Wall clock time and date at job start Tue Mar 31 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47079 * 2 1 4 4 C 1.46499 * 120.00114 * 290.32213 * 3 2 1 5 5 C 1.50696 * 109.47197 * 270.00243 * 4 3 2 6 6 H 1.08006 * 120.00102 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00123 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00221 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47224 * 89.99305 * 9 7 5 11 11 H 1.48496 * 109.47122 * 209.99466 * 9 7 5 12 12 H 1.48507 * 109.47079 * 329.99400 * 9 7 5 13 13 C 1.34782 * 119.99649 * 110.32721 * 3 2 1 14 14 O 1.21588 * 119.99984 * 178.30377 * 13 3 2 15 15 C 1.47536 * 120.00073 * 358.29842 * 13 3 2 16 16 C 1.39713 * 120.19220 * 327.51894 * 15 13 3 17 17 C 1.37780 * 119.90907 * 179.97438 * 16 15 13 18 18 C 1.38546 * 120.30025 * 359.97438 * 17 16 15 19 19 C 1.38059 * 120.39132 * 0.02562 * 18 17 16 20 20 C 1.38713 * 120.08315 * 0.02562 * 19 18 17 21 21 O 1.35654 * 120.14966 * 179.97438 * 20 19 18 22 22 C 1.42899 * 116.99726 * 354.60029 * 21 20 19 23 23 C 1.53000 * 117.49722 * 224.96071 * 22 21 20 24 24 C 1.53001 * 117.49633 * 156.30615 * 22 21 20 25 25 H 1.09002 * 109.47046 * 59.99884 * 1 2 3 26 26 H 1.09005 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47469 * 300.00152 * 1 2 3 28 28 H 1.09004 * 109.47223 * 239.99881 * 2 1 3 29 29 H 1.09002 * 109.47046 * 120.00116 * 2 1 3 30 30 H 1.08995 * 109.47080 * 30.00313 * 4 3 2 31 31 H 1.09005 * 109.46868 * 150.00368 * 4 3 2 32 32 H 0.97000 * 119.99539 * 180.02562 * 8 7 5 33 33 H 1.08005 * 120.04148 * 359.97438 * 16 15 13 34 34 H 1.08002 * 119.84971 * 180.25479 * 17 16 15 35 35 H 1.08006 * 119.80673 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.95676 * 179.97438 * 19 18 17 37 37 H 1.08999 * 115.55416 * 10.64126 * 22 21 20 38 38 H 1.08999 * 117.49995 * 0.02562 * 23 22 21 39 39 H 1.09002 * 117.49594 * 145.02545 * 23 22 21 40 40 H 1.08999 * 117.50092 * 214.98475 * 24 22 21 41 41 H 1.09006 * 117.49754 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.8471 2.2187 -1.1897 5 6 3.0445 2.0617 -2.0911 6 1 3.8525 1.4042 -1.8061 7 6 3.1090 2.7583 -3.2793 8 7 2.1253 3.5594 -3.6261 9 14 4.5936 2.5643 -4.3963 10 1 4.3539 1.4508 -5.3492 11 1 4.8126 3.8239 -5.1517 12 1 5.7945 2.2639 -3.5759 13 6 2.6252 1.8814 1.0946 14 8 3.0580 3.0175 1.0840 15 6 2.7643 1.0502 2.3056 16 6 1.7856 0.1060 2.6260 17 6 1.9217 -0.6674 3.7581 18 6 3.0255 -0.5139 4.5811 19 6 4.0001 0.4153 4.2763 20 6 3.8788 1.2033 3.1411 21 8 4.8353 2.1171 2.8407 22 6 5.8810 2.3000 3.7973 23 6 6.2840 3.7363 4.1374 24 6 7.2114 2.8608 3.2909 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.9477 1.9119 -1.7236 31 1 1.7530 3.2622 -0.8890 32 1 2.1705 4.0491 -4.4621 33 1 0.9236 -0.0174 1.9870 34 1 1.1666 -1.3999 4.0026 35 1 3.1239 -1.1241 5.4668 36 1 4.8575 0.5295 4.9230 37 1 5.9183 1.5633 4.5998 38 1 5.7512 4.5416 3.6318 39 1 6.5867 3.9444 5.1636 40 1 8.1239 2.4934 3.7605 41 1 7.2891 3.0899 2.2280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287814647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:27 Heat of formation + Delta-G solvation = -10.650874 kcal Electronic energy + Delta-G solvation = -23296.022598 eV Core-core repulsion = 19949.716259 eV Total energy + Delta-G solvation = -3346.306339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75156 -40.28454 -38.64376 -37.16838 -36.15703 -34.99565 -32.55661 -31.57103 -30.75295 -29.12450 -25.62379 -25.09223 -24.38976 -23.44002 -23.25218 -22.04704 -20.73575 -19.21128 -18.64412 -18.13532 -17.52306 -16.84281 -16.53142 -16.34943 -16.05991 -15.84558 -15.50581 -15.27594 -14.95396 -14.57498 -14.33023 -14.28124 -13.51915 -13.33525 -13.26051 -13.14173 -13.05693 -12.74851 -12.64563 -12.53968 -12.51798 -12.22800 -12.05973 -11.82328 -11.73817 -11.43167 -11.03864 -10.67828 -10.62497 -9.90136 -9.48702 -9.11647 -8.25867 -6.40681 -0.01500 0.40164 1.30559 1.34560 1.45058 1.94945 2.07027 2.28164 2.40996 2.69453 2.91670 3.02535 3.53979 3.62014 3.89202 3.90847 3.93568 4.02167 4.11070 4.21531 4.34182 4.39255 4.53369 4.61479 4.64392 4.70061 4.80880 4.89794 4.93597 4.94603 5.04684 5.13426 5.14302 5.27219 5.36742 5.37836 5.49597 5.54744 5.82508 5.84749 6.03940 6.47343 6.66110 6.76662 7.24198 7.46479 8.81240 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.005848 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.823636 B = 4786.529253 C = 6391.587036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 N -0.598 5.598 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.044 0.956 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.538 3.462 14 O -0.589 6.589 15 C -0.198 4.198 16 C -0.070 4.070 17 C -0.158 4.158 18 C -0.045 4.045 19 C -0.219 4.219 20 C 0.154 3.846 21 O -0.302 6.302 22 C -0.025 4.025 23 C -0.179 4.179 24 C -0.169 4.169 25 H 0.043 0.957 26 H 0.107 0.893 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.031 0.969 31 H -0.007 1.007 32 H 0.268 0.732 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -13.069 20.222 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.045 4.045 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.583 4.583 6 H 0.062 0.938 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.328 3.672 14 O -0.471 6.471 15 C -0.202 4.202 16 C -0.088 4.088 17 C -0.175 4.175 18 C -0.063 4.063 19 C -0.237 4.237 20 C 0.107 3.893 21 O -0.215 6.215 22 C -0.080 4.080 23 C -0.216 4.216 24 C -0.206 4.206 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.049 0.951 31 H 0.011 0.989 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.189 0.811 35 H 0.192 0.808 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.728 -12.230 19.852 23.476 hybrid contribution 0.686 0.861 -1.344 1.737 sum 3.414 -11.369 18.508 21.988 Atomic orbital electron populations 1.22176 0.93876 1.04194 1.01953 1.22398 0.96084 0.81799 1.04268 1.48139 1.56834 1.14421 1.13422 1.18692 0.96079 0.89178 0.81709 1.21655 1.05115 1.26821 1.04676 0.93760 1.25851 0.99591 0.94279 0.99288 1.70048 1.33698 1.28700 1.24172 0.85420 0.78678 0.78349 0.78380 1.18268 1.20121 1.20391 1.18834 0.77718 0.86591 0.84018 1.90702 1.50219 1.21659 1.84520 1.19486 0.98687 1.04293 0.97704 1.21969 0.97380 0.91868 0.97613 1.21482 1.00367 1.01607 0.94072 1.21639 0.91172 0.94375 0.99119 1.21510 1.04194 1.00293 0.97683 1.19362 0.87456 0.88731 0.93765 1.86245 1.34356 1.55720 1.45134 1.23617 0.88974 0.99752 0.95702 1.23508 1.02339 0.93033 1.02707 1.23437 0.93905 1.02779 1.00465 0.93831 0.87481 0.91760 0.91947 0.86489 0.95139 0.98918 0.92278 0.82282 0.81148 0.80824 0.82039 0.82247 0.90793 0.84031 0.83783 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 9.22 71.98 0.66 -3.89 16 2 C 0.08 2.66 5.64 86.38 0.49 3.14 16 3 N -0.60 -28.98 2.53 -829.91 -2.10 -31.08 16 4 C 0.26 15.58 5.06 85.63 0.43 16.01 16 5 C -0.54 -34.09 9.39 25.60 0.24 -33.85 16 6 H 0.04 2.81 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 9 Si 0.97 47.60 29.54 68.60 2.03 49.63 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 13 C 0.54 27.16 7.30 86.69 0.63 27.79 16 14 O -0.59 -36.13 15.43 13.76 0.21 -35.92 16 15 C -0.20 -7.50 5.44 -20.01 -0.11 -7.61 16 16 C -0.07 -1.87 7.35 22.52 0.17 -1.70 16 17 C -0.16 -2.76 10.02 22.23 0.22 -2.54 16 18 C -0.05 -0.72 10.03 22.30 0.22 -0.50 16 19 C -0.22 -4.86 9.18 22.34 0.21 -4.66 16 20 C 0.15 5.33 6.66 22.84 0.15 5.48 16 21 O -0.30 -12.02 8.95 -71.94 -0.64 -12.66 16 22 C -0.03 -0.67 6.20 30.59 0.19 -0.48 16 23 C -0.18 -4.31 10.48 30.62 0.32 -3.99 16 24 C -0.17 -4.06 10.48 30.62 0.32 -3.74 16 25 H 0.04 1.43 7.11 -2.39 -0.02 1.41 16 26 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.06 1.66 6.94 -2.39 -0.02 1.65 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.12 3.40 4.01 -2.39 -0.01 3.39 16 30 H 0.03 1.78 6.98 -2.39 -0.02 1.76 16 31 H -0.01 -0.49 7.44 -2.38 -0.02 -0.51 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.16 3.84 3.52 -2.91 -0.01 3.83 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.16 2.48 5.52 -2.91 -0.02 2.47 16 37 H 0.16 2.80 5.33 -2.39 -0.01 2.79 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.14 2.23 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -89.38 336.90 5.44 -83.94 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.05 Total: 13.95 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 4.61 Total: -9.52 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.81 Total: -89.42 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.43 Total: -48.58 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -89.38 5.44 -83.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287814647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.289 kcal (2) G-P(sol) polarization free energy of solvation -89.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds