Wall clock time and date at job start Tue Mar 31 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99611 * 2 1 4 4 H 1.08008 * 119.99782 * 201.45603 * 3 2 1 5 5 C 1.38946 * 120.00475 * 21.46134 * 3 2 1 6 6 N 1.31412 * 119.99599 * 14.77423 * 5 3 2 7 7 Si 1.86792 * 120.00258 * 194.77713 * 5 3 2 8 8 H 1.48506 * 109.47409 * 89.99907 * 7 5 3 9 9 H 1.48501 * 109.47301 * 209.99980 * 7 5 3 10 10 H 1.48499 * 109.47231 * 329.99819 * 7 5 3 11 11 C 1.34774 * 120.00420 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00269 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99775 * 359.97438 * 11 2 1 14 14 O 1.42901 * 109.47304 * 179.97438 * 13 11 2 15 15 C 1.42894 * 114.00070 * 184.58062 * 14 13 11 16 16 H 1.09001 * 109.25475 * 328.03664 * 15 14 13 17 17 C 1.52742 * 109.25316 * 87.50526 * 15 14 13 18 18 C 1.53318 * 108.38276 * 171.37500 * 17 15 14 19 19 C 1.52736 * 108.38764 * 290.11603 * 18 17 15 20 20 C 1.50636 * 110.58531 * 51.09228 * 19 18 17 21 21 C 1.38907 * 117.74896 * 162.51556 * 20 19 18 22 22 C 1.37929 * 120.54829 * 179.69152 * 21 20 19 23 23 C 1.38268 * 119.76650 * 0.21006 * 22 21 20 24 24 C 1.37937 * 119.77559 * 359.54746 * 23 22 21 25 25 C 1.37670 * 122.56436 * 342.29330 * 20 19 18 26 26 H 1.09001 * 109.46590 * 271.43386 * 1 2 3 27 27 H 1.08998 * 109.47637 * 31.43280 * 1 2 3 28 28 H 1.09004 * 109.47079 * 151.43710 * 1 2 3 29 29 H 0.97005 * 120.00137 * 179.97438 * 6 5 3 30 30 H 1.09008 * 109.47066 * 60.00143 * 13 11 2 31 31 H 1.08994 * 109.47111 * 300.00393 * 13 11 2 32 32 H 1.09000 * 109.67842 * 51.65668 * 17 15 14 33 33 H 1.09001 * 109.71228 * 291.12192 * 17 15 14 34 34 H 1.09007 * 109.68468 * 170.39108 * 18 17 15 35 35 H 1.08998 * 109.71572 * 49.85841 * 18 17 15 36 36 H 1.09000 * 109.25398 * 290.80844 * 19 18 17 37 37 H 1.08995 * 109.22444 * 171.35621 * 19 18 17 38 38 H 1.07997 * 119.72681 * 359.72053 * 21 20 19 39 39 H 1.07996 * 120.11830 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.11208 * 179.80441 * 23 22 21 41 41 H 1.08000 * 119.73202 * 180.30507 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1743 1.2198 -0.3422 5 6 1.5279 2.3490 0.4402 6 7 0.4056 2.2758 1.1199 7 14 2.2864 4.0145 0.0660 8 1 1.7599 4.5188 -1.2278 9 1 1.9396 4.9707 1.1480 10 1 3.7626 3.8781 -0.0197 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 8 2.3141 -3.5584 -0.0017 15 6 1.7027 -4.8457 -0.1061 16 1 0.7289 -4.8219 0.3831 17 6 1.5169 -5.1970 -1.5809 18 6 1.0644 -6.6588 -1.6765 19 6 2.2369 -7.5531 -1.2786 20 6 2.8155 -7.1122 0.0404 21 6 3.6239 -8.0109 0.7248 22 6 4.1889 -7.6650 1.9345 23 6 3.9457 -6.4150 2.4734 24 6 3.1473 -5.5193 1.7930 25 6 2.5753 -5.8668 0.5757 26 1 -0.3632 0.0257 1.0274 27 1 -0.3634 0.8768 -0.5359 28 1 -0.3633 -0.9026 -0.4914 29 1 -0.0289 3.0867 1.4276 30 1 0.7584 -2.5299 -0.8904 31 1 0.7591 -2.5302 0.8896 32 1 2.4611 -5.0697 -2.1103 33 1 0.7591 -4.5485 -2.0207 34 1 0.7619 -6.8834 -2.6994 35 1 0.2267 -6.8293 -1.0003 36 1 3.0085 -7.4968 -2.0464 37 1 1.8898 -8.5827 -1.1926 38 1 3.8120 -8.9884 0.3059 39 1 4.8160 -8.3692 2.4609 40 1 4.3827 -6.1395 3.4218 41 1 2.9619 -4.5414 2.2121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280455022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:24 Heat of formation + Delta-G solvation = -53.987942 kcal Electronic energy + Delta-G solvation = -22798.691056 eV Core-core repulsion = 19450.505481 eV Total energy + Delta-G solvation = -3348.185575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19037 -38.56394 -37.16053 -35.44804 -34.54163 -31.84862 -31.56536 -30.26263 -28.61598 -27.46758 -25.97250 -24.08595 -23.35754 -22.72328 -21.90999 -19.53486 -19.10183 -17.09547 -16.79264 -16.20112 -15.81884 -15.65124 -15.25108 -14.98870 -14.61731 -14.29133 -13.97222 -13.76237 -13.43830 -13.24607 -13.08213 -12.68969 -12.34655 -12.24742 -11.95864 -11.59740 -11.50714 -11.29931 -11.28083 -11.22925 -10.98174 -10.87528 -10.68340 -10.35561 -10.33708 -10.24485 -9.34276 -9.02363 -8.68848 -8.54414 -8.30392 -7.68718 -6.31821 -3.86122 1.35464 1.44893 3.17404 3.26103 3.31504 3.61104 3.87518 3.93559 4.23539 4.58528 4.61244 4.84523 4.93227 5.03900 5.07359 5.11183 5.15108 5.23834 5.26472 5.38641 5.48146 5.59408 5.66622 5.73283 5.76626 5.81292 5.88676 5.90470 5.96609 6.09902 6.16430 6.23207 6.28612 6.51628 6.60444 6.70748 6.82666 7.05676 7.16934 7.45678 7.58250 8.14189 8.50475 9.20401 9.41564 9.98898 10.72723 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.003477 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.888907 B = 8050.097213 C = 8567.856646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.447 5.447 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.448 3.552 12 O -0.569 6.569 13 C 0.054 3.946 14 O -0.347 6.347 15 C 0.127 3.873 16 H 0.069 0.931 17 C -0.143 4.143 18 C -0.116 4.116 19 C -0.081 4.081 20 C -0.069 4.069 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.088 4.088 25 C -0.075 4.075 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.025 0.975 29 H 0.267 0.733 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -18.729 -2.040 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.168 5.168 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.754 3.246 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.235 3.765 12 O -0.452 6.452 13 C -0.026 4.026 14 O -0.265 6.265 15 C 0.069 3.931 16 H 0.086 0.914 17 C -0.181 4.181 18 C -0.153 4.153 19 C -0.118 4.118 20 C -0.069 4.069 21 C -0.148 4.148 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.106 4.106 25 C -0.076 4.076 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.724 -18.549 -1.938 18.730 hybrid contribution -0.171 0.915 0.003 0.931 sum -1.894 -17.634 -1.935 17.841 Atomic orbital electron populations 1.21521 0.81184 0.98958 1.01666 1.43525 1.05434 1.04430 1.63455 1.19677 0.99205 0.83304 1.41084 0.88229 1.25316 0.96659 1.00022 0.95306 1.70012 1.18661 1.29200 1.34375 0.85911 0.79667 0.81139 0.77924 1.20376 1.20973 1.19319 1.19681 0.88191 0.84152 0.84473 1.90546 1.13692 1.86696 1.54234 1.22324 0.92033 0.87615 1.00675 1.88135 1.31979 1.12028 1.94392 1.20746 0.94646 0.83221 0.94476 0.91363 1.22077 1.02808 0.96365 0.96819 1.21510 0.97698 0.94455 1.01687 1.20497 0.97840 0.99322 0.94136 1.19552 0.97754 0.93420 0.96173 1.21043 0.98691 0.99319 0.95785 1.21056 0.99791 0.96747 0.96028 1.21108 0.99283 0.94025 1.00266 1.21260 0.95801 0.99412 0.94176 1.19445 0.99371 0.93552 0.95189 0.92353 0.91086 0.95673 0.92268 0.91967 0.91698 0.90413 0.91150 0.91110 0.91570 0.90486 0.90837 0.86342 0.86300 0.86068 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 8.53 59.85 0.51 2.95 16 2 N -0.45 -11.67 3.02 -122.19 -0.37 -12.04 16 3 C -0.30 -8.66 9.29 -14.93 -0.14 -8.80 16 4 H 0.10 2.97 7.41 -52.48 -0.39 2.59 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -23.58 10.75 55.50 0.60 -22.98 16 7 Si 0.93 20.92 29.58 -169.99 -5.03 15.89 16 8 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 11 C 0.45 11.42 7.70 -10.98 -0.08 11.34 16 12 O -0.57 -16.88 16.18 -14.36 -0.23 -17.11 16 13 C 0.05 1.04 4.72 36.01 0.17 1.21 16 14 O -0.35 -6.76 8.70 -55.14 -0.48 -7.24 16 15 C 0.13 1.88 2.59 -28.05 -0.07 1.81 16 16 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 17 C -0.14 -1.79 5.48 -26.70 -0.15 -1.94 16 18 C -0.12 -1.11 5.98 -26.70 -0.16 -1.27 16 19 C -0.08 -0.79 5.67 -28.05 -0.16 -0.95 16 20 C -0.07 -0.86 5.74 -104.61 -0.60 -1.46 16 21 C -0.13 -1.46 9.61 -39.45 -0.38 -1.84 16 22 C -0.12 -1.34 10.05 -39.68 -0.40 -1.74 16 23 C -0.13 -1.65 10.05 -39.68 -0.40 -2.05 16 24 C -0.09 -1.33 9.24 -39.44 -0.36 -1.70 16 25 C -0.08 -1.10 5.57 -104.62 -0.58 -1.68 16 26 H 0.06 1.33 7.59 -51.93 -0.39 0.94 16 27 H 0.07 1.64 7.04 -51.93 -0.37 1.28 16 28 H 0.02 0.45 6.39 -51.93 -0.33 0.11 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.06 1.04 7.02 -51.92 -0.36 0.68 16 31 H 0.07 1.14 8.11 -51.93 -0.42 0.71 16 32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 38 H 0.12 1.03 8.05 -52.49 -0.42 0.60 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.13 2.06 7.68 -52.49 -0.40 1.66 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -33.00 334.77 -9.35 -42.35 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.99 Total: 1.50 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.89 Total: -5.41 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.23 Total: -35.03 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.71 Total: -24.35 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.00 -9.35 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280455022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.636 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds