Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99853 * 2 1 4 4 C 1.38444 * 119.76815 * 359.95494 * 3 2 1 5 5 C 1.38136 * 119.76629 * 179.97438 * 4 3 2 6 6 C 1.38028 * 119.77445 * 0.19659 * 5 4 3 7 7 C 1.38837 * 120.62675 * 0.04410 * 6 5 4 8 8 C 1.37615 * 119.87993 * 359.58765 * 7 6 5 9 9 C 1.50599 * 122.89393 * 180.61032 * 8 7 6 10 10 C 1.52787 * 110.82260 * 340.27722 * 9 8 7 11 11 N 1.47136 * 107.94844 * 47.40394 * 10 9 8 12 12 C 1.34775 * 121.36719 * 115.63976 * 11 10 9 13 13 O 1.21283 * 120.00313 * 0.03665 * 12 11 10 14 14 C 1.50700 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.47061 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47061 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99984 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99895 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00080 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47018 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47471 * 119.99860 * 20 18 16 23 23 H 1.48506 * 109.47353 * 239.99650 * 20 18 16 24 24 C 1.46685 * 117.28011 * 295.67327 * 11 10 9 25 25 H 1.09004 * 109.47229 * 299.99824 * 1 2 3 26 26 H 1.09000 * 109.47429 * 59.99438 * 1 2 3 27 27 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.11998 * 359.95149 * 4 3 2 29 29 H 1.07999 * 120.11211 * 180.17741 * 5 4 3 30 30 H 1.07997 * 119.68418 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.20072 * 100.60911 * 9 8 7 32 32 H 1.09002 * 109.19759 * 219.94558 * 9 8 7 33 33 H 1.09000 * 109.77747 * 166.97282 * 10 9 8 34 34 H 1.09010 * 109.77608 * 287.77410 * 10 9 8 35 35 H 1.09005 * 109.47179 * 300.00320 * 14 12 11 36 36 H 1.08999 * 109.47011 * 60.00617 * 14 12 11 37 37 H 1.09005 * 109.46835 * 299.99857 * 15 14 12 38 38 H 1.08999 * 109.47255 * 60.00092 * 15 14 12 39 39 H 0.97003 * 119.99635 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.43290 * 284.28469 * 24 11 10 41 41 H 1.09000 * 109.43308 * 164.41328 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2872 2.3690 -0.0009 5 6 1.9143 3.5997 -0.0004 6 6 3.2930 3.6666 -0.0030 7 6 4.0573 2.5075 -0.0072 8 6 3.4386 1.2783 0.0000 9 6 4.2004 -0.0208 0.0096 10 6 5.6355 0.1876 -0.4716 11 7 6.1856 1.3552 0.2349 12 6 7.2231 1.2350 1.0867 13 8 7.7235 0.1479 1.2834 14 6 7.7617 2.4516 1.7944 15 6 8.9291 2.0426 2.6950 16 6 9.4681 3.2592 3.4023 17 1 9.0224 4.2273 3.2273 18 6 10.5296 3.1363 4.2735 19 7 11.0714 1.9572 4.4877 20 14 11.1973 4.6443 5.1508 21 1 10.4189 5.8407 4.7407 22 1 11.0793 4.4557 6.6190 23 1 12.6250 4.8355 4.7895 24 6 5.5581 2.6553 -0.0250 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2088 2.3103 -0.0025 29 1 1.3279 4.5067 0.0018 30 1 3.7818 4.6296 -0.0022 31 1 4.2168 -0.4192 1.0240 32 1 3.7019 -0.7335 -0.6475 33 1 6.2327 -0.6952 -0.2437 34 1 5.6413 0.3704 -1.5462 35 1 8.1081 3.1767 1.0580 36 1 6.9736 2.8977 2.4009 37 1 8.5830 1.3173 3.4314 38 1 9.7171 1.5966 2.0883 39 1 11.8180 1.8708 5.1010 40 1 5.8749 3.0222 -1.0012 41 1 5.8619 3.3649 0.7446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292014070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -55.975430 kcal Electronic energy + Delta-G solvation = -22591.116391 eV Core-core repulsion = 19242.844633 eV Total energy + Delta-G solvation = -3348.271759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80081 -39.39308 -37.84120 -35.72324 -33.53353 -32.82000 -31.22010 -30.91203 -29.22998 -27.57300 -26.13042 -25.26345 -23.73239 -22.18043 -21.53627 -20.33172 -18.34500 -17.99914 -17.06977 -16.27705 -16.11871 -15.99253 -15.62449 -15.58484 -15.09137 -14.39462 -14.12350 -13.96828 -13.89858 -13.53326 -13.16190 -12.87811 -12.41920 -12.30482 -12.17132 -12.11536 -11.99811 -11.55230 -11.42274 -11.20811 -11.06672 -10.92893 -10.69842 -10.54735 -9.93942 -9.61468 -9.15186 -8.98059 -8.81074 -8.48144 -8.30194 -8.23529 -5.93982 -3.98210 1.12036 1.25367 3.00847 3.21765 3.29416 3.34069 3.41284 3.44531 3.52911 4.48718 4.48753 4.53044 4.74831 4.80326 4.84278 4.93025 5.03990 5.16095 5.21814 5.23415 5.31724 5.41039 5.42764 5.45218 5.49789 5.68336 5.84232 5.95763 6.10338 6.17169 6.23018 6.24083 6.26562 6.41642 6.54416 6.70617 6.92440 7.17594 7.76741 7.77753 7.89009 8.09638 8.40675 8.75430 9.10405 9.65224 11.17039 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.003366 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.878587 B = 8315.941135 C = 8900.283311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.124 3.876 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.149 4.149 7 C -0.056 4.056 8 C -0.095 4.095 9 C -0.086 4.086 10 C 0.111 3.889 11 N -0.626 5.626 12 C 0.517 3.483 13 O -0.531 6.531 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.150 3.850 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.940 1.019 -12.890 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.079 3.921 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.168 4.168 7 C -0.057 4.057 8 C -0.095 4.095 9 C -0.124 4.124 10 C -0.012 4.012 11 N -0.362 5.362 12 C 0.308 3.692 13 O -0.406 6.406 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.027 3.973 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.402 0.122 -12.658 25.731 hybrid contribution -0.158 1.062 0.510 1.189 sum -22.560 1.184 -12.147 25.650 Atomic orbital electron populations 1.23042 0.78580 1.03862 1.01224 1.86070 1.21130 1.26949 1.88621 1.19000 0.91716 0.84212 0.97172 1.21122 0.99804 0.92491 1.09664 1.20808 0.94475 0.96925 0.97968 1.20966 0.93779 0.97873 1.04161 1.19729 0.95810 0.92027 0.98092 1.18850 0.90055 0.95437 1.05199 1.20631 0.94771 0.93989 1.03015 1.21490 0.93230 0.90703 0.95763 1.48237 1.34126 1.07952 1.45907 1.21541 0.77876 0.92291 0.77508 1.90660 1.58205 1.29153 1.62558 1.21903 1.01361 0.94097 0.99555 1.18914 0.90908 0.96604 0.93662 1.21253 1.15692 0.94103 1.25324 0.92556 1.25029 0.96754 0.95811 0.96834 1.70014 1.24091 1.22552 1.36166 0.86542 0.78816 0.83152 0.79483 1.19740 1.21042 1.21034 1.20503 0.87555 0.86472 1.02775 0.92710 0.92773 0.88289 0.85622 0.85702 0.85442 0.90275 0.89727 0.88462 0.91472 0.90182 0.90234 0.95823 0.95779 0.93023 0.90049 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.80 101.05 0.99 1.18 16 2 O -0.31 -3.39 9.47 -19.44 -0.18 -3.58 16 3 C 0.12 1.44 6.65 -39.06 -0.26 1.18 16 4 C -0.21 -2.08 9.02 -39.54 -0.36 -2.44 16 5 C -0.08 -0.78 10.05 -39.70 -0.40 -1.18 16 6 C -0.15 -1.52 9.62 -39.44 -0.38 -1.90 16 7 C -0.06 -0.67 5.82 -104.57 -0.61 -1.28 16 8 C -0.09 -1.20 5.78 -104.46 -0.60 -1.81 16 9 C -0.09 -1.10 5.50 -28.04 -0.15 -1.26 16 10 C 0.11 1.52 6.43 -3.80 -0.02 1.50 16 11 N -0.63 -9.79 2.93 -174.45 -0.51 -10.30 16 12 C 0.52 10.41 7.72 -10.99 -0.08 10.33 16 13 O -0.53 -12.84 15.47 5.56 0.09 -12.75 16 14 C -0.13 -2.68 4.06 -27.88 -0.11 -2.80 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.15 1.85 6.08 -5.03 -0.03 1.82 16 25 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 26 H 0.05 0.29 7.64 -51.93 -0.40 -0.11 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.13 0.93 6.26 -52.48 -0.33 0.60 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.13 1.04 8.05 -52.49 -0.42 0.61 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 33 H 0.10 1.47 7.07 -51.93 -0.37 1.11 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.08 1.50 8.11 -51.93 -0.42 1.07 16 36 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 1.25 6.20 -51.93 -0.32 0.93 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -35.14 336.48 -8.32 -43.46 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.94 Total: -2.26 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.55 Total: -9.49 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.22 Total: -37.19 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.10 Total: -16.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.14 -8.32 -43.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292014070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.515 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds