Wall clock time and date at job start Tue Mar 31 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99853 * 2 1 4 4 C 1.38444 * 119.76815 * 359.95494 * 3 2 1 5 5 C 1.38136 * 119.76629 * 179.97438 * 4 3 2 6 6 C 1.38028 * 119.77445 * 0.19659 * 5 4 3 7 7 C 1.38837 * 120.62675 * 0.04410 * 6 5 4 8 8 C 1.37615 * 119.87993 * 359.58765 * 7 6 5 9 9 C 1.50599 * 122.89393 * 180.61032 * 8 7 6 10 10 C 1.52787 * 110.82260 * 340.27722 * 9 8 7 11 11 N 1.47136 * 107.94844 * 47.40394 * 10 9 8 12 12 C 1.34775 * 121.36719 * 115.63976 * 11 10 9 13 13 O 1.21283 * 120.00313 * 0.03665 * 12 11 10 14 14 C 1.50700 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.53004 * 109.47061 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47061 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99984 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99895 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00080 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47018 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47471 * 119.99860 * 20 18 16 23 23 H 1.48506 * 109.47353 * 239.99650 * 20 18 16 24 24 C 1.46685 * 117.28011 * 295.67327 * 11 10 9 25 25 H 1.09004 * 109.47229 * 299.99824 * 1 2 3 26 26 H 1.09000 * 109.47429 * 59.99438 * 1 2 3 27 27 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.11998 * 359.95149 * 4 3 2 29 29 H 1.07999 * 120.11211 * 180.17741 * 5 4 3 30 30 H 1.07997 * 119.68418 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.20072 * 100.60911 * 9 8 7 32 32 H 1.09002 * 109.19759 * 219.94558 * 9 8 7 33 33 H 1.09000 * 109.77747 * 166.97282 * 10 9 8 34 34 H 1.09010 * 109.77608 * 287.77410 * 10 9 8 35 35 H 1.09005 * 109.47179 * 300.00320 * 14 12 11 36 36 H 1.08999 * 109.47011 * 60.00617 * 14 12 11 37 37 H 1.09005 * 109.46835 * 299.99857 * 15 14 12 38 38 H 1.08999 * 109.47255 * 60.00092 * 15 14 12 39 39 H 0.97003 * 119.99635 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.43290 * 284.28469 * 24 11 10 41 41 H 1.09000 * 109.43308 * 164.41328 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2872 2.3690 -0.0009 5 6 1.9143 3.5997 -0.0004 6 6 3.2930 3.6666 -0.0030 7 6 4.0573 2.5075 -0.0072 8 6 3.4386 1.2783 0.0000 9 6 4.2004 -0.0208 0.0096 10 6 5.6355 0.1876 -0.4716 11 7 6.1856 1.3552 0.2349 12 6 7.2231 1.2350 1.0867 13 8 7.7235 0.1479 1.2834 14 6 7.7617 2.4516 1.7944 15 6 8.9291 2.0426 2.6950 16 6 9.4681 3.2592 3.4023 17 1 9.0224 4.2273 3.2273 18 6 10.5296 3.1363 4.2735 19 7 11.0714 1.9572 4.4877 20 14 11.1973 4.6443 5.1508 21 1 10.4189 5.8407 4.7407 22 1 11.0793 4.4557 6.6190 23 1 12.6250 4.8355 4.7895 24 6 5.5581 2.6553 -0.0250 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2088 2.3103 -0.0025 29 1 1.3279 4.5067 0.0018 30 1 3.7818 4.6296 -0.0022 31 1 4.2168 -0.4192 1.0240 32 1 3.7019 -0.7335 -0.6475 33 1 6.2327 -0.6952 -0.2437 34 1 5.6413 0.3704 -1.5462 35 1 8.1081 3.1767 1.0580 36 1 6.9736 2.8977 2.4009 37 1 8.5830 1.3173 3.4314 38 1 9.7171 1.5966 2.0883 39 1 11.8180 1.8708 5.1010 40 1 5.8749 3.0222 -1.0012 41 1 5.8619 3.3649 0.7446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292014070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:40 Heat of formation + Delta-G solvation = -78.146767 kcal Electronic energy + Delta-G solvation = -22592.077813 eV Core-core repulsion = 19242.844633 eV Total energy + Delta-G solvation = -3349.233180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73280 -40.64807 -38.82092 -36.86639 -35.59868 -34.03162 -32.77260 -32.13615 -30.20969 -28.19965 -27.86236 -26.48203 -24.96266 -23.50943 -22.67923 -21.61204 -19.65708 -18.89789 -18.69164 -17.71405 -17.13985 -17.01997 -16.74168 -16.62978 -16.43193 -16.23936 -15.38968 -14.90280 -14.79555 -14.50290 -14.47751 -14.20812 -14.14117 -13.54333 -13.35373 -13.20309 -13.04401 -12.85016 -12.78309 -12.48722 -12.37469 -12.31364 -11.94804 -11.87202 -11.60861 -11.54890 -11.27350 -10.72989 -10.56841 -9.80302 -9.58102 -9.04285 -8.16820 -6.30917 0.31994 0.47657 1.43315 1.44967 1.58264 1.65073 1.97002 2.38028 2.44419 2.74589 3.16330 3.62214 3.65661 3.81227 3.97989 4.06628 4.20999 4.24381 4.36015 4.38910 4.40486 4.46190 4.48779 4.52297 4.60943 4.69030 4.70376 4.73995 4.82852 4.91803 5.05427 5.17555 5.36712 5.46505 5.50792 5.54886 5.60424 5.62829 5.81699 5.85912 6.18193 6.38311 6.46447 6.87537 7.21819 7.39374 8.96261 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.003366 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.878587 B = 8315.941135 C = 8900.283311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.213 4.213 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.068 4.068 8 C -0.125 4.125 9 C -0.076 4.076 10 C 0.110 3.890 11 N -0.615 5.615 12 C 0.515 3.485 13 O -0.587 6.587 14 C -0.116 4.116 15 C 0.043 3.957 16 C -0.540 4.540 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.975 3.025 21 H -0.250 1.250 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.144 3.856 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.101 0.899 37 H -0.021 1.021 38 H -0.017 1.017 39 H 0.262 0.738 40 H 0.109 0.891 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.253 4.357 -13.792 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.098 4.098 6 C -0.170 4.170 7 C -0.068 4.068 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.013 4.013 11 N -0.349 5.349 12 C 0.305 3.695 13 O -0.467 6.467 14 C -0.155 4.155 15 C 0.005 3.995 16 C -0.578 4.578 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.174 1.174 22 H -0.208 1.208 23 H -0.206 1.206 24 C 0.022 3.978 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.167 0.833 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.119 0.881 37 H -0.002 1.002 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.784 3.495 -13.603 28.487 hybrid contribution 0.420 -0.020 0.733 0.845 sum -24.363 3.476 -12.870 27.772 Atomic orbital electron populations 1.23318 0.76545 1.05360 1.02239 1.86039 1.23323 1.27028 1.88610 1.19151 0.91588 0.85172 0.97409 1.21458 1.01054 0.92048 1.08561 1.21221 0.94464 0.97877 0.96286 1.21242 0.94283 0.98049 1.03455 1.19754 0.95441 0.92563 0.99089 1.18940 0.90963 0.95294 1.07354 1.20466 0.94166 0.95022 1.01679 1.21619 0.93356 0.89299 0.96981 1.48164 1.32502 1.10136 1.44067 1.21381 0.78803 0.91182 0.78086 1.90639 1.60482 1.30812 1.64760 1.21661 0.99513 0.94908 0.99451 1.18696 0.92174 0.95416 0.93200 1.21734 1.15825 0.95019 1.25197 0.90378 1.26163 0.97174 0.99420 0.97835 1.70198 1.24874 1.25616 1.37215 0.85256 0.78097 0.79053 0.77723 1.17363 1.20766 1.20636 1.20827 0.87977 0.84501 1.04447 0.91963 0.91337 0.86752 0.83263 0.82706 0.83173 0.92841 0.88604 0.90693 0.88765 0.87345 0.88091 1.00238 0.99859 0.92894 0.87341 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.80 113.37 1.11 1.33 16 2 O -0.34 -6.91 9.47 -92.49 -0.88 -7.78 16 3 C 0.11 2.44 6.65 22.61 0.15 2.59 16 4 C -0.21 -3.54 9.02 22.29 0.20 -3.34 16 5 C -0.08 -1.20 10.05 22.20 0.22 -0.98 16 6 C -0.15 -2.57 9.62 22.36 0.22 -2.36 16 7 C -0.07 -1.48 5.82 -19.83 -0.12 -1.60 16 8 C -0.12 -3.05 5.78 -19.76 -0.11 -3.17 16 9 C -0.08 -1.97 5.50 29.75 0.16 -1.80 16 10 C 0.11 3.05 6.43 86.19 0.55 3.61 16 11 N -0.62 -19.09 2.93 -824.24 -2.42 -21.51 16 12 C 0.51 21.34 7.72 87.66 0.68 22.02 16 13 O -0.59 -30.33 15.47 -3.04 -0.05 -30.38 16 14 C -0.12 -4.81 4.06 29.85 0.12 -4.69 16 15 C 0.04 2.43 4.26 29.85 0.13 2.56 16 16 C -0.54 -30.97 9.11 25.60 0.23 -30.73 16 17 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 18 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 19 N -0.94 -60.32 13.29 21.45 0.28 -60.03 16 20 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 21 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 C 0.14 3.23 6.08 85.64 0.52 3.75 16 25 H 0.06 0.59 7.65 -2.39 -0.02 0.57 16 26 H 0.07 0.56 7.64 -2.39 -0.02 0.54 16 27 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.15 1.67 6.26 -2.91 -0.02 1.65 16 29 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.15 1.79 8.05 -2.91 -0.02 1.77 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.20 7.66 -2.39 -0.02 2.18 16 33 H 0.07 2.43 7.07 -2.39 -0.02 2.41 16 34 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.11 3.87 8.11 -2.38 -0.02 3.85 16 36 H 0.10 3.74 7.58 -2.39 -0.02 3.73 16 37 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 38 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 39 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 2.34 6.20 -2.39 -0.01 2.32 16 Total: -1.00 -80.81 336.48 4.52 -76.29 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.02 Total: 9.72 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.53 Total: -12.85 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.13 Total: -81.54 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.92 Total: -38.16 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -80.81 4.52 -76.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292014070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.859 kcal (2) G-P(sol) polarization free energy of solvation -80.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds