Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00129 * 2 1 4 4 O 1.21545 * 120.00484 * 184.99712 * 3 2 1 5 5 C 1.47887 * 119.99796 * 4.99348 * 3 2 1 6 6 C 1.39919 * 120.02487 * 140.88996 * 5 3 2 7 7 C 1.38331 * 120.35632 * 180.02562 * 6 5 3 8 8 C 1.37750 * 120.41420 * 0.02562 * 7 6 5 9 9 C 1.40745 * 120.03855 * 359.97438 * 8 7 6 10 10 C 1.41444 * 120.17465 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99710 * 153.33368 * 10 9 8 12 12 C 1.39939 * 120.00079 * 333.33271 * 10 9 8 13 13 N 1.30825 * 119.99837 * 348.33287 * 12 10 9 14 14 Si 1.86796 * 119.99925 * 168.33134 * 12 10 9 15 15 H 1.48504 * 109.46984 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47286 * 119.99721 * 14 12 10 17 17 H 1.48497 * 109.47086 * 240.00491 * 14 12 10 18 18 C 1.38998 * 120.02714 * 320.91280 * 5 3 2 19 19 C 1.46497 * 120.00531 * 180.02562 * 2 1 3 20 20 H 1.08990 * 110.02273 * 178.60385 * 19 2 1 21 21 C 1.54266 * 110.03274 * 57.15768 * 19 2 1 22 22 C 1.54887 * 104.20260 * 217.11281 * 21 19 2 23 23 C 1.54891 * 102.74659 * 37.94145 * 22 21 19 24 24 C 1.53883 * 110.02812 * 299.99790 * 19 2 1 25 25 H 1.08994 * 110.03313 * 359.95040 * 24 19 2 26 26 O 1.42898 * 110.03080 * 238.56212 * 24 19 2 27 27 H 1.08997 * 109.47103 * 84.35272 * 1 2 3 28 28 H 1.08999 * 109.46963 * 204.35762 * 1 2 3 29 29 H 1.09003 * 109.46731 * 324.35307 * 1 2 3 30 30 H 1.08003 * 119.82129 * 359.74010 * 6 5 3 31 31 H 1.08002 * 119.78717 * 179.97438 * 7 6 5 32 32 H 1.07997 * 119.97696 * 179.97438 * 8 7 6 33 33 H 0.97000 * 119.99683 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.19866 * 359.95179 * 18 5 3 35 35 H 1.09007 * 110.48717 * 335.79323 * 21 19 2 36 36 H 1.09007 * 110.48636 * 98.42952 * 21 19 2 37 37 H 1.08998 * 110.75159 * 279.63434 * 22 21 19 38 38 H 1.08996 * 110.91864 * 156.33183 * 22 21 19 39 39 H 1.09001 * 110.48324 * 203.38475 * 23 22 21 40 40 H 1.09000 * 110.59944 * 80.79469 * 23 22 21 41 41 H 0.96697 * 113.99909 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3509 1.1693 -0.0917 5 6 1.4037 2.4455 0.1115 6 6 1.9257 3.4883 0.8846 7 6 1.2435 4.6867 0.9941 8 6 0.0426 4.8674 0.3440 9 6 -0.4982 3.8298 -0.4382 10 6 -1.7309 4.0124 -1.1074 11 1 -1.9452 3.4535 -2.0063 12 6 -2.6727 4.9171 -0.6046 13 7 -2.5207 5.4217 0.5928 14 14 -4.1469 5.4042 -1.6432 15 1 -4.0877 4.6984 -2.9485 16 1 -5.3971 5.0296 -0.9348 17 1 -4.1281 6.8713 -1.8720 18 6 0.1933 2.6118 -0.5513 19 6 2.1976 -1.2686 -0.0006 20 1 3.2708 -1.0798 -0.0254 21 6 1.7812 -2.1188 -1.2186 22 6 1.7747 -3.5722 -0.6833 23 6 1.2112 -3.4059 0.7499 24 6 1.8352 -2.0871 1.2512 25 1 1.1150 -1.5399 1.8594 26 8 3.0118 -2.3612 2.0143 27 1 -0.3633 0.1011 -1.0226 28 1 -0.3633 -0.9362 0.4238 29 1 -0.3633 0.8351 0.5989 30 1 2.8641 3.3553 1.4025 31 1 1.6547 5.4854 1.5937 32 1 -0.4843 5.8057 0.4347 33 1 -3.1733 6.0491 0.9411 34 1 -0.2132 1.8097 -1.1496 35 1 0.7862 -1.8337 -1.5606 36 1 2.5076 -2.0123 -2.0244 37 1 2.7858 -3.9783 -0.6561 38 1 1.1217 -4.2052 -1.2840 39 1 1.5217 -4.2388 1.3808 40 1 0.1241 -3.3296 0.7282 41 1 2.8490 -2.8746 2.8174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286351762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -66.253354 kcal Electronic energy + Delta-G solvation = -23145.045990 eV Core-core repulsion = 19796.328547 eV Total energy + Delta-G solvation = -3348.717443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11348 -38.39304 -36.97043 -35.43908 -34.05748 -33.63827 -30.15731 -29.88966 -28.13469 -27.51736 -26.30263 -25.31127 -22.51953 -21.06398 -20.87277 -20.11091 -18.94209 -17.59591 -17.06201 -16.22184 -15.96872 -15.50301 -15.44133 -14.87231 -14.77405 -14.32592 -13.54135 -13.35688 -13.08540 -12.76339 -12.71574 -12.64173 -12.30455 -12.20737 -11.84954 -11.73425 -11.58898 -11.25944 -11.23150 -11.01314 -10.76283 -10.69909 -10.66860 -10.49055 -10.25378 -9.98688 -9.51923 -9.30773 -9.04522 -8.32954 -7.60968 -7.49371 -6.79375 -4.47759 2.29757 2.70643 3.03427 3.08149 3.10203 3.26246 3.66068 3.88226 4.13360 4.47214 4.58138 4.61374 4.85058 5.17326 5.29950 5.35682 5.38210 5.46784 5.54015 5.54928 5.61623 5.68652 5.80981 5.83181 5.95654 6.09642 6.16783 6.20992 6.29525 6.39089 6.75827 6.87513 6.91254 7.02923 7.16891 7.34974 7.59182 7.62353 7.78736 7.89751 7.94885 8.09810 8.50161 8.74722 8.78831 8.82157 10.14005 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.004227 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.323973 B = 6622.298217 C = 7397.616962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.569 3.431 4 O -0.550 6.550 5 C -0.115 4.115 6 C -0.177 4.177 7 C -0.116 4.116 8 C -0.136 4.136 9 C 0.099 3.901 10 C -0.462 4.462 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.802 5.802 14 Si 0.910 3.090 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.273 1.273 18 C -0.193 4.193 19 C 0.142 3.858 20 H 0.112 0.888 21 C -0.132 4.132 22 C -0.119 4.119 23 C -0.155 4.155 24 C 0.087 3.913 25 H 0.064 0.936 26 O -0.560 6.560 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.280 0.720 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -13.262 0.684 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C 0.361 3.639 4 O -0.429 6.429 5 C -0.118 4.118 6 C -0.198 4.198 7 C -0.134 4.134 8 C -0.156 4.156 9 C 0.096 3.904 10 C -0.492 4.492 11 H 0.096 0.904 12 C -0.143 4.143 13 N -0.428 5.428 14 Si 0.735 3.265 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.198 1.198 18 C -0.213 4.213 19 C 0.038 3.962 20 H 0.130 0.870 21 C -0.170 4.170 22 C -0.156 4.156 23 C -0.193 4.193 24 C 0.027 3.973 25 H 0.082 0.918 26 O -0.365 6.365 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.448 -12.753 0.317 12.839 hybrid contribution -1.163 -0.068 0.150 1.175 sum 0.285 -12.822 0.467 12.834 Atomic orbital electron populations 1.22140 0.79264 1.03008 1.02326 1.47776 1.07012 1.04958 1.74663 1.19020 0.86842 0.83974 0.74059 1.90670 1.14423 1.87503 1.50255 1.19248 0.96481 0.92614 1.03449 1.20394 1.00333 0.94067 1.04972 1.20689 0.96155 0.96071 1.00499 1.21649 0.94166 0.99880 0.99862 1.17561 0.92165 0.89632 0.90996 1.19568 0.99312 1.20456 1.09849 0.90382 1.25876 0.99610 0.94276 0.94506 1.69775 1.34575 1.23978 1.14477 0.86225 0.80339 0.79145 0.80806 1.18472 1.20000 1.19769 1.21501 0.95893 0.98143 1.05778 1.21472 0.99506 0.83005 0.92220 0.86994 1.22718 1.02566 0.94339 0.97409 1.22406 1.01357 0.96437 0.95445 1.23075 1.00677 0.97707 0.97816 1.22856 0.86830 0.94590 0.92978 0.91779 1.86570 1.33046 1.77130 1.39758 0.92222 0.92242 0.88932 0.88587 0.88643 0.85571 0.90910 0.87443 0.90530 0.90808 0.91089 0.91276 0.91015 0.90706 0.77852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 7.31 59.85 0.44 1.57 16 2 N -0.61 -10.58 2.75 -173.75 -0.48 -11.06 16 3 C 0.57 12.30 7.35 -12.31 -0.09 12.21 16 4 O -0.55 -13.34 16.26 5.33 0.09 -13.25 16 5 C -0.12 -2.64 5.24 -105.04 -0.55 -3.19 16 6 C -0.18 -4.14 9.63 -38.92 -0.37 -4.51 16 7 C -0.12 -2.68 10.01 -39.73 -0.40 -3.08 16 8 C -0.14 -3.40 8.67 -38.81 -0.34 -3.73 16 9 C 0.10 2.48 5.57 -106.87 -0.60 1.89 16 10 C -0.46 -11.49 9.07 -37.73 -0.34 -11.83 16 11 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 12 C 0.07 1.76 5.25 -17.34 -0.09 1.66 16 13 N -0.80 -19.71 10.74 55.55 0.60 -19.11 16 14 Si 0.91 17.85 29.57 -169.99 -5.03 12.82 16 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 18 C -0.19 -4.43 7.32 -38.44 -0.28 -4.71 16 19 C 0.14 2.15 3.11 -66.81 -0.21 1.94 16 20 H 0.11 2.03 6.76 -51.93 -0.35 1.68 16 21 C -0.13 -1.59 6.42 -25.07 -0.16 -1.75 16 22 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 23 C -0.15 -1.45 6.56 -25.07 -0.16 -1.61 16 24 C 0.09 1.10 3.41 -25.61 -0.09 1.01 16 25 H 0.06 0.83 7.11 -51.93 -0.37 0.46 16 26 O -0.56 -7.23 13.21 -35.23 -0.47 -7.69 16 27 H 0.06 0.86 6.75 -51.93 -0.35 0.51 16 28 H 0.06 0.71 7.02 -51.93 -0.36 0.34 16 29 H 0.09 1.60 5.90 -51.93 -0.31 1.29 16 30 H 0.10 2.16 8.05 -52.48 -0.42 1.74 16 31 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.13 3.24 6.07 -52.49 -0.32 2.92 16 33 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 34 H 0.11 2.24 5.24 -52.48 -0.28 1.96 16 35 H 0.08 0.89 6.98 -51.92 -0.36 0.53 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.37 2.99 9.11 45.56 0.41 3.40 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -29.72 329.53 -8.52 -38.24 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.79 Total: 10.53 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -3.41 Total: -15.44 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.12 Total: -30.17 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.38 Total: -20.94 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.72 -8.52 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286351762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.009 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds