Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00133 * 2 1 4 4 N 1.46504 * 109.46877 * 125.00258 * 3 2 1 5 5 C 1.46498 * 119.99787 * 278.16628 * 4 3 2 6 6 C 1.50698 * 109.47314 * 270.00016 * 5 4 3 7 7 H 1.08000 * 119.99839 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00064 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00196 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00011 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47351 * 89.99721 * 10 8 6 12 12 H 1.48502 * 109.47502 * 209.99786 * 10 8 6 13 13 H 1.48501 * 109.46931 * 329.99724 * 10 8 6 14 14 C 1.34773 * 120.00072 * 98.17074 * 4 3 2 15 15 O 1.21581 * 120.00014 * 186.20142 * 14 4 3 16 16 C 1.47610 * 120.00021 * 6.20484 * 14 4 3 17 17 C 1.39731 * 120.08733 * 150.33243 * 16 14 4 18 18 C 1.37707 * 119.90736 * 180.02562 * 17 16 14 19 19 C 1.38990 * 120.08890 * 359.97438 * 18 17 16 20 20 O 1.35706 * 119.91006 * 179.97438 * 19 18 17 21 21 C 1.42903 * 117.00130 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47424 * 180.02562 * 21 20 19 23 23 C 1.38999 * 120.17652 * 0.25895 * 19 18 17 24 24 C 1.37705 * 120.08927 * 359.48042 * 23 19 18 25 25 H 1.08007 * 119.99671 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00419 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00014 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47365 * 5.00584 * 3 2 1 29 29 H 1.09004 * 109.47306 * 245.00087 * 3 2 1 30 30 H 1.08994 * 109.47427 * 30.00622 * 5 4 3 31 31 H 1.09000 * 109.47077 * 150.00127 * 5 4 3 32 32 H 0.97005 * 120.00345 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04558 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.95234 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46979 * 300.00175 * 21 20 19 36 36 H 1.08999 * 109.47026 * 60.00334 * 21 20 19 37 37 H 1.08999 * 109.47120 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46959 * 299.99910 * 22 21 20 39 39 H 1.08999 * 109.46973 * 60.00024 * 22 21 20 40 40 H 1.08003 * 119.95590 * 179.72622 * 23 19 18 41 41 H 1.07997 * 120.04201 * 180.23393 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5129 1.6952 2.4667 6 6 2.6350 3.1852 2.6564 7 1 3.0308 3.8000 1.8616 8 6 2.2404 3.7635 3.8441 9 7 2.3465 5.0639 4.0095 10 14 1.5551 2.7001 5.2185 11 1 2.6653 2.2477 6.0949 12 1 0.5837 3.4893 6.0178 13 1 0.8714 1.5177 4.6355 14 6 4.2920 1.0222 0.9439 15 8 5.0400 0.9341 1.8983 16 6 4.8058 0.7901 -0.4203 17 6 6.1386 1.0784 -0.7254 18 6 6.6138 0.8609 -1.9994 19 6 5.7699 0.3550 -2.9811 20 8 6.2419 0.1426 -4.2355 21 6 5.3208 -0.3784 -5.1958 22 6 6.0291 -0.5504 -6.5410 23 6 4.4422 0.0716 -2.6828 24 6 3.9606 0.2812 -1.4099 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.4687 1.4001 2.5696 31 1 3.1111 1.1828 3.2202 32 1 2.0685 5.4708 4.8451 33 1 6.7948 1.4719 0.0367 34 1 7.6438 1.0839 -2.2361 35 1 4.9488 -1.3448 -4.8553 36 1 4.4856 0.3126 -5.3103 37 1 5.3263 -0.9474 -7.2735 38 1 6.4013 0.4158 -6.8817 39 1 6.8640 -1.2416 -6.4262 40 1 3.7884 -0.3173 -3.4495 41 1 2.9299 0.0571 -1.1780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292439989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = 5.022924 kcal Electronic energy + Delta-G solvation = -22669.431047 eV Core-core repulsion = 19323.804375 eV Total energy + Delta-G solvation = -3345.626672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53101 -39.31213 -37.00340 -36.04401 -33.26718 -32.34584 -32.07321 -31.02097 -30.04159 -27.92540 -25.91951 -24.41055 -23.24778 -22.34306 -21.36888 -20.21926 -18.91640 -18.33801 -16.92914 -16.86106 -16.39685 -16.33515 -15.41645 -15.01793 -14.58040 -14.30076 -14.14800 -13.80257 -13.56272 -13.39288 -13.23550 -12.95723 -12.79751 -12.42950 -12.13229 -11.96807 -11.90044 -11.63318 -11.48112 -11.26830 -10.96754 -10.91349 -10.52962 -10.50400 -10.14030 -9.58784 -9.38069 -9.12142 -8.92898 -8.58432 -8.18906 -7.74266 -6.08314 -4.07283 1.12900 1.33797 2.27536 2.98478 3.27621 3.30152 3.36190 3.38405 3.77582 4.10530 4.40395 4.60042 4.60807 4.77055 4.86134 4.92564 4.94214 5.12396 5.16453 5.24589 5.28123 5.32364 5.43606 5.45470 5.55362 5.66696 5.70581 5.89793 5.98818 6.12540 6.15539 6.24958 6.47526 6.65352 6.66832 6.75005 6.79989 6.97250 7.27123 7.33978 7.61231 8.21153 8.46999 8.90614 8.97038 9.51891 11.04949 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.003908 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.908787 B = 7162.349231 C = 7811.175334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.181 4.181 3 C 0.106 3.894 4 N -0.581 5.581 5 C 0.217 3.783 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.554 3.446 15 O -0.538 6.538 16 C -0.157 4.157 17 C -0.024 4.024 18 C -0.161 4.161 19 C 0.142 3.858 20 O -0.316 6.316 21 C 0.053 3.947 22 C -0.152 4.152 23 C -0.220 4.220 24 C -0.080 4.080 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.130 0.870 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -12.551 -19.324 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.017 4.017 4 N -0.310 5.310 5 C 0.096 3.904 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.342 3.658 15 O -0.416 6.416 16 C -0.160 4.160 17 C -0.043 4.043 18 C -0.179 4.179 19 C 0.097 3.903 20 O -0.230 6.230 21 C -0.023 4.023 22 C -0.209 4.209 23 C -0.238 4.238 24 C -0.097 4.097 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.701 -12.394 -18.734 22.527 hybrid contribution -0.710 -0.427 0.753 1.120 sum 0.991 -12.820 -17.981 22.105 Atomic orbital electron populations 1.23890 0.95737 1.02043 0.99227 1.23386 0.96497 0.99050 1.01035 1.21413 0.93619 0.95315 0.91370 1.47743 1.06962 1.65863 1.10456 1.19677 0.94600 0.96866 0.79224 1.21336 1.43079 0.90455 1.02010 0.90671 1.24838 0.95179 0.94870 0.98012 1.69894 1.47811 1.09784 1.26053 0.86865 0.79439 0.80768 0.82749 1.19846 1.21061 1.19004 1.18091 0.82306 0.77497 0.87919 1.90743 1.56393 1.52061 1.42440 1.20087 0.95091 1.06022 0.94812 1.21080 0.94022 0.93872 0.95359 1.20355 1.00274 1.05603 0.91702 1.19210 0.92429 0.94511 0.84185 1.86020 1.39756 1.79496 1.17681 1.22804 0.92466 0.98536 0.88452 1.21777 1.01586 1.03242 0.94314 1.21167 0.94894 1.09151 0.98624 1.22220 1.00782 0.94920 0.91827 0.87996 0.88508 0.87259 0.89484 0.87774 0.95072 0.94314 0.92546 0.84168 0.84801 0.91932 0.91828 0.90392 0.91489 0.91544 0.85234 0.82182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 14.32 29.02 0.42 -1.63 16 2 C -0.18 -2.43 8.22 -36.02 -0.30 -2.73 16 3 C 0.11 1.72 5.33 -5.19 -0.03 1.70 16 4 N -0.58 -12.33 2.45 -177.64 -0.43 -12.76 16 5 C 0.22 5.40 4.28 -5.20 -0.02 5.38 16 6 C -0.53 -15.37 9.94 -34.44 -0.34 -15.72 16 7 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 8 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 9 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 10 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 14 C 0.55 11.98 7.45 -12.44 -0.09 11.89 16 15 O -0.54 -13.71 16.25 5.29 0.09 -13.62 16 16 C -0.16 -2.69 5.59 -104.96 -0.59 -3.28 16 17 C -0.02 -0.39 9.59 -39.22 -0.38 -0.76 16 18 C -0.16 -2.16 9.97 -39.50 -0.39 -2.55 16 19 C 0.14 1.81 6.70 -39.02 -0.26 1.54 16 20 O -0.32 -3.59 10.12 -18.82 -0.19 -3.78 16 21 C 0.05 0.41 5.45 37.16 0.20 0.61 16 22 C -0.15 -0.90 10.28 37.16 0.38 -0.51 16 23 C -0.22 -2.61 9.01 -39.49 -0.36 -2.97 16 24 C -0.08 -1.10 7.47 -39.22 -0.29 -1.39 16 25 H 0.10 1.20 7.84 -52.48 -0.41 0.79 16 26 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.11 1.38 7.58 -52.49 -0.40 0.98 16 28 H 0.09 1.47 7.78 -51.93 -0.40 1.07 16 29 H 0.10 1.50 4.06 -52.00 -0.21 1.29 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.04 1.03 6.77 -51.93 -0.35 0.68 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.14 2.23 7.91 -52.49 -0.42 1.81 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 36 H 0.06 0.44 7.64 -51.93 -0.40 0.05 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.13 1.16 6.28 -52.48 -0.33 0.83 16 41 H 0.16 2.01 2.81 -52.49 -0.15 1.86 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -34.61 340.46 -6.99 -41.59 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.54 Total: 1.73 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.14 Total: -8.36 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.34 Total: -39.78 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.10 Total: -17.40 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.61 -6.99 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292439989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.616 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds