Wall clock time and date at job start Tue Mar 31 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42891 * 109.47254 * 2 1 4 4 C 1.42899 * 114.00150 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47296 * 180.02562 * 4 3 2 6 6 C 1.50694 * 115.55068 * 294.87292 * 5 4 3 7 7 O 1.21288 * 119.99837 * 247.06958 * 6 5 4 8 8 N 1.34778 * 120.00111 * 67.06736 * 6 5 4 9 9 C 1.39238 * 119.99637 * 185.42305 * 8 6 5 10 10 C 1.39486 * 119.83264 * 215.63591 * 9 8 6 11 11 C 1.36373 * 120.16765 * 180.26126 * 10 9 8 12 12 C 1.40873 * 119.83017 * 359.51638 * 11 10 9 13 13 C 1.41145 * 120.16536 * 180.27577 * 12 11 10 14 14 H 1.08002 * 120.00290 * 338.24418 * 13 12 11 15 15 C 1.39903 * 120.00380 * 158.23696 * 13 12 11 16 16 N 1.30874 * 119.99527 * 339.76878 * 15 13 12 17 17 Si 1.86796 * 120.00157 * 159.76364 * 15 13 12 18 18 H 1.48500 * 109.47108 * 94.99489 * 17 15 13 19 19 H 1.48507 * 109.46997 * 214.99114 * 17 15 13 20 20 H 1.48494 * 109.47351 * 334.98741 * 17 15 13 21 21 C 1.40869 * 119.66786 * 0.25908 * 12 11 10 22 22 C 1.36372 * 119.83298 * 359.97438 * 21 12 11 23 23 C 1.53006 * 117.49703 * 80.54412 * 5 4 3 24 24 C 1.53000 * 117.49698 * 149.19881 * 5 4 3 25 25 H 1.09007 * 109.46657 * 300.00141 * 1 2 3 26 26 H 1.09001 * 109.47144 * 59.99329 * 1 2 3 27 27 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46683 * 239.99773 * 2 1 3 29 29 H 1.09001 * 109.47144 * 120.00671 * 2 1 3 30 30 H 1.08999 * 109.46986 * 60.00017 * 4 3 2 31 31 H 1.09003 * 109.47132 * 300.00101 * 4 3 2 32 32 H 0.96997 * 119.99785 * 5.42543 * 8 6 5 33 33 H 1.08001 * 119.91439 * 0.05580 * 10 9 8 34 34 H 1.07996 * 120.08339 * 179.80218 * 11 10 9 35 35 H 0.96999 * 119.99929 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.08359 * 180.02562 * 21 12 11 37 37 H 1.07996 * 119.91481 * 180.02562 * 22 21 12 38 38 H 1.08998 * 117.49439 * 215.00474 * 23 5 4 39 39 H 1.08992 * 117.49782 * 0.02562 * 23 5 4 40 40 H 1.08996 * 117.50271 * 359.97438 * 24 5 4 41 41 H 1.09011 * 117.49849 * 144.97241 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 3.4400 3.7145 -1.2327 7 8 4.2997 4.1382 -1.9760 8 7 2.1400 3.9377 -1.5094 9 6 1.7786 4.5553 -2.7039 10 6 0.6921 5.4296 -2.7320 11 6 0.3289 6.0340 -3.8993 12 6 1.0604 5.7814 -5.0764 13 6 0.6943 6.4077 -6.2872 14 1 -0.3088 6.7860 -6.4177 15 6 1.6308 6.5386 -7.3182 16 7 2.9102 6.4587 -7.0541 17 14 1.0553 6.8271 -9.0717 18 1 1.0606 8.2837 -9.3611 19 1 1.9693 6.1321 -10.0134 20 1 -0.3214 6.2950 -9.2348 21 6 2.1594 4.9008 -5.0390 22 6 2.5077 4.3001 -3.8653 23 6 3.7928 3.6775 1.3393 24 6 5.1343 3.3198 0.6947 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8333 0.9766 -0.8908 31 1 3.8341 0.9763 0.8892 32 1 1.4562 3.6682 -0.8764 33 1 0.1351 5.6257 -1.8278 34 1 -0.5145 6.7082 -3.9202 35 1 3.5595 6.5491 -7.7690 36 1 2.7251 4.7026 -5.9373 37 1 3.3502 3.6251 -3.8350 38 1 3.4925 4.7253 1.3286 39 1 3.4907 3.1106 2.2198 40 1 5.7140 2.5177 1.1515 41 1 5.7168 4.1320 0.2596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281526569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:59 Heat of formation + Delta-G solvation = -59.692783 kcal Electronic energy + Delta-G solvation = -22650.921774 eV Core-core repulsion = 19302.488818 eV Total energy + Delta-G solvation = -3348.432955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47634 -39.60181 -38.74769 -37.27294 -36.16298 -34.68890 -32.18307 -31.46546 -30.90317 -28.18586 -26.99525 -24.48512 -23.70832 -23.29636 -23.18533 -22.19467 -20.39589 -19.27907 -18.48710 -17.82356 -17.44276 -17.15172 -16.82946 -16.45026 -15.91087 -15.74684 -15.36268 -14.75908 -14.69481 -14.35081 -14.19368 -13.94875 -13.74710 -13.41018 -13.34041 -13.05778 -12.79845 -12.73357 -12.47585 -12.35703 -12.31465 -12.14729 -11.80693 -11.66268 -11.52408 -11.30304 -11.17626 -10.81470 -10.52997 -10.38113 -9.48608 -8.91871 -8.64902 -6.27138 0.78293 1.11762 1.36781 1.41835 1.54001 1.75998 2.19461 2.24366 2.51173 2.74331 2.95478 3.66963 3.70331 3.77359 3.86997 4.00486 4.21698 4.32820 4.40499 4.41326 4.45817 4.53971 4.61415 4.70930 4.80825 4.90491 4.94592 4.96123 5.08092 5.08695 5.18270 5.19618 5.28891 5.31925 5.44472 5.64769 5.86375 6.06531 6.10122 6.25145 6.31136 6.64597 6.76556 6.89981 6.99170 7.43844 8.29431 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003789 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.628541 B = 7388.561932 C = 7987.080496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.403 6.403 4 C 0.113 3.887 5 C -0.176 4.176 6 C 0.531 3.469 7 O -0.584 6.584 8 N -0.630 5.630 9 C 0.001 3.999 10 C -0.098 4.098 11 C -0.226 4.226 12 C 0.075 3.925 13 C -0.492 4.492 14 H 0.084 0.916 15 C 0.032 3.968 16 N -0.823 5.823 17 Si 0.986 3.014 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.254 1.254 21 C -0.186 4.186 22 C -0.096 4.096 23 C -0.130 4.130 24 C -0.131 4.131 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.415 0.585 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.288 0.712 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 -11.696 15.984 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.323 6.323 4 C 0.037 3.963 5 C -0.180 4.180 6 C 0.319 3.681 7 O -0.464 6.464 8 N -0.273 5.273 9 C -0.093 4.093 10 C -0.118 4.118 11 C -0.246 4.246 12 C 0.072 3.928 13 C -0.521 4.521 14 H 0.102 0.898 15 C -0.184 4.184 16 N -0.449 5.449 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.177 1.177 21 C -0.206 4.206 22 C -0.116 4.116 23 C -0.167 4.167 24 C -0.169 4.169 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.253 0.747 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.476 -11.250 15.386 19.066 hybrid contribution 0.013 0.017 -1.020 1.021 sum -0.463 -11.233 14.366 18.242 Atomic orbital electron populations 1.21763 0.93210 1.03229 1.02571 1.22621 0.96098 0.82700 1.00829 1.87842 1.20782 1.28126 1.95562 1.21812 0.81808 0.90926 1.01771 1.21343 1.07650 0.96092 0.92869 1.20267 0.82047 0.79257 0.86487 1.90692 1.50761 1.52815 1.52121 1.42868 1.07759 1.57789 1.18886 1.17301 1.01698 1.04506 0.85749 1.20395 0.97314 0.95951 0.98096 1.20790 1.04869 1.06371 0.92574 1.17988 0.91273 0.90172 0.93363 1.19855 0.98945 1.34599 0.98722 0.89790 1.26918 0.93981 0.91726 1.05733 1.69960 1.03172 1.35318 1.36446 0.85144 0.79637 0.79383 0.75241 1.18462 1.19278 1.17732 1.20907 1.01826 1.01041 0.96815 1.20373 0.98523 1.00082 0.92653 1.23184 0.99285 1.00902 0.93314 1.23126 0.89731 1.03969 1.00041 0.91440 0.93530 0.89264 0.93940 0.91074 0.93997 0.88572 0.74741 0.85253 0.87036 0.90113 0.88222 0.89742 0.89064 0.84429 0.84392 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.28 71.98 0.74 -1.65 16 2 C 0.05 0.92 6.66 71.98 0.48 1.40 16 3 O -0.40 -9.11 9.42 -148.98 -1.40 -10.51 16 4 C 0.11 2.40 5.76 71.98 0.41 2.81 16 5 C -0.18 -4.56 2.16 -52.93 -0.11 -4.68 16 6 C 0.53 20.60 6.74 87.66 0.59 21.19 16 7 O -0.58 -28.75 14.54 -3.05 -0.04 -28.79 16 8 N -0.63 -24.40 5.14 -303.10 -1.56 -25.96 16 9 C 0.00 0.04 6.25 38.57 0.24 0.28 16 10 C -0.10 -4.44 9.90 22.14 0.22 -4.22 16 11 C -0.23 -11.40 9.74 22.48 0.22 -11.19 16 12 C 0.07 4.26 5.60 -21.28 -0.12 4.14 16 13 C -0.49 -27.41 9.03 23.39 0.21 -27.20 16 14 H 0.08 4.40 7.92 -2.91 -0.02 4.38 16 15 C 0.03 1.66 5.11 85.24 0.44 2.10 16 16 N -0.82 -45.94 10.91 21.82 0.24 -45.70 16 17 Si 0.99 39.27 29.60 68.60 2.03 41.30 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 21 C -0.19 -10.87 8.67 22.48 0.19 -10.67 16 22 C -0.10 -5.26 8.57 22.13 0.19 -5.07 16 23 C -0.13 -2.46 9.96 30.62 0.30 -2.15 16 24 C -0.13 -2.74 9.75 30.62 0.30 -2.44 16 25 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 32 H 0.42 13.43 8.11 -92.71 -0.75 12.68 16 33 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 34 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 35 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 36 H 0.10 6.11 6.03 -2.91 -0.02 6.10 16 37 H 0.08 4.73 6.55 -2.91 -0.02 4.71 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.14 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 2.22 8.02 -2.38 -0.02 2.20 16 Total: -1.00 -72.78 347.53 3.85 -68.93 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.28 Total: 38.10 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.31 Total: -37.37 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.32 Total: -71.66 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.45 Total: -39.30 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -72.78 3.85 -68.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281526569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.237 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds