Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 120.00129 * 2 1 4 4 O 1.21545 * 120.00484 * 184.99712 * 3 2 1 5 5 C 1.47887 * 119.99796 * 4.99348 * 3 2 1 6 6 C 1.39919 * 120.02487 * 140.88996 * 5 3 2 7 7 C 1.38331 * 120.35632 * 180.02562 * 6 5 3 8 8 C 1.37750 * 120.41420 * 0.02562 * 7 6 5 9 9 C 1.40745 * 120.03855 * 359.97438 * 8 7 6 10 10 C 1.41444 * 120.17465 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99710 * 153.33368 * 10 9 8 12 12 C 1.39939 * 120.00079 * 333.33271 * 10 9 8 13 13 N 1.30825 * 119.99837 * 348.33287 * 12 10 9 14 14 Si 1.86796 * 119.99925 * 168.33134 * 12 10 9 15 15 H 1.48504 * 109.46984 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47286 * 119.99721 * 14 12 10 17 17 H 1.48497 * 109.47086 * 240.00491 * 14 12 10 18 18 C 1.38998 * 120.02714 * 320.91280 * 5 3 2 19 19 C 1.46497 * 120.00531 * 180.02562 * 2 1 3 20 20 H 1.08990 * 110.02273 * 178.60385 * 19 2 1 21 21 C 1.54266 * 110.03274 * 57.15768 * 19 2 1 22 22 C 1.54887 * 104.20260 * 217.11281 * 21 19 2 23 23 C 1.54891 * 102.74659 * 37.94145 * 22 21 19 24 24 C 1.53883 * 110.02812 * 299.99790 * 19 2 1 25 25 H 1.08994 * 110.03313 * 359.95040 * 24 19 2 26 26 O 1.42898 * 110.03080 * 238.56212 * 24 19 2 27 27 H 1.08997 * 109.47103 * 84.35272 * 1 2 3 28 28 H 1.08999 * 109.46963 * 204.35762 * 1 2 3 29 29 H 1.09003 * 109.46731 * 324.35307 * 1 2 3 30 30 H 1.08003 * 119.82129 * 359.74010 * 6 5 3 31 31 H 1.08002 * 119.78717 * 179.97438 * 7 6 5 32 32 H 1.07997 * 119.97696 * 179.97438 * 8 7 6 33 33 H 0.97000 * 119.99683 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.19866 * 359.95179 * 18 5 3 35 35 H 1.09007 * 110.48717 * 335.79323 * 21 19 2 36 36 H 1.09007 * 110.48636 * 98.42952 * 21 19 2 37 37 H 1.08998 * 110.75159 * 279.63434 * 22 21 19 38 38 H 1.08996 * 110.91864 * 156.33183 * 22 21 19 39 39 H 1.09001 * 110.48324 * 203.38475 * 23 22 21 40 40 H 1.09000 * 110.59944 * 80.79469 * 23 22 21 41 41 H 0.96697 * 113.99909 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3509 1.1693 -0.0917 5 6 1.4037 2.4455 0.1115 6 6 1.9257 3.4883 0.8846 7 6 1.2435 4.6867 0.9941 8 6 0.0426 4.8674 0.3440 9 6 -0.4982 3.8298 -0.4382 10 6 -1.7309 4.0124 -1.1074 11 1 -1.9452 3.4535 -2.0063 12 6 -2.6727 4.9171 -0.6046 13 7 -2.5207 5.4217 0.5928 14 14 -4.1469 5.4042 -1.6432 15 1 -4.0877 4.6984 -2.9485 16 1 -5.3971 5.0296 -0.9348 17 1 -4.1281 6.8713 -1.8720 18 6 0.1933 2.6118 -0.5513 19 6 2.1976 -1.2686 -0.0006 20 1 3.2708 -1.0798 -0.0254 21 6 1.7812 -2.1188 -1.2186 22 6 1.7747 -3.5722 -0.6833 23 6 1.2112 -3.4059 0.7499 24 6 1.8352 -2.0871 1.2512 25 1 1.1150 -1.5399 1.8594 26 8 3.0118 -2.3612 2.0143 27 1 -0.3633 0.1011 -1.0226 28 1 -0.3633 -0.9362 0.4238 29 1 -0.3633 0.8351 0.5989 30 1 2.8641 3.3553 1.4025 31 1 1.6547 5.4854 1.5937 32 1 -0.4843 5.8057 0.4347 33 1 -3.1733 6.0491 0.9411 34 1 -0.2132 1.8097 -1.1496 35 1 0.7862 -1.8337 -1.5606 36 1 2.5076 -2.0123 -2.0244 37 1 2.7858 -3.9783 -0.6561 38 1 1.1217 -4.2052 -1.2840 39 1 1.5217 -4.2388 1.3808 40 1 0.1241 -3.3296 0.7282 41 1 2.8490 -2.8746 2.8174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286351762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -84.940957 kcal Electronic energy + Delta-G solvation = -23145.856346 eV Core-core repulsion = 19796.328547 eV Total energy + Delta-G solvation = -3349.527798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53617 -39.72458 -38.70294 -36.67609 -35.56131 -35.13292 -31.88522 -31.67726 -29.21031 -28.58220 -27.67951 -27.14918 -24.14100 -22.68471 -21.88507 -21.59557 -20.31873 -19.14386 -18.41601 -17.53990 -17.43568 -17.10783 -16.56312 -16.51797 -16.19556 -15.81805 -14.98372 -14.94179 -14.54840 -14.34652 -13.94639 -13.79367 -13.60139 -13.48020 -13.28830 -13.24748 -12.83957 -12.77165 -12.64864 -12.44152 -12.23698 -12.07068 -11.98427 -11.73618 -11.53957 -11.34106 -11.09028 -10.90670 -10.76744 -9.75128 -9.45530 -9.36201 -8.58998 -6.37511 0.47939 0.92284 1.43801 1.49664 1.57810 1.79730 2.01107 2.24235 2.75968 3.19493 3.55733 3.65521 3.68059 3.79093 3.98626 4.19575 4.28998 4.35903 4.42316 4.45990 4.53145 4.54385 4.64635 4.72866 4.88271 4.95874 4.99008 5.01287 5.04761 5.12025 5.16655 5.17989 5.33253 5.37778 5.46122 5.62425 5.80002 5.99415 6.03267 6.20608 6.30548 6.62280 6.86687 6.91465 6.93955 7.11272 8.36622 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.004227 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.323973 B = 6622.298217 C = 7397.616962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.562 3.438 4 O -0.587 6.587 5 C -0.120 4.120 6 C -0.194 4.194 7 C -0.113 4.113 8 C -0.160 4.160 9 C 0.074 3.926 10 C -0.487 4.487 11 H 0.083 0.917 12 C 0.036 3.964 13 N -0.829 5.829 14 Si 0.983 3.017 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.270 1.270 18 C -0.187 4.187 19 C 0.131 3.869 20 H 0.074 0.926 21 C -0.129 4.129 22 C -0.112 4.112 23 C -0.143 4.143 24 C 0.088 3.912 25 H 0.059 0.941 26 O -0.583 6.583 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.288 0.712 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -15.344 0.189 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.330 5.330 3 C 0.354 3.646 4 O -0.469 6.469 5 C -0.123 4.123 6 C -0.214 4.214 7 C -0.131 4.131 8 C -0.180 4.180 9 C 0.072 3.928 10 C -0.517 4.517 11 H 0.101 0.899 12 C -0.179 4.179 13 N -0.456 5.456 14 Si 0.804 3.196 15 H -0.180 1.180 16 H -0.191 1.191 17 H -0.195 1.195 18 C -0.207 4.207 19 C 0.028 3.972 20 H 0.092 0.908 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.181 4.181 24 C 0.029 3.971 25 H 0.077 0.923 26 O -0.392 6.392 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.443 -14.886 -0.156 14.894 hybrid contribution -0.526 0.540 0.366 0.838 sum -0.969 -14.346 0.210 14.380 Atomic orbital electron populations 1.22236 0.77562 1.04161 1.02859 1.47803 1.08037 1.04622 1.72567 1.18905 0.86400 0.84884 0.74445 1.90643 1.15746 1.88102 1.52420 1.19496 0.96496 0.93409 1.02878 1.20564 1.00688 0.94524 1.05654 1.20879 0.95533 0.96631 1.00087 1.21625 0.95087 0.99735 1.01573 1.17914 0.92929 0.90411 0.91541 1.19831 0.99777 1.21765 1.10326 0.89932 1.26703 1.02192 0.93596 0.95367 1.69834 1.35779 1.24167 1.15779 0.85133 0.76711 0.78666 0.79080 1.18016 1.19128 1.19462 1.21653 0.95585 0.97996 1.05460 1.21749 0.97275 0.82576 0.95624 0.90774 1.22715 1.02642 0.95544 0.95796 1.22406 1.01980 0.94710 0.95850 1.23038 1.01374 0.96136 0.97551 1.22802 0.86612 0.96041 0.91687 0.92259 1.86524 1.33653 1.77868 1.41125 0.91153 0.88352 0.91268 0.88337 0.86502 0.86791 0.90152 0.85567 0.89597 0.91528 0.91365 0.88768 0.88957 0.88937 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.08 7.31 127.77 0.93 3.02 16 2 N -0.60 -20.55 2.75 -821.90 -2.26 -22.81 16 3 C 0.56 24.84 7.35 86.80 0.64 25.48 16 4 O -0.59 -29.53 16.26 -3.86 -0.06 -29.59 16 5 C -0.12 -5.61 5.24 -20.13 -0.11 -5.71 16 6 C -0.19 -9.29 9.63 22.70 0.22 -9.07 16 7 C -0.11 -5.35 10.01 22.18 0.22 -5.13 16 8 C -0.16 -8.23 8.67 22.77 0.20 -8.04 16 9 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 10 C -0.49 -24.35 9.07 23.47 0.21 -24.14 16 11 H 0.08 3.91 7.87 -2.91 -0.02 3.89 16 12 C 0.04 1.68 5.25 85.25 0.45 2.13 16 13 N -0.83 -40.98 10.74 21.82 0.23 -40.75 16 14 Si 0.98 35.86 29.57 68.60 2.03 37.89 16 15 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 16 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 17 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 18 C -0.19 -8.67 7.32 23.01 0.17 -8.50 16 19 C 0.13 3.89 3.11 45.72 0.14 4.03 16 20 H 0.07 2.79 6.76 -2.39 -0.02 2.77 16 21 C -0.13 -2.85 6.42 31.67 0.20 -2.65 16 22 C -0.11 -1.77 6.91 31.89 0.22 -1.55 16 23 C -0.14 -2.12 6.56 31.67 0.21 -1.91 16 24 C 0.09 2.05 3.41 31.32 0.11 2.15 16 25 H 0.06 1.42 7.11 -2.39 -0.02 1.40 16 26 O -0.58 -14.38 13.21 -148.98 -1.97 -16.35 16 27 H 0.07 1.88 6.75 -2.39 -0.02 1.86 16 28 H 0.10 2.03 7.02 -2.39 -0.02 2.02 16 29 H 0.07 2.35 5.90 -2.39 -0.01 2.33 16 30 H 0.10 4.58 8.05 -2.91 -0.02 4.56 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 32 H 0.11 6.05 6.07 -2.91 -0.02 6.03 16 33 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 34 H 0.13 5.21 5.24 -2.91 -0.02 5.20 16 35 H 0.09 1.75 6.98 -2.38 -0.02 1.73 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.05 8.06 -2.39 -0.02 1.03 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.40 5.58 9.11 -74.06 -0.67 4.90 16 Total: -1.00 -66.34 329.53 2.05 -64.29 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.38 Total: 33.51 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.69 Total: -26.20 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -2.03 Total: -63.56 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.03 Total: -45.94 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -66.34 2.05 -64.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286351762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.647 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds