Wall clock time and date at job start Tue Mar 31 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 119.99999 * 2 1 4 4 N 1.46497 * 109.47499 * 125.00004 * 3 2 1 5 5 C 1.46493 * 120.00229 * 270.00331 * 4 3 2 6 6 C 1.50709 * 109.46985 * 269.99790 * 5 4 3 7 7 H 1.07997 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99868 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00207 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47203 * 59.99725 * 10 8 6 12 12 H 1.48504 * 109.47445 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47144 * 299.99880 * 10 8 6 14 14 C 1.34783 * 119.99990 * 89.99706 * 4 3 2 15 15 O 1.21276 * 119.99950 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00062 * 0.02562 * 14 4 3 17 17 C 1.50694 * 109.47497 * 179.97438 * 16 14 4 18 18 C 1.38169 * 120.02852 * 265.00833 * 17 16 14 19 19 C 1.38242 * 120.05494 * 180.02562 * 18 17 16 20 20 C 1.38295 * 120.11401 * 359.94904 * 19 18 17 21 21 C 1.38122 * 120.05026 * 0.02562 * 20 19 18 22 22 C 1.38711 * 120.02640 * 85.01965 * 17 16 14 23 23 O 1.35897 * 120.05656 * 359.96228 * 22 17 16 24 24 C 1.42904 * 116.99817 * 179.97438 * 23 22 17 25 25 H 1.07997 * 120.00314 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00319 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99669 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47435 * 4.99310 * 3 2 1 29 29 H 1.09007 * 109.46898 * 244.99852 * 3 2 1 30 30 H 1.09005 * 109.46957 * 29.99183 * 5 4 3 31 31 H 1.09001 * 109.47783 * 149.99450 * 5 4 3 32 32 H 0.96996 * 120.00100 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46745 * 59.99981 * 16 14 4 34 34 H 1.09006 * 109.47291 * 300.00367 * 16 14 4 35 35 H 1.07998 * 119.97347 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.94707 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.97026 * 179.74858 * 20 19 18 38 38 H 1.08002 * 120.02294 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47023 * 60.00240 * 24 23 22 40 40 H 1.09002 * 109.46809 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.47655 * 300.00222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3039 3.8369 1.6367 8 6 2.5184 4.0668 3.6081 9 7 1.9581 3.4662 4.6352 10 14 2.8728 5.8995 3.6772 11 1 2.1379 6.5873 2.5853 12 1 2.4308 6.4402 4.9878 13 1 4.3309 6.1283 3.5132 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8880 1.9191 16 6 4.6972 0.3183 -0.3483 17 6 6.1317 -0.1325 -0.2492 18 6 7.1518 0.7187 -0.6288 19 6 8.4679 0.3055 -0.5386 20 6 8.7673 -0.9598 -0.0675 21 6 7.7512 -1.8142 0.3137 22 6 6.4292 -1.4024 0.2230 23 8 5.4278 -2.2412 0.5975 24 6 5.8082 -3.5339 1.0735 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6213 1.4025 -0.9314 30 1 1.4887 1.6966 2.5458 31 1 3.0989 1.3603 3.2259 32 1 1.7293 3.9748 5.4288 33 1 4.6125 1.0952 -1.1081 34 1 4.0680 -0.5285 -0.6228 35 1 6.9207 1.7076 -0.9963 36 1 9.2638 0.9721 -0.8362 37 1 9.7961 -1.2816 -0.0018 38 1 7.9854 -2.8024 0.6812 39 1 6.4432 -3.4249 1.9527 40 1 4.9156 -4.1006 1.3384 41 1 6.3559 -4.0618 0.2930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292517629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:16 Heat of formation + Delta-G solvation = -46.922721 kcal Electronic energy + Delta-G solvation = -23036.944330 eV Core-core repulsion = 19689.065126 eV Total energy + Delta-G solvation = -3347.879204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40498 -40.31995 -38.26630 -37.14734 -35.16345 -33.81091 -33.62953 -31.03164 -30.12816 -28.51528 -27.81287 -26.81465 -24.81061 -23.03712 -22.57718 -21.12039 -19.90854 -18.87948 -18.62429 -17.84279 -17.40270 -17.19354 -16.54916 -16.52625 -16.11928 -16.00347 -15.45008 -15.30218 -14.73079 -14.41288 -14.24799 -14.11728 -14.00853 -13.36015 -13.30839 -13.06044 -12.96012 -12.83706 -12.79244 -12.57334 -12.27919 -12.20997 -12.11604 -11.97756 -11.71254 -11.67156 -10.64063 -10.63512 -10.30044 -9.75356 -9.42449 -9.04564 -8.21137 -6.36294 0.39077 0.55153 1.34599 1.36672 1.41088 1.48382 1.91391 2.35575 2.42852 2.52194 2.93323 3.08108 3.73298 3.89504 3.90598 4.09795 4.16406 4.26902 4.29167 4.34479 4.37555 4.46448 4.47647 4.56800 4.67605 4.69647 4.84027 4.86433 5.01439 5.06593 5.13355 5.24634 5.41116 5.51836 5.54478 5.62630 5.73142 5.78166 5.92284 5.98563 6.08130 6.49771 6.71284 6.82226 7.29731 7.54140 8.85995 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.005023 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.420445 B = 5573.147261 C = 6602.405488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.601 5.601 5 C 0.267 3.733 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.968 3.032 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.505 3.495 15 O -0.591 6.591 16 C -0.079 4.079 17 C -0.120 4.120 18 C -0.086 4.086 19 C -0.163 4.163 20 C -0.086 4.086 21 C -0.218 4.218 22 C 0.120 3.880 23 O -0.338 6.338 24 C 0.021 3.979 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.019 0.981 31 H -0.009 1.009 32 H 0.267 0.733 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -11.793 -15.239 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.331 5.331 5 C 0.145 3.855 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.792 3.208 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.294 3.706 15 O -0.472 6.472 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.104 4.104 19 C -0.181 4.181 20 C -0.104 4.104 21 C -0.236 4.236 22 C 0.075 3.925 23 O -0.251 6.251 24 C -0.073 4.073 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.037 0.963 31 H 0.009 0.991 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.165 0.835 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.989 -11.720 -14.569 19.961 hybrid contribution 0.056 0.678 0.883 1.115 sum 7.046 -11.041 -13.686 18.944 Atomic orbital electron populations 1.24030 0.95452 1.02841 0.98500 1.23335 0.96829 0.98335 1.01714 1.20833 0.92730 0.96205 0.89164 1.48203 1.11734 1.60198 1.13013 1.18637 0.93555 0.92734 0.80535 1.21688 1.40515 0.94337 1.01486 0.92699 1.25884 0.94630 1.03890 0.94800 1.70059 1.42864 1.38245 1.05810 0.85460 0.78498 0.78859 0.77945 1.18253 1.20344 1.20336 1.21157 0.81323 0.77237 0.90864 1.90624 1.54114 1.58137 1.44279 1.20510 0.94085 1.02936 0.94344 1.18959 0.95472 0.92695 1.04945 1.21141 0.92666 0.98642 0.97933 1.21338 0.96281 0.97472 1.03023 1.21302 0.99827 0.93337 0.95926 1.21480 0.91340 1.02833 1.07954 1.19067 0.88007 0.90441 0.94973 1.86037 1.33286 1.26852 1.78968 1.23283 1.03593 0.81171 0.99292 0.88232 0.86609 0.87141 0.90406 0.87478 0.96348 0.99106 0.92451 0.86043 0.86896 0.84634 0.83500 0.82892 0.83521 0.92907 0.86952 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 14.32 67.78 0.97 -3.35 16 2 C -0.18 -5.27 9.74 25.65 0.25 -5.02 16 3 C 0.13 4.39 5.65 85.63 0.48 4.88 16 4 N -0.60 -27.05 2.44 -830.51 -2.03 -29.07 16 5 C 0.27 15.13 5.16 85.64 0.44 15.57 16 6 C -0.54 -32.20 9.39 25.60 0.24 -31.96 16 7 H 0.05 3.20 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.40 5.46 84.66 0.46 0.86 16 9 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 10 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 C 0.50 22.66 7.66 87.65 0.67 23.34 16 15 O -0.59 -32.96 15.61 -3.02 -0.05 -33.01 16 16 C -0.08 -2.55 4.10 29.10 0.12 -2.43 16 17 C -0.12 -3.90 4.39 -19.77 -0.09 -3.99 16 18 C -0.09 -2.47 9.68 22.25 0.22 -2.26 16 19 C -0.16 -3.96 10.04 22.28 0.22 -3.74 16 20 C -0.09 -1.96 10.04 22.26 0.22 -1.74 16 21 C -0.22 -5.57 9.04 22.37 0.20 -5.36 16 22 C 0.12 3.79 6.66 22.51 0.15 3.94 16 23 O -0.34 -10.41 9.63 -92.39 -0.89 -11.30 16 24 C 0.02 0.43 9.81 113.37 1.11 1.54 16 25 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 26 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.11 3.07 7.83 -2.91 -0.02 3.04 16 28 H 0.08 2.68 7.72 -2.39 -0.02 2.67 16 29 H 0.11 2.77 6.44 -2.38 -0.02 2.76 16 30 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 31 H -0.01 -0.61 7.42 -2.39 -0.02 -0.62 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.12 3.13 7.31 -2.38 -0.02 3.11 16 34 H 0.11 3.23 7.33 -2.38 -0.02 3.22 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.15 2.90 6.30 -2.91 -0.02 2.88 16 39 H 0.05 1.08 7.66 -2.39 -0.02 1.06 16 40 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 Total: -1.00 -80.52 351.06 6.04 -74.49 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.01 Total: 18.35 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.68 Total: -9.72 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.74 Total: -86.64 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.94 Total: -44.31 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -80.52 6.04 -74.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292517629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.562 kcal (2) G-P(sol) polarization free energy of solvation -80.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds