Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47079 * 2 1 4 4 C 1.46499 * 120.00114 * 290.32213 * 3 2 1 5 5 C 1.50696 * 109.47197 * 270.00243 * 4 3 2 6 6 H 1.08006 * 120.00102 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00123 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00221 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47224 * 89.99305 * 9 7 5 11 11 H 1.48496 * 109.47122 * 209.99466 * 9 7 5 12 12 H 1.48507 * 109.47079 * 329.99400 * 9 7 5 13 13 C 1.34782 * 119.99649 * 110.32721 * 3 2 1 14 14 O 1.21588 * 119.99984 * 178.30377 * 13 3 2 15 15 C 1.47536 * 120.00073 * 358.29842 * 13 3 2 16 16 C 1.39713 * 120.19220 * 327.51894 * 15 13 3 17 17 C 1.37780 * 119.90907 * 179.97438 * 16 15 13 18 18 C 1.38546 * 120.30025 * 359.97438 * 17 16 15 19 19 C 1.38059 * 120.39132 * 0.02562 * 18 17 16 20 20 C 1.38713 * 120.08315 * 0.02562 * 19 18 17 21 21 O 1.35654 * 120.14966 * 179.97438 * 20 19 18 22 22 C 1.42899 * 116.99726 * 354.60029 * 21 20 19 23 23 C 1.53000 * 117.49722 * 224.96071 * 22 21 20 24 24 C 1.53001 * 117.49633 * 156.30615 * 22 21 20 25 25 H 1.09002 * 109.47046 * 59.99884 * 1 2 3 26 26 H 1.09005 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47469 * 300.00152 * 1 2 3 28 28 H 1.09004 * 109.47223 * 239.99881 * 2 1 3 29 29 H 1.09002 * 109.47046 * 120.00116 * 2 1 3 30 30 H 1.08995 * 109.47080 * 30.00313 * 4 3 2 31 31 H 1.09005 * 109.46868 * 150.00368 * 4 3 2 32 32 H 0.97000 * 119.99539 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.04148 * 359.97438 * 16 15 13 34 34 H 1.08002 * 119.84971 * 180.25479 * 17 16 15 35 35 H 1.08006 * 119.80673 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.95676 * 179.97438 * 19 18 17 37 37 H 1.08999 * 115.55416 * 10.64126 * 22 21 20 38 38 H 1.08999 * 117.49995 * 0.02562 * 23 22 21 39 39 H 1.09002 * 117.49594 * 145.02545 * 23 22 21 40 40 H 1.08999 * 117.50092 * 214.98475 * 24 22 21 41 41 H 1.09006 * 117.49754 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.8471 2.2187 -1.1897 5 6 3.0445 2.0617 -2.0911 6 1 3.8525 1.4042 -1.8061 7 6 3.1090 2.7583 -3.2793 8 7 2.1253 3.5594 -3.6261 9 14 4.5936 2.5643 -4.3963 10 1 4.3539 1.4508 -5.3492 11 1 4.8126 3.8239 -5.1517 12 1 5.7945 2.2639 -3.5759 13 6 2.6252 1.8814 1.0946 14 8 3.0580 3.0175 1.0840 15 6 2.7643 1.0502 2.3056 16 6 1.7856 0.1060 2.6260 17 6 1.9217 -0.6674 3.7581 18 6 3.0255 -0.5139 4.5811 19 6 4.0001 0.4153 4.2763 20 6 3.8788 1.2033 3.1411 21 8 4.8353 2.1171 2.8407 22 6 5.8810 2.3000 3.7973 23 6 6.2840 3.7363 4.1374 24 6 7.2114 2.8608 3.2909 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.9477 1.9119 -1.7236 31 1 1.7530 3.2622 -0.8890 32 1 2.1705 4.0491 -4.4621 33 1 0.9236 -0.0174 1.9870 34 1 1.1666 -1.3999 4.0026 35 1 3.1239 -1.1241 5.4668 36 1 4.8575 0.5295 4.9230 37 1 5.9183 1.5633 4.5998 38 1 5.7512 4.5416 3.6318 39 1 6.5867 3.9444 5.1636 40 1 8.1239 2.4934 3.7605 41 1 7.2891 3.0899 2.2280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287814647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = 12.109111 kcal Electronic energy + Delta-G solvation = -23295.035651 eV Core-core repulsion = 19949.716259 eV Total energy + Delta-G solvation = -3345.319392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48531 -38.83625 -37.42560 -35.58728 -34.92765 -32.84789 -31.17007 -30.13692 -29.61519 -27.11173 -24.05700 -23.76185 -22.94031 -22.48317 -21.79484 -21.00983 -19.28243 -17.92483 -16.75151 -16.32560 -16.14966 -15.53963 -15.14291 -14.99954 -14.58330 -14.35315 -14.23748 -13.91714 -13.67117 -13.17082 -12.97422 -12.39363 -12.15540 -12.00055 -11.94201 -11.69811 -11.58099 -11.47108 -11.13422 -11.00339 -10.81991 -10.60354 -10.50624 -10.48563 -10.08553 -10.02032 -9.55304 -8.96096 -8.66653 -8.36944 -8.05820 -7.54362 -5.97894 -4.01484 1.10785 1.43337 3.09010 3.34068 3.39103 3.40771 3.46320 3.73272 3.91547 4.20440 4.47945 4.51314 4.76772 4.84462 4.90828 4.93383 5.05331 5.16922 5.32254 5.36121 5.39447 5.53642 5.54764 5.64057 5.67053 5.82264 5.88114 5.89637 6.06997 6.10488 6.26380 6.31802 6.34214 6.44641 6.58529 6.76860 7.15979 7.50600 7.56117 7.64591 7.99516 8.31603 8.51373 8.98385 9.21068 9.63074 11.10238 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.005848 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.823636 B = 4786.529253 C = 6391.587036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.082 3.918 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.549 3.451 14 O -0.522 6.522 15 C -0.156 4.156 16 C -0.067 4.067 17 C -0.173 4.173 18 C -0.065 4.065 19 C -0.224 4.224 20 C 0.181 3.819 21 O -0.250 6.250 22 C -0.007 4.007 23 C -0.181 4.181 24 C -0.170 4.170 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -9.428 17.403 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.041 4.041 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.336 3.664 14 O -0.399 6.399 15 C -0.160 4.160 16 C -0.085 4.085 17 C -0.191 4.191 18 C -0.083 4.083 19 C -0.243 4.243 20 C 0.134 3.866 21 O -0.161 6.161 22 C -0.063 4.063 23 C -0.218 4.218 24 C -0.207 4.207 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.256 -8.534 17.027 19.179 hybrid contribution 0.867 -0.246 -0.575 1.069 sum 3.123 -8.780 16.452 18.908 Atomic orbital electron populations 1.22235 0.96516 1.01589 1.02790 1.22025 0.93940 0.84852 1.03313 1.48110 1.56642 1.12750 1.14832 1.19252 0.96803 0.90819 0.80247 1.21447 1.04676 1.26315 1.03618 0.92523 1.24919 0.96388 0.94994 0.97813 1.69935 1.31848 1.28290 1.23499 0.86517 0.83159 0.77426 0.80456 1.20678 1.21114 1.19928 1.17887 0.79312 0.86714 0.82512 1.90771 1.47472 1.18647 1.83032 1.19686 0.95515 1.02089 0.98715 1.21854 0.98338 0.92349 0.95968 1.20973 0.99501 1.02511 0.96092 1.21004 0.92956 0.95907 0.98446 1.21145 1.02624 1.01197 0.99328 1.18966 0.87720 0.87726 0.92225 1.86311 1.32777 1.54532 1.42481 1.23103 0.89719 0.98245 0.95279 1.23453 1.02836 0.94464 1.01046 1.23355 0.92654 1.02770 1.01935 0.91221 0.91968 0.92665 0.90907 0.89458 0.94799 0.93904 0.92816 0.82994 0.85550 0.85766 0.85007 0.85966 0.87410 0.87975 0.87752 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.22 37.16 0.34 -2.12 16 2 C 0.08 1.42 5.64 -4.04 -0.02 1.39 16 3 N -0.59 -13.39 2.53 -176.29 -0.45 -13.83 16 4 C 0.25 6.72 5.06 -5.20 -0.03 6.70 16 5 C -0.52 -15.38 9.39 -34.44 -0.32 -15.70 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.55 12.81 7.30 -12.47 -0.09 12.72 16 14 O -0.52 -14.46 15.43 -13.28 -0.20 -14.67 16 15 C -0.16 -2.89 5.44 -104.84 -0.57 -3.46 16 16 C -0.07 -0.96 7.35 -39.20 -0.29 -1.25 16 17 C -0.17 -1.97 10.02 -39.64 -0.40 -2.36 16 18 C -0.06 -0.71 10.03 -39.53 -0.40 -1.10 16 19 C -0.22 -2.89 9.18 -39.47 -0.36 -3.25 16 20 C 0.18 3.12 6.66 -38.70 -0.26 2.87 16 21 O -0.25 -4.70 8.95 -37.23 -0.33 -5.03 16 22 C -0.01 -0.09 6.20 -26.73 -0.17 -0.26 16 23 C -0.18 -2.16 10.48 -26.70 -0.28 -2.44 16 24 C -0.17 -2.04 10.48 -26.70 -0.28 -2.32 16 25 H 0.07 1.12 7.11 -51.93 -0.37 0.75 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.31 4.01 -51.93 -0.21 1.10 16 30 H 0.03 0.91 6.98 -51.93 -0.36 0.55 16 31 H 0.04 1.31 7.44 -51.93 -0.39 0.92 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.15 1.99 3.52 -52.48 -0.18 1.81 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.13 1.33 5.52 -52.49 -0.29 1.04 16 37 H 0.12 1.26 5.33 -51.93 -0.28 0.98 16 38 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -35.75 336.90 -8.77 -44.52 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.36 Total: 1.81 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.22 Total: -8.89 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.29 Total: -40.33 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.54 Total: -19.70 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.75 -8.77 -44.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287814647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.633 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds