Wall clock time and date at job start Tue Mar 31 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47156 * 2 1 4 4 C 1.42904 * 114.00077 * 179.97438 * 3 2 1 5 5 C 1.53781 * 113.61316 * 112.50140 * 4 3 2 6 6 C 1.53784 * 87.07989 * 89.11661 * 5 4 3 7 7 C 1.50694 * 113.61452 * 139.98115 * 6 5 4 8 8 O 1.21279 * 120.00207 * 259.28074 * 7 6 5 9 9 N 1.34778 * 119.99987 * 79.28014 * 7 6 5 10 10 C 1.37138 * 120.00268 * 3.09227 * 9 7 6 11 11 H 1.08004 * 119.99400 * 305.65556 * 10 9 7 12 12 C 1.38885 * 120.00312 * 125.65412 * 10 9 7 13 13 N 1.31421 * 119.99812 * 181.07843 * 12 10 9 14 14 Si 1.86792 * 120.00102 * 1.07589 * 12 10 9 15 15 H 1.48504 * 109.47134 * 95.26125 * 14 12 10 16 16 H 1.48502 * 109.47443 * 215.25783 * 14 12 10 17 17 H 1.48500 * 109.47299 * 335.25666 * 14 12 10 18 18 C 1.39792 * 119.99931 * 183.08874 * 9 7 6 19 19 C 1.38956 * 120.07932 * 351.28545 * 18 9 7 20 20 C 1.38080 * 119.92447 * 179.74227 * 19 18 9 21 21 C 1.38313 * 120.07572 * 0.53671 * 20 19 18 22 22 C 1.38311 * 120.15200 * 359.72130 * 21 20 19 23 23 C 1.38077 * 120.08159 * 0.02562 * 22 21 20 24 24 C 1.53777 * 113.61220 * 209.99903 * 4 3 2 25 25 H 1.08997 * 109.47020 * 60.00566 * 1 2 3 26 26 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47308 * 299.99972 * 1 2 3 28 28 H 1.08998 * 109.47172 * 239.99630 * 2 1 3 29 29 H 1.09004 * 109.47354 * 119.99585 * 2 1 3 30 30 H 1.08996 * 112.90770 * 341.25168 * 4 3 2 31 31 H 1.08996 * 113.61257 * 203.66272 * 5 4 3 32 32 H 1.09005 * 113.61498 * 334.57226 * 5 4 3 33 33 H 1.09009 * 113.69190 * 270.87533 * 6 5 4 34 34 H 0.96996 * 120.00303 * 179.97438 * 13 12 10 35 35 H 1.08009 * 120.03620 * 0.02562 * 19 18 9 36 36 H 1.07996 * 119.96417 * 180.25681 * 20 19 18 37 37 H 1.08000 * 119.92206 * 179.69595 * 21 20 19 38 38 H 1.08008 * 119.95588 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.04188 * 179.97438 * 23 22 21 40 40 H 1.09003 * 113.61903 * 25.43384 * 24 4 3 41 41 H 1.09006 * 113.61556 * 156.33755 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0029 2.0461 -1.3010 6 6 3.8396 3.4326 -0.6561 7 6 4.9841 4.3701 -0.9423 8 8 5.8439 4.5505 -0.1063 9 7 5.0522 5.0083 -2.1275 10 6 4.0476 4.8539 -3.0482 11 1 3.7555 3.8644 -3.3678 12 6 3.4059 5.9698 -3.5695 13 7 2.4289 5.8210 -4.4359 14 14 3.9313 7.6821 -3.0394 15 1 4.9023 8.2282 -4.0213 16 1 2.7409 8.5677 -2.9756 17 1 4.5683 7.6119 -1.6998 18 6 6.1469 5.8277 -2.4182 19 6 7.0725 6.1309 -1.4272 20 6 8.1554 6.9362 -1.7193 21 6 8.3135 7.4499 -2.9937 22 6 7.3912 7.1545 -3.9812 23 6 6.3087 6.3456 -3.6975 24 6 3.9483 2.7253 0.7051 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9288 0.5459 0.3236 31 1 5.0411 1.7698 -1.4850 32 1 3.3620 1.8901 -2.1689 33 1 2.8651 3.8870 -0.8354 34 1 1.9804 6.6003 -4.7998 35 1 6.9475 5.7334 -0.4308 36 1 8.8775 7.1689 -0.9506 37 1 9.1588 8.0836 -3.2182 38 1 7.5175 7.5577 -4.9752 39 1 5.5887 6.1157 -4.4689 40 1 3.2633 3.1175 1.4569 41 1 4.9716 2.6347 1.0696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288681807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:00 Heat of formation + Delta-G solvation = -9.343131 kcal Electronic energy + Delta-G solvation = -23464.222282 eV Core-core repulsion = 20117.972651 eV Total energy + Delta-G solvation = -3346.249631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36733 -38.96978 -37.42625 -35.54770 -35.07984 -32.17839 -30.86535 -30.11731 -29.24208 -25.75382 -25.32092 -25.00148 -22.78581 -22.03738 -21.42699 -19.97369 -18.85943 -18.06614 -16.74506 -16.11838 -15.75559 -15.55426 -15.45982 -14.96770 -14.69357 -13.89377 -13.84637 -13.54068 -13.10155 -13.00926 -12.82486 -12.64084 -12.46686 -12.35027 -12.03937 -11.92483 -11.40652 -11.31823 -11.23335 -11.09657 -10.89065 -10.62745 -10.26884 -10.22732 -10.07071 -9.96499 -9.36609 -9.24791 -8.96171 -8.32224 -8.02597 -7.04853 -6.51836 -4.46289 2.04873 2.16965 3.16964 3.26550 3.36672 3.54346 3.72024 4.09414 4.19557 4.60485 4.86312 4.88314 4.97525 5.09984 5.18605 5.31232 5.35208 5.40225 5.52578 5.61286 5.64958 5.83077 5.89902 5.91598 6.00508 6.08516 6.12395 6.21286 6.30864 6.39202 6.44700 6.50282 6.58126 6.78491 6.82608 7.18000 7.27776 7.31570 7.38400 7.45762 7.75797 8.01549 8.22315 8.80632 9.11383 9.40449 10.50445 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005327 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.289498 B = 5255.175251 C = 6185.210664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.063 3.937 5 C -0.134 4.134 6 C -0.098 4.098 7 C 0.507 3.493 8 O -0.562 6.562 9 N -0.407 5.407 10 C -0.362 4.362 11 H 0.111 0.889 12 C 0.081 3.919 13 N -0.858 5.858 14 Si 0.871 3.129 15 H -0.255 1.255 16 H -0.291 1.291 17 H -0.259 1.259 18 C 0.159 3.841 19 C -0.186 4.186 20 C -0.109 4.109 21 C -0.174 4.174 22 C -0.105 4.105 23 C -0.162 4.162 24 C -0.122 4.122 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.278 0.722 35 H 0.178 0.822 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.074 0.926 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -6.724 5.486 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.005 3.995 5 C -0.172 4.172 6 C -0.119 4.119 7 C 0.300 3.700 8 O -0.446 6.446 9 N -0.115 5.115 10 C -0.488 4.488 11 H 0.128 0.872 12 C -0.128 4.128 13 N -0.492 5.492 14 Si 0.698 3.302 15 H -0.180 1.180 16 H -0.218 1.218 17 H -0.183 1.183 18 C 0.063 3.937 19 C -0.205 4.205 20 C -0.128 4.128 21 C -0.193 4.193 22 C -0.124 4.124 23 C -0.182 4.182 24 C -0.160 4.160 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.194 0.806 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.093 0.907 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.428 -6.461 5.762 8.775 hybrid contribution 0.231 0.866 -0.286 0.940 sum 1.659 -5.596 5.477 8.003 Atomic orbital electron populations 1.21744 0.93947 1.01890 1.03326 1.22485 0.95459 0.84257 0.99749 1.87935 1.19940 1.25760 1.94565 1.23042 0.81297 0.97726 0.97420 1.23267 1.01349 0.94652 0.97976 1.22319 0.99210 0.93960 0.96415 1.20867 0.86733 0.82004 0.80427 1.90188 1.41513 1.65892 1.46969 1.41505 1.16591 1.39209 1.14204 1.19035 1.11352 0.96289 1.22155 0.87155 1.25481 0.93691 0.99220 0.94417 1.69645 1.20542 1.31890 1.27075 0.86990 0.78180 0.83476 0.81568 1.17968 1.21815 1.18261 1.18541 0.88423 0.93332 0.93424 1.22752 0.94566 1.00512 1.02689 1.21014 0.97872 0.97797 0.96117 1.20903 1.00324 1.03792 0.94275 1.20816 0.94512 0.98388 0.98665 1.21036 0.99926 1.00694 0.96564 1.23163 1.01935 0.94280 0.96581 0.91577 0.91425 0.91971 0.93431 0.93717 0.91098 0.89708 0.89856 0.86043 0.91133 0.80559 0.87029 0.87416 0.86935 0.84396 0.90687 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.66 6.50 37.16 0.24 0.91 16 3 O -0.36 -5.54 10.27 -35.23 -0.36 -5.91 16 4 C 0.06 0.93 4.37 -25.92 -0.11 0.81 16 5 C -0.13 -2.27 6.92 -25.92 -0.18 -2.45 16 6 C -0.10 -1.90 2.99 -90.96 -0.27 -2.17 16 7 C 0.51 11.48 7.10 -10.99 -0.08 11.41 16 8 O -0.56 -13.06 12.34 5.56 0.07 -12.99 16 9 N -0.41 -9.89 2.30 -58.98 -0.14 -10.03 16 10 C -0.36 -9.24 7.86 -14.94 -0.12 -9.36 16 11 H 0.11 2.92 7.36 -52.48 -0.39 2.54 16 12 C 0.08 2.14 4.60 -17.49 -0.08 2.06 16 13 N -0.86 -23.25 13.96 55.49 0.77 -22.48 16 14 Si 0.87 21.33 23.86 -169.99 -4.06 17.28 16 15 H -0.25 -6.00 6.14 56.52 0.35 -5.66 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.26 -6.69 6.50 56.52 0.37 -6.33 16 18 C 0.16 3.81 4.13 -83.69 -0.35 3.46 16 19 C -0.19 -4.16 9.03 -39.37 -0.36 -4.52 16 20 C -0.11 -2.11 10.04 -39.61 -0.40 -2.51 16 21 C -0.17 -3.20 10.04 -39.53 -0.40 -3.60 16 22 C -0.11 -2.09 9.77 -39.61 -0.39 -2.47 16 23 C -0.16 -3.69 5.60 -39.37 -0.22 -3.91 16 24 C -0.12 -1.96 7.21 -25.92 -0.19 -2.15 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 31 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 32 H 0.08 1.47 7.98 -51.93 -0.41 1.05 16 33 H 0.12 2.54 7.93 -51.92 -0.41 2.13 16 34 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.18 4.09 4.60 -55.92 -0.26 3.83 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.93 8.06 -52.48 -0.42 1.50 16 39 H 0.14 3.31 5.69 -52.49 -0.30 3.01 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.61 7.48 -51.93 -0.39 1.22 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -28.67 327.24 -7.30 -35.97 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.01 Total: 8.88 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.51 Total: -15.66 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.64 Total: -32.50 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.29 Total: -18.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.06 Total: 17.28 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.67 -7.30 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288681807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.628 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds