Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42908 * 109.47157 * 2 1 4 4 C 1.42901 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.53778 * 113.61291 * 112.50629 * 4 3 2 6 6 C 1.53768 * 87.08405 * 89.11454 * 5 4 3 7 7 C 1.50704 * 113.61744 * 139.97977 * 6 5 4 8 8 O 1.21277 * 120.00186 * 262.50027 * 7 6 5 9 9 N 1.34773 * 119.99716 * 82.50297 * 7 6 5 10 10 C 1.39235 * 120.00057 * 175.70945 * 9 7 6 11 11 C 1.39483 * 119.83770 * 215.01586 * 10 9 7 12 12 C 1.36373 * 120.16832 * 179.71739 * 11 10 9 13 13 C 1.40876 * 119.82966 * 0.57268 * 12 11 10 14 14 C 1.41143 * 120.16503 * 179.67581 * 13 12 11 15 15 H 1.08002 * 120.00463 * 214.80367 * 14 13 12 16 16 C 1.39914 * 120.00002 * 34.80229 * 14 13 12 17 17 N 1.30871 * 119.99612 * 355.56307 * 16 14 13 18 18 Si 1.86794 * 120.00081 * 175.55607 * 16 14 13 19 19 H 1.48497 * 109.47100 * 90.00204 * 18 16 14 20 20 H 1.48503 * 109.47239 * 210.00131 * 18 16 14 21 21 H 1.48505 * 109.47109 * 330.00349 * 18 16 14 22 22 C 1.40869 * 119.66965 * 359.70207 * 13 12 11 23 23 C 1.36376 * 119.83035 * 359.97438 * 22 13 12 24 24 C 1.53778 * 113.61303 * 210.00075 * 4 3 2 25 25 H 1.08998 * 109.46854 * 300.00104 * 1 2 3 26 26 H 1.09002 * 109.46557 * 59.99771 * 1 2 3 27 27 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47650 * 240.00309 * 2 1 3 29 29 H 1.09002 * 109.47431 * 119.99956 * 2 1 3 30 30 H 1.08999 * 112.90651 * 341.25042 * 4 3 2 31 31 H 1.09000 * 113.61108 * 203.66629 * 5 4 3 32 32 H 1.09002 * 113.61296 * 334.56220 * 5 4 3 33 33 H 1.09008 * 113.61414 * 270.88553 * 6 5 4 34 34 H 0.97001 * 120.00004 * 355.70762 * 9 7 6 35 35 H 1.08002 * 119.91167 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.08519 * 180.25341 * 12 11 10 37 37 H 0.97005 * 119.99792 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.08461 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.91290 * 180.02562 * 23 22 13 40 40 H 1.09004 * 113.61749 * 25.43571 * 24 4 3 41 41 H 1.08997 * 113.61514 * 156.33780 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0030 2.0462 -1.3010 6 6 3.8397 3.4325 -0.6560 7 6 4.9843 4.3702 -0.9423 8 8 5.8746 4.5059 -0.1300 9 7 5.0185 5.0578 -2.1008 10 6 6.0274 5.9902 -2.3276 11 6 5.7498 7.1517 -3.0483 12 6 6.7315 8.0721 -3.2693 13 6 8.0316 7.8418 -2.7781 14 6 9.0546 8.7864 -3.0087 15 1 10.0699 8.4548 -3.1688 16 6 8.7535 10.1526 -3.0298 17 7 7.5113 10.5506 -2.9227 18 14 10.1243 11.4085 -3.2108 19 1 10.3510 11.6897 -4.6512 20 1 9.7408 12.6636 -2.5159 21 1 11.3710 10.8707 -2.6093 22 6 8.3056 6.6636 -2.0560 23 6 7.3120 5.7555 -1.8372 24 6 3.9484 2.7253 0.7051 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9288 0.5459 0.3237 31 1 5.0411 1.7698 -1.4850 32 1 3.3621 1.8901 -2.1688 33 1 2.8648 3.8858 -0.8360 34 1 4.3402 4.9032 -2.7768 35 1 4.7539 7.3244 -3.4286 36 1 6.5141 8.9729 -3.8240 37 1 7.3025 11.4977 -2.9377 38 1 9.3000 6.4800 -1.6768 39 1 7.5205 4.8520 -1.2835 40 1 3.2635 3.1175 1.4570 41 1 4.9716 2.6346 1.0695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286758645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -43.773294 kcal Electronic energy + Delta-G solvation = -21937.866125 eV Core-core repulsion = 18590.123490 eV Total energy + Delta-G solvation = -3347.742635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39637 -38.83671 -37.26640 -35.88941 -34.35993 -32.85901 -31.19876 -29.56843 -28.98919 -26.43296 -25.82009 -24.44501 -23.13296 -21.72474 -20.95977 -20.09103 -19.21977 -17.52923 -17.22748 -16.45418 -16.20282 -15.88450 -15.50418 -15.13328 -14.59950 -14.07157 -13.90156 -13.56938 -13.21696 -12.98136 -12.78922 -12.64933 -12.44172 -12.09092 -11.83497 -11.73121 -11.66799 -11.48752 -11.31786 -11.12703 -10.96600 -10.78109 -10.67650 -10.50001 -9.97483 -9.70255 -9.46140 -9.37255 -9.01623 -8.81259 -7.52101 -6.83086 -6.59447 -4.31808 2.58350 3.03869 3.10244 3.11737 3.15581 3.30897 3.36004 3.81851 3.99984 4.36950 4.49547 4.65465 4.73003 4.77290 4.80370 4.96943 5.06089 5.12198 5.39572 5.41229 5.57575 5.62287 5.67081 5.69851 5.78614 5.89352 5.98897 6.14839 6.22766 6.47411 6.79959 6.96043 7.02607 7.09654 7.24372 7.32742 7.66425 7.78785 7.90831 8.08961 8.31077 8.34917 8.65245 8.81322 8.95118 9.03541 10.31632 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.053790 B = 0.002599 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.421708 B =10772.358327 C =10981.466807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.063 3.937 5 C -0.142 4.142 6 C -0.128 4.128 7 C 0.507 3.493 8 O -0.533 6.533 9 N -0.651 5.651 10 C 0.005 3.995 11 C -0.122 4.122 12 C -0.141 4.141 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.812 5.812 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.206 4.206 23 C -0.087 4.087 24 C -0.115 4.115 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -16.251 2.271 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.286 6.286 4 C 0.005 3.995 5 C -0.180 4.180 6 C -0.149 4.149 7 C 0.294 3.706 8 O -0.410 6.410 9 N -0.293 5.293 10 C -0.088 4.088 11 C -0.142 4.142 12 C -0.161 4.161 13 C 0.096 3.904 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.440 5.440 18 Si 0.741 3.259 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.226 4.226 23 C -0.106 4.106 24 C -0.153 4.153 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.229 0.771 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.973 -15.772 2.877 19.428 hybrid contribution 0.252 0.486 -0.381 0.667 sum -10.721 -15.285 2.496 18.836 Atomic orbital electron populations 1.21750 0.93749 1.02197 1.03225 1.22533 0.95544 0.83885 1.00084 1.87898 1.19846 1.26275 1.94575 1.23037 0.81389 0.98312 0.96757 1.23377 1.02115 0.94387 0.98077 1.22671 0.98533 0.94581 0.99125 1.20434 0.87374 0.81342 0.81454 1.90661 1.38560 1.64860 1.46892 1.43042 1.29149 1.39545 1.17581 1.17312 0.87956 0.92364 1.11125 1.20328 0.98255 0.93379 1.02254 1.21195 0.93425 0.98918 1.02588 1.17724 0.93182 0.91050 0.88432 1.19485 0.95713 0.90553 1.43447 0.90648 1.25884 0.96415 0.99696 0.92615 1.69766 1.18764 1.17255 1.38193 0.86195 0.81411 0.79356 0.78988 1.19556 1.20322 1.18745 1.20809 0.97984 0.98294 1.05479 1.20393 0.91300 0.99170 0.99782 1.23093 1.02730 0.93660 0.95804 0.91818 0.91797 0.91159 0.93330 0.93331 0.90522 0.88786 0.90190 0.86909 0.77119 0.89106 0.85045 0.91176 0.88632 0.87534 0.90251 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.43 6.50 37.16 0.24 0.67 16 3 O -0.37 -3.85 10.27 -35.23 -0.36 -4.21 16 4 C 0.06 0.64 4.37 -25.92 -0.11 0.52 16 5 C -0.14 -1.49 7.46 -25.93 -0.19 -1.69 16 6 C -0.13 -1.64 4.08 -90.96 -0.37 -2.01 16 7 C 0.51 8.94 7.19 -10.98 -0.08 8.86 16 8 O -0.53 -11.53 13.32 5.56 0.07 -11.46 16 9 N -0.65 -11.69 5.30 -9.74 -0.05 -11.74 16 10 C 0.00 0.11 6.31 -83.57 -0.53 -0.42 16 11 C -0.12 -2.84 9.90 -39.79 -0.39 -3.23 16 12 C -0.14 -3.69 8.61 -39.26 -0.34 -4.03 16 13 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 14 C -0.46 -12.47 9.02 -37.85 -0.34 -12.81 16 15 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.76 5.42 -17.33 -0.09 1.67 16 17 N -0.81 -21.43 10.60 55.55 0.59 -20.84 16 18 Si 0.92 19.25 29.56 -169.99 -5.03 14.22 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 23 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 24 C -0.12 -1.39 7.24 -25.92 -0.19 -1.57 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 31 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.40 5.66 8.82 -40.82 -0.36 5.30 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.13 3.54 6.13 -52.49 -0.32 3.21 16 37 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 38 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 39 H 0.11 2.55 6.22 -52.49 -0.33 2.23 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.11 1.39 7.43 -51.93 -0.39 1.01 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -30.87 342.62 -8.94 -39.81 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.00 Total: 9.74 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.33 Total: -20.68 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.54 Total: -32.58 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.29 Total: -15.67 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.87 -8.94 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286758645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.964 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds