Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47156 * 2 1 4 4 C 1.42904 * 114.00077 * 179.97438 * 3 2 1 5 5 C 1.53781 * 113.61316 * 112.50140 * 4 3 2 6 6 C 1.53784 * 87.07989 * 89.11661 * 5 4 3 7 7 C 1.50694 * 113.61452 * 139.98115 * 6 5 4 8 8 O 1.21279 * 120.00207 * 259.28074 * 7 6 5 9 9 N 1.34778 * 119.99987 * 79.28014 * 7 6 5 10 10 C 1.37138 * 120.00268 * 3.09227 * 9 7 6 11 11 H 1.08004 * 119.99400 * 305.65556 * 10 9 7 12 12 C 1.38885 * 120.00312 * 125.65412 * 10 9 7 13 13 N 1.31421 * 119.99812 * 181.07843 * 12 10 9 14 14 Si 1.86792 * 120.00102 * 1.07589 * 12 10 9 15 15 H 1.48504 * 109.47134 * 95.26125 * 14 12 10 16 16 H 1.48502 * 109.47443 * 215.25783 * 14 12 10 17 17 H 1.48500 * 109.47299 * 335.25666 * 14 12 10 18 18 C 1.39792 * 119.99931 * 183.08874 * 9 7 6 19 19 C 1.38956 * 120.07932 * 351.28545 * 18 9 7 20 20 C 1.38080 * 119.92447 * 179.74227 * 19 18 9 21 21 C 1.38313 * 120.07572 * 0.53671 * 20 19 18 22 22 C 1.38311 * 120.15200 * 359.72130 * 21 20 19 23 23 C 1.38077 * 120.08159 * 0.02562 * 22 21 20 24 24 C 1.53777 * 113.61220 * 209.99903 * 4 3 2 25 25 H 1.08997 * 109.47020 * 60.00566 * 1 2 3 26 26 H 1.09004 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47308 * 299.99972 * 1 2 3 28 28 H 1.08998 * 109.47172 * 239.99630 * 2 1 3 29 29 H 1.09004 * 109.47354 * 119.99585 * 2 1 3 30 30 H 1.08996 * 112.90770 * 341.25168 * 4 3 2 31 31 H 1.08996 * 113.61257 * 203.66272 * 5 4 3 32 32 H 1.09005 * 113.61498 * 334.57226 * 5 4 3 33 33 H 1.09009 * 113.69190 * 270.87533 * 6 5 4 34 34 H 0.96996 * 120.00303 * 179.97438 * 13 12 10 35 35 H 1.08009 * 120.03620 * 0.02562 * 19 18 9 36 36 H 1.07996 * 119.96417 * 180.25681 * 20 19 18 37 37 H 1.08000 * 119.92206 * 179.69595 * 21 20 19 38 38 H 1.08008 * 119.95588 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.04188 * 179.97438 * 23 22 21 40 40 H 1.09003 * 113.61903 * 25.43384 * 24 4 3 41 41 H 1.09006 * 113.61556 * 156.33755 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0029 2.0461 -1.3010 6 6 3.8396 3.4326 -0.6561 7 6 4.9841 4.3701 -0.9423 8 8 5.8439 4.5505 -0.1063 9 7 5.0522 5.0083 -2.1275 10 6 4.0476 4.8539 -3.0482 11 1 3.7555 3.8644 -3.3678 12 6 3.4059 5.9698 -3.5695 13 7 2.4289 5.8210 -4.4359 14 14 3.9313 7.6821 -3.0394 15 1 4.9023 8.2282 -4.0213 16 1 2.7409 8.5677 -2.9756 17 1 4.5683 7.6119 -1.6998 18 6 6.1469 5.8277 -2.4182 19 6 7.0725 6.1309 -1.4272 20 6 8.1554 6.9362 -1.7193 21 6 8.3135 7.4499 -2.9937 22 6 7.3912 7.1545 -3.9812 23 6 6.3087 6.3456 -3.6975 24 6 3.9483 2.7253 0.7051 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9288 0.5459 0.3236 31 1 5.0411 1.7698 -1.4850 32 1 3.3620 1.8901 -2.1689 33 1 2.8651 3.8870 -0.8354 34 1 1.9804 6.6003 -4.7998 35 1 6.9475 5.7334 -0.4308 36 1 8.8775 7.1689 -0.9506 37 1 9.1588 8.0836 -3.2182 38 1 7.5175 7.5577 -4.9752 39 1 5.5887 6.1157 -4.4689 40 1 3.2633 3.1175 1.4569 41 1 4.9716 2.6347 1.0696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288681807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -25.705141 kcal Electronic energy + Delta-G solvation = -23464.931792 eV Core-core repulsion = 20117.972651 eV Total energy + Delta-G solvation = -3346.959141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03899 -40.36341 -38.94830 -36.96546 -36.75762 -34.16584 -31.84130 -31.73287 -30.84998 -27.46935 -26.70839 -26.67029 -23.70252 -23.61692 -23.03847 -21.56337 -20.49144 -19.76614 -18.31515 -17.65820 -17.41645 -17.07672 -16.61374 -16.43492 -16.29339 -15.63626 -15.42710 -15.08735 -14.70354 -14.58118 -14.31415 -14.22288 -13.88831 -13.70326 -13.36341 -13.29634 -13.17620 -12.70338 -12.51900 -12.44024 -12.36196 -12.15943 -12.05538 -11.87517 -11.52209 -11.29170 -11.23987 -10.86633 -10.41323 -10.02614 -9.67200 -8.85741 -8.51686 -6.49371 0.41225 0.52560 1.21329 1.26999 1.37055 1.79896 2.11826 2.46758 2.67531 2.73807 3.08639 3.57243 3.66413 3.84228 3.93023 4.12772 4.17703 4.24659 4.32193 4.38965 4.43681 4.48521 4.55121 4.66887 4.75455 4.77573 4.84877 4.87410 4.91897 5.04469 5.08948 5.14832 5.22382 5.30625 5.33492 5.51071 5.58794 5.65855 5.71846 5.98508 6.05044 6.38861 6.39656 6.83409 7.22424 7.54452 8.50135 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005327 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.289498 B = 5255.175251 C = 6185.210664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.389 6.389 4 C 0.082 3.918 5 C -0.131 4.131 6 C -0.111 4.111 7 C 0.500 3.500 8 O -0.571 6.571 9 N -0.422 5.422 10 C -0.350 4.350 11 H 0.091 0.909 12 C 0.053 3.947 13 N -0.891 5.891 14 Si 0.917 3.083 15 H -0.238 1.238 16 H -0.292 1.292 17 H -0.281 1.281 18 C 0.129 3.871 19 C -0.206 4.206 20 C -0.104 4.104 21 C -0.159 4.159 22 C -0.106 4.106 23 C -0.184 4.184 24 C -0.112 4.112 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.282 0.718 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -6.625 6.210 9.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.309 6.309 4 C 0.024 3.976 5 C -0.169 4.169 6 C -0.132 4.132 7 C 0.293 3.707 8 O -0.455 6.455 9 N -0.131 5.131 10 C -0.477 4.477 11 H 0.108 0.892 12 C -0.154 4.154 13 N -0.526 5.526 14 Si 0.744 3.256 15 H -0.162 1.162 16 H -0.220 1.220 17 H -0.206 1.206 18 C 0.034 3.966 19 C -0.226 4.226 20 C -0.122 4.122 21 C -0.178 4.178 22 C -0.124 4.124 23 C -0.205 4.205 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.268 -6.365 6.478 9.652 hybrid contribution -0.233 0.816 -0.496 0.983 sum 3.035 -5.549 5.982 8.705 Atomic orbital electron populations 1.21776 0.93182 1.03402 1.02415 1.22773 0.96190 0.82744 1.01123 1.87917 1.20082 1.28344 1.94518 1.22889 0.81513 0.98348 0.94837 1.23261 1.01567 0.93381 0.98722 1.22404 0.96723 0.94379 0.99705 1.21409 0.87418 0.81894 0.79963 1.90172 1.42134 1.66208 1.47002 1.41605 1.16876 1.40144 1.14511 1.18822 1.11545 0.95409 1.21884 0.89179 1.25865 0.93717 1.01244 0.94560 1.69695 1.21752 1.32667 1.28522 0.86297 0.77790 0.81230 0.80289 1.16221 1.21986 1.20611 1.18822 0.89050 0.94238 0.94529 1.22782 0.95817 1.02029 1.01988 1.21444 0.97050 0.96031 0.97691 1.21400 1.00664 1.02672 0.93082 1.21241 0.93442 0.97113 1.00616 1.21038 1.01185 1.02521 0.95755 1.23121 1.02486 0.94465 0.94875 0.93197 0.88700 0.92164 0.92830 0.91430 0.87558 0.89246 0.91403 0.88434 0.90771 0.81744 0.83450 0.82831 0.83984 0.86460 0.90201 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 10.28 71.98 0.74 -2.15 16 2 C 0.05 1.02 6.50 71.98 0.47 1.49 16 3 O -0.39 -11.61 10.27 -148.98 -1.53 -13.14 16 4 C 0.08 2.32 4.37 31.12 0.14 2.45 16 5 C -0.13 -4.51 6.92 31.12 0.22 -4.30 16 6 C -0.11 -4.46 2.99 -11.01 -0.03 -4.49 16 7 C 0.50 23.37 7.10 87.66 0.62 23.99 16 8 O -0.57 -27.01 12.34 -3.03 -0.04 -27.04 16 9 N -0.42 -21.22 2.30 -458.90 -1.06 -22.28 16 10 C -0.35 -18.68 7.86 84.02 0.66 -18.02 16 11 H 0.09 5.08 7.36 -2.91 -0.02 5.06 16 12 C 0.05 2.84 4.60 84.91 0.39 3.23 16 13 N -0.89 -49.84 13.96 21.65 0.30 -49.53 16 14 Si 0.92 44.98 23.86 68.60 1.64 46.61 16 15 H -0.24 -10.88 6.14 99.48 0.61 -10.27 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 17 H -0.28 -14.71 6.50 99.48 0.65 -14.06 16 18 C 0.13 6.23 4.13 38.22 0.16 6.39 16 19 C -0.21 -9.12 9.03 22.40 0.20 -8.92 16 20 C -0.10 -3.68 10.04 22.25 0.22 -3.46 16 21 C -0.16 -5.18 10.04 22.30 0.22 -4.95 16 22 C -0.11 -3.90 9.77 22.25 0.22 -3.68 16 23 C -0.18 -8.35 5.60 22.41 0.13 -8.22 16 24 C -0.11 -3.56 7.21 31.12 0.22 -3.33 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.11 2.29 7.87 -2.39 -0.02 2.27 16 31 H 0.09 2.96 8.09 -2.39 -0.02 2.94 16 32 H 0.07 2.51 7.98 -2.38 -0.02 2.49 16 33 H 0.10 4.35 7.93 -2.38 -0.02 4.33 16 34 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.17 7.65 4.60 -57.32 -0.26 7.39 16 36 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.12 5.73 5.69 -2.91 -0.02 5.72 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.11 3.27 7.48 -2.38 -0.02 3.25 16 Total: -1.00 -64.03 327.24 4.50 -59.53 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.61 Total: 29.82 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.57 Total: -23.96 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -0.75 Total: -71.81 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.57 Total: -40.18 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.64 Total: 46.61 kcal Total: -64.03 4.50 -59.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288681807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.823 kcal (2) G-P(sol) polarization free energy of solvation -64.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds