1.69604 1.16534 1.51682 1.24373 0.91341 0.96337 0.91375 1.20823 0.95062 0.88996 0.99414 1.21728 1.02220 1.04018 0.90312 1.21776 0.95239 1.03914 0.97760 0.88482 0.89308 0.94566 0.91906 0.90154 0.91650 0.82403 0.80786 0.81672 0.90189 0.86351 0.90117 0.89845 0.92848 0.95172 0.89974 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.45 7.99 71.98 0.57 -6.88 16 2 C 0.11 4.97 5.50 86.38 0.47 5.44 16 3 N -0.45 -25.42 2.65 -639.26 -1.69 -27.11 16 4 C -0.38 -23.24 8.58 84.09 0.72 -22.52 16 5 H 0.05 3.45 7.98 -2.91 -0.02 3.43 16 6 C 0.03 1.41 4.50 84.95 0.38 1.80 16 7 N -0.86 -49.46 13.62 21.68 0.30 -49.16 16 8 Si 0.97 43.39 29.67 68.60 2.04 45.43 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.50 28.91 7.15 86.66 0.62 29.53 16 13 O -0.62 -42.06 16.61 -3.36 -0.06 -42.12 16 14 C -0.19 -8.51 4.10 -19.93 -0.08 -8.59 16 15 C -0.04 -1.43 5.48 22.49 0.12 -1.31 16 16 C -0.17 -3.96 10.03 22.26 0.22 -3.74 16 17 C -0.04 -0.92 9.91 22.24 0.22 -0.70 16 18 C -0.18 -5.57 5.05 -19.54 -0.10 -5.66 16 19 C 0.12 5.14 6.70 23.02 0.15 5.29 16 20 O -0.33 -15.23 10.72 -91.26 -0.98 -16.21 16 21 C 0.04 1.20 7.10 72.57 0.52 1.72 16 22 C -0.04 -1.02 1.03 -52.03 -0.05 -1.07 16 23 C -0.13 -1.97 8.53 71.98 0.61 -1.35 16 24 C -0.13 -2.67 8.61 71.98 0.62 -2.05 16 25 H 0.10 2.70 7.92 -2.39 -0.02 2.68 16 26 H 0.09 3.67 3.09 -29.79 -0.09 3.58 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 2.83 7.35 -2.39 -0.02 2.81 16 29 H 0.08 2.86 6.07 -2.39 -0.01 2.85 16 30 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.16 4.85 3.83 -2.91 -0.01 4.84 16 32 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 35 H 0.12 2.96 7.92 -2.39 -0.02 2.94 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -85.92 328.30 5.56 -80.35 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.95 Total: 18.93 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.01 Total: -10.11 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -1.40 Total: -76.27 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -1.03 Total: -58.33 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.04 Total: 45.43 kcal Total: -85.92 5.56 -80.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279266027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.970 kcal (2) G-P(sol) polarization free energy of solvation -85.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds