Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 119.99999 * 2 1 4 4 N 1.46497 * 109.47499 * 125.00004 * 3 2 1 5 5 C 1.46493 * 120.00229 * 270.00331 * 4 3 2 6 6 C 1.50709 * 109.46985 * 269.99790 * 5 4 3 7 7 H 1.07997 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99868 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00207 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47203 * 59.99725 * 10 8 6 12 12 H 1.48504 * 109.47445 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47144 * 299.99880 * 10 8 6 14 14 C 1.34783 * 119.99990 * 89.99706 * 4 3 2 15 15 O 1.21276 * 119.99950 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00062 * 0.02562 * 14 4 3 17 17 C 1.50694 * 109.47497 * 179.97438 * 16 14 4 18 18 C 1.38169 * 120.02852 * 265.00833 * 17 16 14 19 19 C 1.38242 * 120.05494 * 180.02562 * 18 17 16 20 20 C 1.38295 * 120.11401 * 359.94904 * 19 18 17 21 21 C 1.38122 * 120.05026 * 0.02562 * 20 19 18 22 22 C 1.38711 * 120.02640 * 85.01965 * 17 16 14 23 23 O 1.35897 * 120.05656 * 359.96228 * 22 17 16 24 24 C 1.42904 * 116.99817 * 179.97438 * 23 22 17 25 25 H 1.07997 * 120.00314 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00319 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99669 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47435 * 4.99310 * 3 2 1 29 29 H 1.09007 * 109.46898 * 244.99852 * 3 2 1 30 30 H 1.09005 * 109.46957 * 29.99183 * 5 4 3 31 31 H 1.09001 * 109.47783 * 149.99450 * 5 4 3 32 32 H 0.96996 * 120.00100 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46745 * 59.99981 * 16 14 4 34 34 H 1.09006 * 109.47291 * 300.00367 * 16 14 4 35 35 H 1.07998 * 119.97347 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.94707 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.97026 * 179.74858 * 20 19 18 38 38 H 1.08002 * 120.02294 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47023 * 60.00240 * 24 23 22 40 40 H 1.09002 * 109.46809 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.47655 * 300.00222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3039 3.8369 1.6367 8 6 2.5184 4.0668 3.6081 9 7 1.9581 3.4662 4.6352 10 14 2.8728 5.8995 3.6772 11 1 2.1379 6.5873 2.5853 12 1 2.4308 6.4402 4.9878 13 1 4.3309 6.1283 3.5132 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8880 1.9191 16 6 4.6972 0.3183 -0.3483 17 6 6.1317 -0.1325 -0.2492 18 6 7.1518 0.7187 -0.6288 19 6 8.4679 0.3055 -0.5386 20 6 8.7673 -0.9598 -0.0675 21 6 7.7512 -1.8142 0.3137 22 6 6.4292 -1.4024 0.2230 23 8 5.4278 -2.2412 0.5975 24 6 5.8082 -3.5339 1.0735 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6213 1.4025 -0.9314 30 1 1.4887 1.6966 2.5458 31 1 3.0989 1.3603 3.2259 32 1 1.7293 3.9748 5.4288 33 1 4.6125 1.0952 -1.1081 34 1 4.0680 -0.5285 -0.6228 35 1 6.9207 1.7076 -0.9963 36 1 9.2638 0.9721 -0.8362 37 1 9.7961 -1.2816 -0.0018 38 1 7.9854 -2.8024 0.6812 39 1 6.4432 -3.4249 1.9527 40 1 4.9156 -4.1006 1.3384 41 1 6.3559 -4.0618 0.2930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292517629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -25.091981 kcal Electronic energy + Delta-G solvation = -23035.997678 eV Core-core repulsion = 19689.065126 eV Total energy + Delta-G solvation = -3346.932552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23751 -38.75861 -37.22125 -35.53173 -33.24389 -32.55753 -31.94889 -30.00722 -28.46169 -27.31520 -26.54040 -25.25094 -22.90094 -22.01382 -21.31486 -19.86516 -18.37856 -17.79076 -16.49283 -16.23773 -16.20461 -15.79374 -15.50658 -15.12305 -14.61639 -14.38253 -14.28921 -13.94096 -13.60153 -12.94499 -12.85669 -12.74258 -12.30272 -12.15031 -11.95704 -11.67185 -11.57011 -11.30420 -11.13210 -11.03975 -10.87887 -10.85818 -10.71580 -10.50244 -10.13384 -9.59111 -9.11711 -8.96307 -8.58614 -8.37760 -7.97071 -7.57917 -5.98592 -4.03120 1.45566 1.60278 2.52403 3.34874 3.38252 3.39204 3.41983 3.58988 3.82794 4.24235 4.50566 4.81991 4.90436 5.06075 5.13353 5.16569 5.20972 5.34729 5.37745 5.40791 5.46170 5.49538 5.53160 5.65907 5.69486 5.82585 5.88591 6.07635 6.16544 6.27012 6.42947 6.54869 6.67226 6.86877 6.91416 6.99071 7.17969 7.50743 7.53949 7.65021 7.98546 8.30508 8.52500 8.97147 9.22494 9.61743 11.09454 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.005023 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.420445 B = 5573.147261 C = 6602.405488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.136 3.864 4 N -0.596 5.596 5 C 0.249 3.751 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.512 3.488 15 O -0.533 6.533 16 C -0.097 4.097 17 C -0.086 4.086 18 C -0.071 4.071 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.211 4.211 22 C 0.142 3.858 23 O -0.311 6.311 24 C 0.029 3.971 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 -11.855 -13.370 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.185 4.185 3 C 0.012 3.988 4 N -0.328 5.328 5 C 0.130 3.870 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.298 3.702 15 O -0.409 6.409 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.089 4.089 19 C -0.176 4.176 20 C -0.105 4.105 21 C -0.229 4.229 22 C 0.097 3.903 23 O -0.224 6.224 24 C -0.066 4.066 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.304 -11.764 -12.644 18.384 hybrid contribution 0.286 0.791 0.279 0.886 sum 6.590 -10.973 -12.365 17.797 Atomic orbital electron populations 1.23792 0.95854 1.01639 1.01074 1.23463 0.96368 0.99202 0.99437 1.20570 0.93138 0.95230 0.89832 1.48195 1.10479 1.60656 1.13460 1.19227 0.95251 0.93607 0.78948 1.21416 1.40328 0.93415 1.01188 0.92556 1.24928 0.95134 0.98664 0.95368 1.69928 1.42133 1.36196 1.05193 0.86581 0.78803 0.85047 0.77106 1.20274 1.21218 1.20215 1.20151 0.82229 0.78407 0.89366 1.90670 1.52562 1.55830 1.41862 1.20602 0.93459 1.01990 0.97631 1.18749 0.95325 0.91664 1.02933 1.20865 0.91968 0.98340 0.97691 1.20958 0.96298 0.96689 1.03632 1.20842 0.98390 0.93806 0.97509 1.21124 0.91981 1.01503 1.08318 1.18764 0.86935 0.90167 0.94483 1.86092 1.32379 1.25238 1.78685 1.23013 1.02409 0.82544 0.98628 0.88366 0.88894 0.87685 0.89575 0.90829 0.95117 0.94036 0.92745 0.88794 0.88446 0.85500 0.86101 0.86193 0.85797 0.92699 0.88432 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 14.32 29.02 0.42 -2.09 16 2 C -0.17 -2.46 9.74 -36.03 -0.35 -2.81 16 3 C 0.14 2.29 5.65 -5.20 -0.03 2.26 16 4 N -0.60 -13.07 2.44 -176.44 -0.43 -13.50 16 5 C 0.25 6.72 5.16 -5.19 -0.03 6.69 16 6 C -0.52 -15.17 9.39 -34.44 -0.32 -15.50 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 10 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.51 11.18 7.66 -10.98 -0.08 11.10 16 15 O -0.53 -14.15 15.61 5.56 0.09 -14.07 16 16 C -0.10 -1.58 4.10 -29.04 -0.12 -1.70 16 17 C -0.09 -1.41 4.39 -104.48 -0.46 -1.87 16 18 C -0.07 -1.05 9.68 -39.61 -0.38 -1.43 16 19 C -0.16 -2.06 10.04 -39.56 -0.40 -2.46 16 20 C -0.09 -1.09 10.04 -39.60 -0.40 -1.49 16 21 C -0.21 -2.84 9.04 -39.43 -0.36 -3.20 16 22 C 0.14 2.25 6.66 -39.22 -0.26 1.99 16 23 O -0.31 -4.79 9.63 -19.42 -0.19 -4.98 16 24 C 0.03 0.31 9.81 101.05 0.99 1.30 16 25 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 26 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.11 1.51 7.83 -52.48 -0.41 1.10 16 28 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 29 H 0.07 1.02 6.44 -51.92 -0.33 0.68 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.09 1.29 7.31 -51.93 -0.38 0.91 16 34 H 0.10 1.43 7.33 -51.93 -0.38 1.05 16 35 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.35 6.30 -52.49 -0.33 1.02 16 39 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -35.37 351.06 -7.31 -42.68 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.91 Total: 1.31 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.88 Total: -7.51 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.31 Total: -39.92 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.10 Total: -19.05 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.37 -7.31 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292517629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.590 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds