Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42891 * 109.47254 * 2 1 4 4 C 1.42899 * 114.00150 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47296 * 180.02562 * 4 3 2 6 6 C 1.50694 * 115.55068 * 294.87292 * 5 4 3 7 7 O 1.21288 * 119.99837 * 247.06958 * 6 5 4 8 8 N 1.34778 * 120.00111 * 67.06736 * 6 5 4 9 9 C 1.39238 * 119.99637 * 185.42305 * 8 6 5 10 10 C 1.39486 * 119.83264 * 215.63591 * 9 8 6 11 11 C 1.36373 * 120.16765 * 180.26126 * 10 9 8 12 12 C 1.40873 * 119.83017 * 359.51638 * 11 10 9 13 13 C 1.41145 * 120.16536 * 180.27577 * 12 11 10 14 14 H 1.08002 * 120.00290 * 338.24418 * 13 12 11 15 15 C 1.39903 * 120.00380 * 158.23696 * 13 12 11 16 16 N 1.30874 * 119.99527 * 339.76878 * 15 13 12 17 17 Si 1.86796 * 120.00157 * 159.76364 * 15 13 12 18 18 H 1.48500 * 109.47108 * 94.99489 * 17 15 13 19 19 H 1.48507 * 109.46997 * 214.99114 * 17 15 13 20 20 H 1.48494 * 109.47351 * 334.98741 * 17 15 13 21 21 C 1.40869 * 119.66786 * 0.25908 * 12 11 10 22 22 C 1.36372 * 119.83298 * 359.97438 * 21 12 11 23 23 C 1.53006 * 117.49703 * 80.54412 * 5 4 3 24 24 C 1.53000 * 117.49698 * 149.19881 * 5 4 3 25 25 H 1.09007 * 109.46657 * 300.00141 * 1 2 3 26 26 H 1.09001 * 109.47144 * 59.99329 * 1 2 3 27 27 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46683 * 239.99773 * 2 1 3 29 29 H 1.09001 * 109.47144 * 120.00671 * 2 1 3 30 30 H 1.08999 * 109.46986 * 60.00017 * 4 3 2 31 31 H 1.09003 * 109.47132 * 300.00101 * 4 3 2 32 32 H 0.96997 * 119.99785 * 5.42543 * 8 6 5 33 33 H 1.08001 * 119.91439 * 0.05580 * 10 9 8 34 34 H 1.07996 * 120.08339 * 179.80218 * 11 10 9 35 35 H 0.96999 * 119.99929 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.08359 * 180.02562 * 21 12 11 37 37 H 1.07996 * 119.91481 * 180.02562 * 22 21 12 38 38 H 1.08998 * 117.49439 * 215.00474 * 23 5 4 39 39 H 1.08992 * 117.49782 * 0.02562 * 23 5 4 40 40 H 1.08996 * 117.50271 * 359.97438 * 24 5 4 41 41 H 1.09011 * 117.49849 * 144.97241 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 3.4400 3.7145 -1.2327 7 8 4.2997 4.1382 -1.9760 8 7 2.1400 3.9377 -1.5094 9 6 1.7786 4.5553 -2.7039 10 6 0.6921 5.4296 -2.7320 11 6 0.3289 6.0340 -3.8993 12 6 1.0604 5.7814 -5.0764 13 6 0.6943 6.4077 -6.2872 14 1 -0.3088 6.7860 -6.4177 15 6 1.6308 6.5386 -7.3182 16 7 2.9102 6.4587 -7.0541 17 14 1.0553 6.8271 -9.0717 18 1 1.0606 8.2837 -9.3611 19 1 1.9693 6.1321 -10.0134 20 1 -0.3214 6.2950 -9.2348 21 6 2.1594 4.9008 -5.0390 22 6 2.5077 4.3001 -3.8653 23 6 3.7928 3.6775 1.3393 24 6 5.1343 3.3198 0.6947 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8908 31 1 3.8341 0.9763 0.8892 32 1 1.4562 3.6682 -0.8764 33 1 0.1351 5.6257 -1.8278 34 1 -0.5145 6.7082 -3.9202 35 1 3.5595 6.5491 -7.7690 36 1 2.7251 4.7026 -5.9373 37 1 3.3502 3.6251 -3.8350 38 1 3.4925 4.7253 1.3286 39 1 3.4907 3.1106 2.2198 40 1 5.7140 2.5177 1.1515 41 1 5.7168 4.1320 0.2596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281526569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -40.731693 kcal Electronic energy + Delta-G solvation = -22650.099559 eV Core-core repulsion = 19302.488818 eV Total energy + Delta-G solvation = -3347.610741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.02123 -38.22563 -37.31015 -36.06642 -34.32431 -32.82765 -31.43772 -29.45017 -28.98675 -27.18489 -25.21196 -22.99771 -22.89825 -22.42762 -21.22864 -20.41548 -18.87920 -17.32060 -17.19694 -16.54070 -16.16725 -16.00998 -15.30888 -15.17472 -14.45820 -14.01485 -13.83401 -13.51258 -13.40737 -12.90450 -12.67316 -12.59534 -12.14828 -11.92739 -11.82711 -11.63899 -11.58101 -11.38613 -11.34922 -11.08665 -10.93363 -10.59853 -10.45928 -10.30305 -9.91149 -9.77044 -9.66363 -9.35413 -9.05386 -8.56030 -7.46003 -6.96598 -6.71571 -4.23094 2.61184 2.98118 3.09276 3.14379 3.16075 3.23047 3.48984 3.77709 3.93466 3.96173 4.59627 4.67129 4.82744 4.85290 4.90747 5.08055 5.09458 5.21670 5.25333 5.52741 5.53242 5.58205 5.74105 5.78408 5.80379 5.87002 6.01303 6.06408 6.23685 6.44964 6.90955 7.05451 7.05891 7.12711 7.22890 7.37265 7.65289 7.78204 8.05920 8.10110 8.28876 8.44299 8.67742 8.90929 8.93022 9.10429 10.19871 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003789 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.628541 B = 7388.561932 C = 7987.080496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.383 6.383 4 C 0.109 3.891 5 C -0.157 4.157 6 C 0.536 3.464 7 O -0.531 6.531 8 N -0.636 5.636 9 C -0.006 4.006 10 C -0.102 4.102 11 C -0.219 4.219 12 C 0.105 3.895 13 C -0.458 4.458 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.784 5.784 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.161 4.161 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.137 4.137 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.400 0.600 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.281 0.719 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -10.805 13.798 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.302 6.302 4 C 0.032 3.968 5 C -0.161 4.161 6 C 0.321 3.679 7 O -0.408 6.408 8 N -0.278 5.278 9 C -0.098 4.098 10 C -0.122 4.122 11 C -0.239 4.239 12 C 0.103 3.897 13 C -0.487 4.487 14 H 0.096 0.904 15 C -0.143 4.143 16 N -0.409 5.409 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.184 1.184 21 C -0.181 4.181 22 C -0.103 4.103 23 C -0.190 4.190 24 C -0.175 4.175 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.439 -10.340 13.150 16.735 hybrid contribution -0.299 -0.226 -0.476 0.606 sum 0.141 -10.566 12.674 16.501 Atomic orbital electron populations 1.21746 0.93583 1.02135 1.03466 1.22435 0.95754 0.83661 0.99840 1.87878 1.20487 1.26474 1.95377 1.21791 0.81804 0.92574 1.00617 1.21407 1.05102 0.95266 0.94316 1.19232 0.83049 0.80235 0.85364 1.90718 1.49511 1.50774 1.49804 1.42892 1.06774 1.58151 1.20003 1.17185 1.02429 1.05161 0.85020 1.20051 0.97695 0.97241 0.97195 1.20503 1.04669 1.06052 0.92647 1.17642 0.90669 0.89567 0.91863 1.19548 0.98246 1.33283 0.97672 0.90378 1.25953 0.94306 0.92732 1.01329 1.69886 1.01769 1.34526 1.34700 0.86342 0.80084 0.79075 0.81490 1.19586 1.20012 1.18375 1.21000 1.00808 0.99393 0.96892 1.20369 0.98284 0.99858 0.91800 1.23040 1.00526 1.01318 0.94165 1.22988 0.89867 1.03675 1.00935 0.91881 0.91394 0.91275 0.93396 0.93664 0.92464 0.92538 0.76596 0.89278 0.88729 0.90788 0.86143 0.88474 0.88145 0.87930 0.88012 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.58 6.66 37.16 0.25 0.83 16 3 O -0.38 -4.77 9.42 -35.23 -0.33 -5.10 16 4 C 0.11 1.29 5.76 37.16 0.21 1.51 16 5 C -0.16 -2.19 2.16 -155.66 -0.34 -2.52 16 6 C 0.54 10.34 6.74 -10.99 -0.07 10.27 16 7 O -0.53 -12.60 14.54 5.55 0.08 -12.52 16 8 N -0.64 -12.43 5.14 -9.74 -0.05 -12.48 16 9 C -0.01 -0.13 6.25 -83.57 -0.52 -0.66 16 10 C -0.10 -2.35 9.90 -39.79 -0.39 -2.74 16 11 C -0.22 -5.48 9.74 -39.26 -0.38 -5.87 16 12 C 0.11 2.90 5.60 -106.80 -0.60 2.30 16 13 C -0.46 -12.40 9.03 -37.86 -0.34 -12.74 16 14 H 0.08 2.01 7.92 -52.49 -0.42 1.59 16 15 C 0.08 1.94 5.11 -17.34 -0.09 1.85 16 16 N -0.78 -21.00 10.91 55.55 0.61 -20.39 16 17 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.16 -4.45 8.67 -39.26 -0.34 -4.79 16 22 C -0.08 -2.16 8.57 -39.79 -0.34 -2.51 16 23 C -0.15 -1.71 9.96 -26.69 -0.27 -1.98 16 24 C -0.14 -1.60 9.75 -26.70 -0.26 -1.86 16 25 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.40 6.75 8.11 -40.82 -0.33 6.42 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 36 H 0.12 3.43 6.03 -52.49 -0.32 3.12 16 37 H 0.10 2.54 6.55 -52.49 -0.34 2.20 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.11 1.44 8.02 -51.92 -0.42 1.02 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -31.43 347.53 -8.62 -40.05 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.03 Total: 11.20 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -3.10 Total: -19.87 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.56 Total: -32.87 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.25 Total: -17.61 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.43 -8.62 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281526569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds