Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42908 * 109.47157 * 2 1 4 4 C 1.42901 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.53778 * 113.61291 * 112.50629 * 4 3 2 6 6 C 1.53768 * 87.08405 * 89.11454 * 5 4 3 7 7 C 1.50704 * 113.61744 * 139.97977 * 6 5 4 8 8 O 1.21277 * 120.00186 * 262.50027 * 7 6 5 9 9 N 1.34773 * 119.99716 * 82.50297 * 7 6 5 10 10 C 1.39235 * 120.00057 * 175.70945 * 9 7 6 11 11 C 1.39483 * 119.83770 * 215.01586 * 10 9 7 12 12 C 1.36373 * 120.16832 * 179.71739 * 11 10 9 13 13 C 1.40876 * 119.82966 * 0.57268 * 12 11 10 14 14 C 1.41143 * 120.16503 * 179.67581 * 13 12 11 15 15 H 1.08002 * 120.00463 * 214.80367 * 14 13 12 16 16 C 1.39914 * 120.00002 * 34.80229 * 14 13 12 17 17 N 1.30871 * 119.99612 * 355.56307 * 16 14 13 18 18 Si 1.86794 * 120.00081 * 175.55607 * 16 14 13 19 19 H 1.48497 * 109.47100 * 90.00204 * 18 16 14 20 20 H 1.48503 * 109.47239 * 210.00131 * 18 16 14 21 21 H 1.48505 * 109.47109 * 330.00349 * 18 16 14 22 22 C 1.40869 * 119.66965 * 359.70207 * 13 12 11 23 23 C 1.36376 * 119.83035 * 359.97438 * 22 13 12 24 24 C 1.53778 * 113.61303 * 210.00075 * 4 3 2 25 25 H 1.08998 * 109.46854 * 300.00104 * 1 2 3 26 26 H 1.09002 * 109.46557 * 59.99771 * 1 2 3 27 27 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47650 * 240.00309 * 2 1 3 29 29 H 1.09002 * 109.47431 * 119.99956 * 2 1 3 30 30 H 1.08999 * 112.90651 * 341.25042 * 4 3 2 31 31 H 1.09000 * 113.61108 * 203.66629 * 5 4 3 32 32 H 1.09002 * 113.61296 * 334.56220 * 5 4 3 33 33 H 1.09008 * 113.61414 * 270.88553 * 6 5 4 34 34 H 0.97001 * 120.00004 * 355.70762 * 9 7 6 35 35 H 1.08002 * 119.91167 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.08519 * 180.25341 * 12 11 10 37 37 H 0.97005 * 119.99792 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.08461 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.91290 * 180.02562 * 23 22 13 40 40 H 1.09004 * 113.61749 * 25.43571 * 24 4 3 41 41 H 1.08997 * 113.61514 * 156.33780 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0030 2.0462 -1.3010 6 6 3.8397 3.4325 -0.6560 7 6 4.9843 4.3702 -0.9423 8 8 5.8746 4.5059 -0.1300 9 7 5.0185 5.0578 -2.1008 10 6 6.0274 5.9902 -2.3276 11 6 5.7498 7.1517 -3.0483 12 6 6.7315 8.0721 -3.2693 13 6 8.0316 7.8418 -2.7781 14 6 9.0546 8.7864 -3.0087 15 1 10.0699 8.4548 -3.1688 16 6 8.7535 10.1526 -3.0298 17 7 7.5113 10.5506 -2.9227 18 14 10.1243 11.4085 -3.2108 19 1 10.3510 11.6897 -4.6512 20 1 9.7408 12.6636 -2.5159 21 1 11.3710 10.8707 -2.6093 22 6 8.3056 6.6636 -2.0560 23 6 7.3120 5.7555 -1.8372 24 6 3.9484 2.7253 0.7051 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8935 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9288 0.5459 0.3237 31 1 5.0411 1.7698 -1.4850 32 1 3.3621 1.8901 -2.1688 33 1 2.8648 3.8858 -0.8360 34 1 4.3402 4.9032 -2.7768 35 1 4.7539 7.3244 -3.4286 36 1 6.5141 8.9729 -3.8240 37 1 7.3025 11.4977 -2.9377 38 1 9.3000 6.4800 -1.6768 39 1 7.5205 4.8520 -1.2835 40 1 3.2635 3.1175 1.4570 41 1 4.9716 2.6346 1.0695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286758645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = -61.809347 kcal Electronic energy + Delta-G solvation = -21938.648227 eV Core-core repulsion = 18590.123490 eV Total energy + Delta-G solvation = -3348.524737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64972 -40.09832 -38.88613 -36.85961 -36.09910 -34.68216 -31.80919 -31.49420 -30.84361 -27.84006 -26.71172 -26.06443 -23.68209 -23.44350 -22.70457 -21.56569 -20.37885 -19.28635 -18.68775 -17.94726 -17.25047 -17.02685 -16.56110 -16.49733 -16.02441 -15.64544 -15.30067 -14.84344 -14.58130 -14.35765 -14.00657 -13.88240 -13.58835 -13.46391 -13.37179 -13.24813 -12.86201 -12.78290 -12.64557 -12.47819 -12.39240 -12.19468 -11.77279 -11.58300 -11.40410 -11.38665 -11.19764 -10.73687 -10.53788 -10.35979 -9.47913 -8.73568 -8.50985 -6.33730 0.78526 1.12444 1.39014 1.44297 1.53244 1.77896 2.23497 2.38021 2.62345 2.80142 3.44974 3.59219 3.67273 3.72754 3.91066 4.24597 4.27733 4.30779 4.39058 4.43996 4.53760 4.55987 4.75364 4.79773 4.88630 4.92786 4.99033 5.06277 5.09966 5.11932 5.14634 5.25835 5.32621 5.34940 5.43944 5.68716 5.90486 6.02112 6.13359 6.33694 6.38116 6.66463 6.74409 6.95863 6.99318 7.40579 8.41758 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.053790 B = 0.002599 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.421708 B =10772.358327 C =10981.466807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.384 6.384 4 C 0.076 3.924 5 C -0.132 4.132 6 C -0.123 4.123 7 C 0.507 3.493 8 O -0.575 6.575 9 N -0.644 5.644 10 C 0.020 3.980 11 C -0.121 4.121 12 C -0.159 4.159 13 C 0.066 3.934 14 C -0.497 4.497 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.842 5.842 18 Si 0.990 3.010 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.263 1.263 22 C -0.221 4.221 23 C -0.098 4.098 24 C -0.121 4.121 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.417 0.583 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.285 0.715 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -17.461 2.015 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.303 6.303 4 C 0.018 3.982 5 C -0.170 4.170 6 C -0.144 4.144 7 C 0.296 3.704 8 O -0.455 6.455 9 N -0.289 5.289 10 C -0.074 4.074 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.063 3.937 14 C -0.528 4.528 15 H 0.091 0.909 16 C -0.186 4.186 17 N -0.470 5.470 18 Si 0.811 3.189 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.187 1.187 22 C -0.241 4.241 23 C -0.118 4.118 24 C -0.159 4.159 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.254 0.746 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.474 -17.022 2.603 21.263 hybrid contribution 0.577 0.721 -0.243 0.955 sum -11.897 -16.301 2.359 20.318 Atomic orbital electron populations 1.21773 0.93065 1.03324 1.02645 1.22759 0.96156 0.82759 1.01110 1.87878 1.19721 1.28145 1.94586 1.22886 0.81655 0.98084 0.95609 1.23363 1.02477 0.92154 0.99005 1.22765 0.96811 0.94446 1.00368 1.21336 0.87871 0.80838 0.80348 1.90647 1.40582 1.66103 1.48137 1.43012 1.28544 1.38613 1.18697 1.17384 0.88380 0.92707 1.08883 1.20577 0.99093 0.92703 1.01705 1.21186 0.93954 0.99419 1.03384 1.18047 0.94154 0.91864 0.89590 1.19715 0.95715 0.91817 1.45564 0.90907 1.26769 0.99028 1.01136 0.91660 1.69830 1.20522 1.18109 1.38513 0.85086 0.77895 0.76513 0.79452 1.18343 1.19414 1.18676 1.20942 0.98624 0.98615 1.05937 1.20516 0.92024 0.99062 1.00157 1.23105 1.02203 0.95090 0.95516 0.92475 0.92280 0.89225 0.92199 0.92387 0.88564 0.89019 0.88442 0.85299 0.74635 0.85843 0.86302 0.90478 0.88575 0.87379 0.90291 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.38 -6.97 10.27 -148.98 -1.53 -8.50 16 4 C 0.08 1.32 4.37 31.12 0.14 1.46 16 5 C -0.13 -2.40 7.46 31.12 0.23 -2.17 16 6 C -0.12 -2.89 4.08 -11.02 -0.04 -2.93 16 7 C 0.51 17.21 7.19 87.66 0.63 17.84 16 8 O -0.58 -24.85 13.32 -3.02 -0.04 -24.89 16 9 N -0.64 -22.02 5.30 -303.11 -1.61 -23.62 16 10 C 0.02 0.90 6.31 38.57 0.24 1.14 16 11 C -0.12 -5.55 9.90 22.13 0.22 -5.33 16 12 C -0.16 -8.50 8.61 22.48 0.19 -8.31 16 13 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 14 C -0.50 -27.83 9.02 23.39 0.21 -27.61 16 15 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 16 C 0.03 1.34 5.42 85.24 0.46 1.81 16 17 N -0.84 -45.20 10.60 21.82 0.23 -44.97 16 18 Si 0.99 39.75 29.56 68.60 2.03 41.78 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 22 C -0.22 -11.80 9.74 22.48 0.22 -11.58 16 23 C -0.10 -4.82 8.61 22.14 0.19 -4.63 16 24 C -0.12 -2.73 7.24 31.12 0.23 -2.51 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.33 7.87 -2.39 -0.02 1.31 16 31 H 0.09 1.75 8.09 -2.39 -0.02 1.74 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.42 10.75 8.82 -92.71 -0.82 9.93 16 35 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.12 6.58 6.13 -2.91 -0.02 6.57 16 37 H 0.28 13.87 8.30 -92.70 -0.77 13.10 16 38 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 39 H 0.11 5.27 6.22 -2.91 -0.02 5.25 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.09 2.38 7.43 -2.39 -0.02 2.36 16 Total: -1.00 -68.31 342.62 3.30 -65.00 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.22 Total: 34.23 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.01 Total: -39.03 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -1.38 Total: -68.59 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.57 Total: -33.39 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -68.31 3.30 -65.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286758645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds