Wall clock time and date at job start Tue Mar 31 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99611 * 2 1 4 4 H 1.08008 * 119.99782 * 201.45603 * 3 2 1 5 5 C 1.38946 * 120.00475 * 21.46134 * 3 2 1 6 6 N 1.31412 * 119.99599 * 14.77423 * 5 3 2 7 7 Si 1.86792 * 120.00258 * 194.77713 * 5 3 2 8 8 H 1.48506 * 109.47409 * 89.99907 * 7 5 3 9 9 H 1.48501 * 109.47301 * 209.99980 * 7 5 3 10 10 H 1.48499 * 109.47231 * 329.99819 * 7 5 3 11 11 C 1.34774 * 120.00420 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00269 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99775 * 359.97438 * 11 2 1 14 14 O 1.42901 * 109.47304 * 179.97438 * 13 11 2 15 15 C 1.42894 * 114.00070 * 184.58062 * 14 13 11 16 16 H 1.09001 * 109.25475 * 328.03664 * 15 14 13 17 17 C 1.52742 * 109.25316 * 87.50526 * 15 14 13 18 18 C 1.53318 * 108.38276 * 171.37500 * 17 15 14 19 19 C 1.52736 * 108.38764 * 290.11603 * 18 17 15 20 20 C 1.50636 * 110.58531 * 51.09228 * 19 18 17 21 21 C 1.38907 * 117.74896 * 162.51556 * 20 19 18 22 22 C 1.37929 * 120.54829 * 179.69152 * 21 20 19 23 23 C 1.38268 * 119.76650 * 0.21006 * 22 21 20 24 24 C 1.37937 * 119.77559 * 359.54746 * 23 22 21 25 25 C 1.37670 * 122.56436 * 342.29330 * 20 19 18 26 26 H 1.09001 * 109.46590 * 271.43386 * 1 2 3 27 27 H 1.08998 * 109.47637 * 31.43280 * 1 2 3 28 28 H 1.09004 * 109.47079 * 151.43710 * 1 2 3 29 29 H 0.97005 * 120.00137 * 179.97438 * 6 5 3 30 30 H 1.09008 * 109.47066 * 60.00143 * 13 11 2 31 31 H 1.08994 * 109.47111 * 300.00393 * 13 11 2 32 32 H 1.09000 * 109.67842 * 51.65668 * 17 15 14 33 33 H 1.09001 * 109.71228 * 291.12192 * 17 15 14 34 34 H 1.09007 * 109.68468 * 170.39108 * 18 17 15 35 35 H 1.08998 * 109.71572 * 49.85841 * 18 17 15 36 36 H 1.09000 * 109.25398 * 290.80844 * 19 18 17 37 37 H 1.08995 * 109.22444 * 171.35621 * 19 18 17 38 38 H 1.07997 * 119.72681 * 359.72053 * 21 20 19 39 39 H 1.07996 * 120.11830 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.11208 * 179.80441 * 23 22 21 41 41 H 1.08000 * 119.73202 * 180.30507 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1743 1.2198 -0.3422 5 6 1.5279 2.3490 0.4402 6 7 0.4056 2.2758 1.1199 7 14 2.2864 4.0145 0.0660 8 1 1.7599 4.5188 -1.2278 9 1 1.9396 4.9707 1.1480 10 1 3.7626 3.8781 -0.0197 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 8 2.3141 -3.5584 -0.0017 15 6 1.7027 -4.8457 -0.1061 16 1 0.7289 -4.8219 0.3831 17 6 1.5169 -5.1970 -1.5809 18 6 1.0644 -6.6588 -1.6765 19 6 2.2369 -7.5531 -1.2786 20 6 2.8155 -7.1122 0.0404 21 6 3.6239 -8.0109 0.7248 22 6 4.1889 -7.6650 1.9345 23 6 3.9457 -6.4150 2.4734 24 6 3.1473 -5.5193 1.7930 25 6 2.5753 -5.8668 0.5757 26 1 -0.3632 0.0257 1.0274 27 1 -0.3634 0.8768 -0.5359 28 1 -0.3633 -0.9026 -0.4914 29 1 -0.0289 3.0867 1.4276 30 1 0.7584 -2.5299 -0.8904 31 1 0.7591 -2.5302 0.8896 32 1 2.4611 -5.0697 -2.1103 33 1 0.7591 -4.5485 -2.0207 34 1 0.7619 -6.8834 -2.6994 35 1 0.2267 -6.8293 -1.0003 36 1 3.0085 -7.4968 -2.0464 37 1 1.8898 -8.5827 -1.1926 38 1 3.8120 -8.9884 0.3059 39 1 4.8160 -8.3692 2.4609 40 1 4.3827 -6.1395 3.4218 41 1 2.9619 -4.5414 2.2121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280455022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:23 Heat of formation + Delta-G solvation = -72.606679 kcal Electronic energy + Delta-G solvation = -22799.498425 eV Core-core repulsion = 19450.505481 eV Total energy + Delta-G solvation = -3348.992944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23141 -40.36893 -38.52417 -36.72054 -36.30123 -33.74061 -32.78634 -31.18101 -29.86675 -28.93409 -27.78517 -25.98183 -24.36934 -23.63629 -22.90320 -21.09904 -20.33115 -18.95538 -18.38329 -17.44349 -17.36172 -17.03103 -16.51624 -16.34945 -16.05535 -15.82682 -15.37696 -15.05563 -14.70036 -14.37309 -14.19852 -13.95493 -13.74907 -13.54166 -13.26757 -13.19782 -13.11997 -12.98044 -12.65903 -12.49175 -12.29635 -12.25771 -12.14760 -11.87378 -11.63564 -11.32639 -11.05011 -10.59715 -10.34973 -9.74719 -9.67383 -9.48660 -8.37451 -6.01418 0.38655 0.47606 1.35777 1.40011 1.52355 1.93975 2.15982 2.46026 2.87058 3.04242 3.34239 3.67127 3.75374 3.93375 3.97464 4.05101 4.12399 4.17177 4.22062 4.31378 4.34307 4.36638 4.53567 4.59676 4.65480 4.75864 4.93375 4.98157 4.99810 5.02740 5.12629 5.14840 5.28323 5.33595 5.37776 5.42372 5.58990 5.63290 5.71969 5.98307 6.11819 6.22356 6.48744 7.13571 7.39775 7.97644 8.65017 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.003477 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.888907 B = 8050.097213 C = 8567.856646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.459 5.459 3 C -0.349 4.349 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.893 5.893 7 Si 0.991 3.009 8 H -0.262 1.262 9 H -0.271 1.271 10 H -0.278 1.278 11 C 0.432 3.568 12 O -0.626 6.626 13 C 0.070 3.930 14 O -0.382 6.382 15 C 0.121 3.879 16 H 0.082 0.918 17 C -0.141 4.141 18 C -0.109 4.109 19 C -0.081 4.081 20 C -0.075 4.075 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.141 4.141 24 C -0.120 4.120 25 C -0.101 4.101 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.275 0.725 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -20.672 -2.856 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.179 5.179 3 C -0.477 4.477 4 H 0.087 0.913 5 C -0.201 4.201 6 N -0.531 5.531 7 Si 0.814 3.186 8 H -0.187 1.187 9 H -0.196 1.196 10 H -0.203 1.203 11 C 0.221 3.779 12 O -0.513 6.513 13 C -0.010 4.010 14 O -0.301 6.301 15 C 0.064 3.936 16 H 0.100 0.900 17 C -0.179 4.179 18 C -0.147 4.147 19 C -0.118 4.118 20 C -0.075 4.075 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.159 4.159 24 C -0.138 4.138 25 C -0.101 4.101 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.122 -20.503 -2.750 20.921 hybrid contribution 0.267 1.473 0.314 1.529 sum -2.855 -19.030 -2.436 19.397 Atomic orbital electron populations 1.21536 0.78851 1.00681 1.01468 1.43803 1.06976 1.04199 1.62908 1.19613 0.98898 0.85426 1.43772 0.91333 1.26070 0.97001 1.02769 0.94274 1.70070 1.18958 1.30543 1.33521 0.84980 0.78200 0.76794 0.78629 1.18721 1.19582 1.20343 1.20766 0.88025 0.86046 0.83081 1.90492 1.16367 1.87832 1.56603 1.22108 0.91182 0.84711 1.02967 1.88097 1.33423 1.13729 1.94814 1.21043 0.95075 0.81146 0.96311 0.90047 1.22071 1.02172 0.98919 0.94746 1.21515 0.97842 0.91990 1.03326 1.20594 0.97917 1.00696 0.92544 1.19936 0.97618 0.92616 0.97310 1.21483 0.97428 1.00375 0.95405 1.21440 0.99486 0.96317 0.96252 1.21322 0.99082 0.94653 1.00803 1.21241 0.98025 0.99059 0.95477 1.19615 1.00419 0.94718 0.95314 0.93237 0.92413 0.90976 0.91485 0.88743 0.89707 0.92395 0.90363 0.88815 0.90736 0.90059 0.88065 0.83042 0.83290 0.85030 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.13 8.53 127.77 1.09 6.22 16 2 N -0.46 -24.56 3.02 -658.89 -1.99 -26.55 16 3 C -0.35 -20.59 9.29 84.04 0.78 -19.81 16 4 H 0.07 4.37 7.41 -2.91 -0.02 4.35 16 5 C 0.00 0.06 5.04 84.93 0.43 0.49 16 6 N -0.89 -47.50 10.75 21.66 0.23 -47.27 16 7 Si 0.99 43.09 29.58 68.60 2.03 45.12 16 8 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 C 0.43 22.80 7.70 87.66 0.68 23.48 16 12 O -0.63 -39.40 16.18 15.97 0.26 -39.14 16 13 C 0.07 2.70 4.72 71.24 0.34 3.03 16 14 O -0.38 -15.30 8.70 -129.95 -1.13 -16.43 16 15 C 0.12 3.56 2.59 29.74 0.08 3.64 16 16 H 0.08 2.09 7.84 -2.39 -0.02 2.07 16 17 C -0.14 -3.35 5.48 30.62 0.17 -3.18 16 18 C -0.11 -1.77 5.98 30.61 0.18 -1.59 16 19 C -0.08 -1.32 5.67 29.74 0.17 -1.15 16 20 C -0.07 -1.72 5.74 -19.86 -0.11 -1.83 16 21 C -0.13 -2.55 9.61 22.36 0.21 -2.33 16 22 C -0.12 -2.43 10.05 22.20 0.22 -2.21 16 23 C -0.14 -3.64 10.05 22.21 0.22 -3.41 16 24 C -0.12 -3.78 9.24 22.36 0.21 -3.58 16 25 C -0.10 -2.94 5.57 -19.86 -0.11 -3.05 16 26 H 0.05 2.23 7.59 -2.39 -0.02 2.22 16 27 H 0.06 2.65 7.04 -2.39 -0.02 2.63 16 28 H 0.07 2.43 6.39 -2.38 -0.02 2.41 16 29 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 30 H 0.09 2.99 7.02 -2.38 -0.02 2.98 16 31 H 0.09 2.91 8.11 -2.39 -0.02 2.89 16 32 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 33 H 0.08 1.69 7.83 -2.39 -0.02 1.67 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.12 8.13 -2.39 -0.02 1.10 16 38 H 0.15 1.95 8.05 -2.91 -0.02 1.93 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.10 3.59 7.68 -2.91 -0.02 3.56 16 Total: -1.00 -76.07 334.77 4.97 -71.10 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.02 Total: 18.45 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 4.55 Total: -5.29 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.76 Total: -73.82 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.87 Total: -55.57 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -76.07 4.97 -71.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280455022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.502 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds