Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00133 * 2 1 4 4 N 1.46504 * 109.46877 * 125.00258 * 3 2 1 5 5 C 1.46498 * 119.99787 * 278.16628 * 4 3 2 6 6 C 1.50698 * 109.47314 * 270.00016 * 5 4 3 7 7 H 1.08000 * 119.99839 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00064 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00196 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00011 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47351 * 89.99721 * 10 8 6 12 12 H 1.48502 * 109.47502 * 209.99786 * 10 8 6 13 13 H 1.48501 * 109.46931 * 329.99724 * 10 8 6 14 14 C 1.34773 * 120.00072 * 98.17074 * 4 3 2 15 15 O 1.21581 * 120.00014 * 186.20142 * 14 4 3 16 16 C 1.47610 * 120.00021 * 6.20484 * 14 4 3 17 17 C 1.39731 * 120.08733 * 150.33243 * 16 14 4 18 18 C 1.37707 * 119.90736 * 180.02562 * 17 16 14 19 19 C 1.38990 * 120.08890 * 359.97438 * 18 17 16 20 20 O 1.35706 * 119.91006 * 179.97438 * 19 18 17 21 21 C 1.42903 * 117.00130 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47424 * 180.02562 * 21 20 19 23 23 C 1.38999 * 120.17652 * 0.25895 * 19 18 17 24 24 C 1.37705 * 120.08927 * 359.48042 * 23 19 18 25 25 H 1.08007 * 119.99671 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00419 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00014 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47365 * 5.00584 * 3 2 1 29 29 H 1.09004 * 109.47306 * 245.00087 * 3 2 1 30 30 H 1.08994 * 109.47427 * 30.00622 * 5 4 3 31 31 H 1.09000 * 109.47077 * 150.00127 * 5 4 3 32 32 H 0.97005 * 120.00345 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04558 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.95234 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46979 * 300.00175 * 21 20 19 36 36 H 1.08999 * 109.47026 * 60.00334 * 21 20 19 37 37 H 1.08999 * 109.47120 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46959 * 299.99910 * 22 21 20 39 39 H 1.08999 * 109.46973 * 60.00024 * 22 21 20 40 40 H 1.08003 * 119.95590 * 179.72622 * 23 19 18 41 41 H 1.07997 * 120.04201 * 180.23393 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5129 1.6952 2.4667 6 6 2.6350 3.1852 2.6564 7 1 3.0308 3.8000 1.8616 8 6 2.2404 3.7635 3.8441 9 7 2.3465 5.0639 4.0095 10 14 1.5551 2.7001 5.2185 11 1 2.6653 2.2477 6.0949 12 1 0.5837 3.4893 6.0178 13 1 0.8714 1.5177 4.6355 14 6 4.2920 1.0222 0.9439 15 8 5.0400 0.9341 1.8983 16 6 4.8058 0.7901 -0.4203 17 6 6.1386 1.0784 -0.7254 18 6 6.6138 0.8609 -1.9994 19 6 5.7699 0.3550 -2.9811 20 8 6.2419 0.1426 -4.2355 21 6 5.3208 -0.3784 -5.1958 22 6 6.0291 -0.5504 -6.5410 23 6 4.4422 0.0716 -2.6828 24 6 3.9606 0.2812 -1.4099 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6213 1.4027 -0.9314 30 1 1.4687 1.4001 2.5696 31 1 3.1111 1.1828 3.2202 32 1 2.0685 5.4708 4.8451 33 1 6.7948 1.4719 0.0367 34 1 7.6438 1.0839 -2.2361 35 1 4.9488 -1.3448 -4.8553 36 1 4.4856 0.3126 -5.3103 37 1 5.3263 -0.9474 -7.2735 38 1 6.4013 0.4158 -6.8817 39 1 6.8640 -1.2416 -6.4262 40 1 3.7884 -0.3173 -3.4495 41 1 2.9299 0.0571 -1.1780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292439989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = -17.160565 kcal Electronic energy + Delta-G solvation = -22670.392995 eV Core-core repulsion = 19323.804375 eV Total energy + Delta-G solvation = -3346.588620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73739 -40.55638 -38.17912 -37.54564 -35.14735 -33.83433 -33.03753 -32.05693 -31.32404 -29.63458 -27.28147 -25.51395 -24.61364 -23.60585 -22.55916 -21.39904 -20.28042 -19.29839 -19.10831 -18.31401 -17.69179 -17.05487 -16.71962 -16.37516 -16.09948 -16.05642 -15.29656 -15.10173 -14.70801 -14.50523 -14.38374 -14.26395 -14.09894 -13.67968 -13.43198 -13.22736 -13.04217 -13.01265 -12.76427 -12.54003 -12.41588 -12.30612 -11.97418 -11.76941 -11.65626 -11.53681 -10.85718 -10.79421 -10.46029 -10.01381 -9.56277 -9.21367 -8.36075 -6.41824 -0.05826 0.26836 1.24381 1.31743 1.35676 1.44266 1.81534 2.17166 2.29309 2.31610 2.79209 2.98015 3.59189 3.72560 3.84226 4.00511 4.11362 4.11507 4.18276 4.23157 4.34598 4.37313 4.42610 4.51842 4.72607 4.81583 4.85152 4.89975 4.94793 4.99085 5.05216 5.08819 5.17601 5.30418 5.36458 5.42204 5.48337 5.62015 5.67130 5.87109 6.21319 6.37803 6.58346 6.59817 7.16529 7.31330 8.80870 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.003908 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.908787 B = 7162.349231 C = 7811.175334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.198 4.198 3 C 0.102 3.898 4 N -0.587 5.587 5 C 0.228 3.772 6 C -0.540 4.540 7 H 0.028 0.972 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.238 1.238 14 C 0.545 3.455 15 O -0.594 6.594 16 C -0.187 4.187 17 C -0.039 4.039 18 C -0.163 4.163 19 C 0.152 3.848 20 O -0.324 6.324 21 C 0.039 3.961 22 C -0.150 4.150 23 C -0.208 4.208 24 C -0.071 4.071 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.051 0.949 31 H 0.019 0.981 32 H 0.270 0.730 33 H 0.123 0.877 34 H 0.151 0.849 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.169 0.831 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -15.180 -21.628 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.217 4.217 3 C -0.019 4.019 4 N -0.316 5.316 5 C 0.106 3.894 6 C -0.578 4.578 7 H 0.047 0.953 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.197 1.197 13 H -0.161 1.161 14 C 0.336 3.664 15 O -0.477 6.477 16 C -0.190 4.190 17 C -0.058 4.058 18 C -0.181 4.181 19 C 0.106 3.894 20 O -0.238 6.238 21 C -0.035 4.035 22 C -0.207 4.207 23 C -0.226 4.226 24 C -0.089 4.089 25 H 0.119 0.881 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.187 0.813 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.265 -15.035 -21.109 25.918 hybrid contribution -0.065 0.440 1.247 1.324 sum -0.330 -14.594 -19.863 24.650 Atomic orbital electron populations 1.24154 0.95133 1.03398 0.95955 1.23186 0.96937 0.97674 1.03906 1.21689 0.92970 0.96956 0.90315 1.47816 1.07932 1.65347 1.10478 1.19311 0.95186 0.93687 0.81244 1.21538 1.42764 0.92416 1.01105 0.95342 1.25827 0.95438 0.96277 1.00899 1.70043 1.49155 1.11938 1.27188 0.85729 0.78861 0.79653 0.78830 1.20175 1.19668 1.16137 1.18855 0.81925 0.76321 0.89345 1.90684 1.57671 1.54743 1.44578 1.19829 0.96264 1.09641 0.93256 1.21019 0.93586 0.94861 0.96300 1.20461 1.01355 1.05402 0.90927 1.19306 0.92531 0.92926 0.84669 1.86042 1.41185 1.79232 1.17294 1.23208 0.92601 0.99470 0.88244 1.21816 1.02017 1.03077 0.93812 1.21504 0.95006 1.07666 0.98408 1.22309 1.00906 0.93937 0.91714 0.88055 0.85665 0.86054 0.90710 0.86023 0.93129 0.96256 0.92145 0.85856 0.83172 0.90366 0.90486 0.88031 0.91983 0.91864 0.81341 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 14.32 67.79 0.97 -2.05 16 2 C -0.20 -4.84 8.22 25.65 0.21 -4.63 16 3 C 0.10 3.26 5.33 85.63 0.46 3.72 16 4 N -0.59 -25.61 2.45 -834.18 -2.04 -27.65 16 5 C 0.23 11.59 4.28 85.63 0.37 11.95 16 6 C -0.54 -32.70 9.94 25.60 0.25 -32.45 16 7 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 8 C 0.01 0.83 5.47 84.66 0.46 1.30 16 9 N -0.94 -60.45 13.96 21.45 0.30 -60.15 16 10 Si 0.95 45.22 27.47 68.60 1.88 47.10 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 14 C 0.54 24.73 7.45 86.72 0.65 25.37 16 15 O -0.59 -32.33 16.25 -3.97 -0.06 -32.39 16 16 C -0.19 -6.56 5.59 -20.08 -0.11 -6.67 16 17 C -0.04 -1.27 9.59 22.51 0.22 -1.05 16 18 C -0.16 -4.27 9.97 22.32 0.22 -4.05 16 19 C 0.15 3.49 6.70 22.63 0.15 3.64 16 20 O -0.32 -6.38 10.12 -90.27 -0.91 -7.29 16 21 C 0.04 0.45 5.45 71.98 0.39 0.85 16 22 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 23 C -0.21 -4.25 9.01 22.33 0.20 -4.04 16 24 C -0.07 -1.84 7.47 22.50 0.17 -1.67 16 25 H 0.10 2.08 7.84 -2.91 -0.02 2.06 16 26 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 27 H 0.12 2.71 7.58 -2.91 -0.02 2.69 16 28 H 0.07 2.54 7.78 -2.39 -0.02 2.52 16 29 H 0.12 3.40 4.06 -2.45 -0.01 3.39 16 30 H 0.05 2.36 7.13 -2.39 -0.02 2.35 16 31 H 0.02 1.06 6.77 -2.39 -0.02 1.04 16 32 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 33 H 0.12 4.32 7.91 -2.91 -0.02 4.30 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 35 H 0.08 0.71 7.66 -2.39 -0.02 0.69 16 36 H 0.08 0.73 7.64 -2.39 -0.02 0.71 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.17 2.12 6.28 -2.91 -0.02 2.11 16 41 H 0.18 3.97 2.81 -2.91 -0.01 3.96 16 Total: -1.00 -80.36 340.46 5.48 -74.87 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.97 Total: 15.82 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.35 Total: -10.32 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.74 Total: -87.80 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.98 Total: -39.68 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -80.36 5.48 -74.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292439989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.713 kcal (2) G-P(sol) polarization free energy of solvation -80.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds