Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99530 * 2 1 4 4 N 1.46505 * 109.47045 * 125.00012 * 3 2 1 5 5 C 1.46496 * 119.99896 * 269.99656 * 4 3 2 6 6 C 1.50699 * 109.47398 * 270.00022 * 5 4 3 7 7 H 1.08003 * 120.00015 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00473 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99797 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47398 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47236 * 120.00416 * 10 8 6 13 13 H 1.48507 * 109.47103 * 240.00011 * 10 8 6 14 14 C 1.34777 * 119.99832 * 90.00120 * 4 3 2 15 15 O 1.21278 * 119.99854 * 180.02562 * 14 4 3 16 16 C 1.50703 * 120.00161 * 359.97438 * 14 4 3 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 4 18 18 C 1.38261 * 119.94585 * 269.72747 * 17 16 14 19 19 C 1.38144 * 120.05633 * 179.72540 * 18 17 16 20 20 C 1.38731 * 119.94438 * 0.57065 * 19 18 17 21 21 O 1.35900 * 120.05838 * 179.68362 * 20 19 18 22 22 C 1.42894 * 117.00086 * 0.02562 * 21 20 19 23 23 C 1.38740 * 119.88450 * 359.70338 * 20 19 18 24 24 C 1.38139 * 119.94681 * 0.02562 * 23 20 19 25 25 H 1.08002 * 119.99487 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00085 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00484 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47617 * 4.99876 * 3 2 1 29 29 H 1.09000 * 109.47073 * 244.99633 * 3 2 1 30 30 H 1.09000 * 109.47082 * 30.00019 * 5 4 3 31 31 H 1.09004 * 109.46754 * 150.00286 * 5 4 3 32 32 H 0.96999 * 120.00725 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 4 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 4 35 35 H 1.07999 * 119.97190 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.03140 * 180.25189 * 19 18 17 37 37 H 1.08993 * 109.47158 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47106 * 300.00137 * 22 21 20 39 39 H 1.09000 * 109.47348 * 59.99680 * 22 21 20 40 40 H 1.07998 * 120.02343 * 179.97438 * 23 20 19 41 41 H 1.07999 * 119.97195 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4804 7 1 3.3031 3.8373 1.6365 8 6 2.5191 4.0666 3.6086 9 7 1.9606 3.4657 4.6364 10 14 2.8722 5.8997 3.6771 11 1 3.5000 6.3309 2.4024 12 1 1.6016 6.6413 3.8794 13 1 3.7961 6.1841 4.8044 14 6 4.2497 0.8664 0.9824 15 8 5.0196 0.8882 1.9192 16 6 4.6969 0.3176 -0.3480 17 6 6.1312 -0.1340 -0.2485 18 6 7.1547 0.7502 -0.5359 19 6 8.4704 0.3403 -0.4399 20 6 8.7642 -0.9631 -0.0664 21 8 10.0576 -1.3706 0.0225 22 6 11.0648 -0.4039 -0.2825 23 6 7.7353 -1.8499 0.2159 24 6 6.4214 -1.4335 0.1239 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4887 1.6967 2.5459 31 1 3.0989 1.3605 3.2259 32 1 1.7323 3.9742 5.4303 33 1 4.6120 1.0940 -1.1084 34 1 4.0678 -0.5294 -0.6217 35 1 6.9254 1.7632 -0.8316 36 1 9.2696 1.0324 -0.6605 37 1 12.0495 -0.8583 -0.1733 38 1 10.9368 -0.0569 -1.3078 39 1 10.9763 0.4409 0.4006 40 1 7.9614 -2.8652 0.5065 41 1 5.6201 -2.1234 0.3440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292539686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = -27.068931 kcal Electronic energy + Delta-G solvation = -22414.332931 eV Core-core repulsion = 19067.314652 eV Total energy + Delta-G solvation = -3347.018279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15078 -39.07929 -37.34952 -35.57758 -33.22893 -32.15539 -31.85065 -30.95302 -28.43281 -27.49255 -26.18640 -25.26548 -22.86234 -22.52178 -21.11999 -19.92371 -18.38485 -18.07247 -16.54487 -16.25655 -16.24289 -15.81153 -15.74436 -14.93643 -14.72379 -14.41081 -14.29732 -13.79541 -13.66676 -13.38798 -12.93359 -12.80346 -12.35708 -12.28890 -12.04639 -11.66132 -11.57673 -11.47228 -11.18049 -10.99377 -10.98287 -10.85281 -10.70138 -10.58376 -10.17496 -9.60535 -9.18139 -8.91135 -8.85399 -8.42317 -7.95289 -7.65193 -6.02772 -4.07396 1.48470 1.53874 2.45631 3.25566 3.29947 3.37284 3.40388 3.48380 3.78569 4.18674 4.46748 4.81594 4.92242 4.98038 5.01741 5.04743 5.13033 5.30030 5.32304 5.33361 5.40049 5.44402 5.49560 5.59761 5.66644 5.79143 5.83468 6.01930 6.14925 6.20140 6.35559 6.45164 6.77699 6.79796 6.84497 6.92300 7.12053 7.42274 7.48184 7.58308 7.94054 8.25669 8.44674 8.92736 9.13956 9.57724 11.05347 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.004259 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.653259 B = 6572.958831 C = 8002.008076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.531 6.531 16 C -0.101 4.101 17 C -0.089 4.089 18 C -0.065 4.065 19 C -0.205 4.205 20 C 0.117 3.883 21 O -0.321 6.321 22 C 0.028 3.972 23 C -0.150 4.150 24 C -0.067 4.067 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.127 0.873 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -8.781 -14.495 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.408 6.408 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.083 4.083 19 C -0.224 4.224 20 C 0.073 3.927 21 O -0.235 6.235 22 C -0.067 4.067 23 C -0.169 4.169 24 C -0.085 4.085 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.292 -8.894 -13.729 18.340 hybrid contribution 0.105 1.350 0.129 1.360 sum 8.396 -7.544 -13.600 17.674 Atomic orbital electron populations 1.23815 0.95872 1.01736 1.00682 1.23437 0.96395 0.99072 0.99813 1.20583 0.93161 0.95276 0.89806 1.48236 1.10487 1.60486 1.13524 1.19255 0.95314 0.93711 0.78881 1.21478 1.40325 0.93386 1.01197 0.92449 1.24931 0.95110 0.98702 0.95365 1.69942 1.42222 1.36036 1.05137 0.86464 0.77892 0.85081 0.78107 1.19833 1.20975 1.20907 1.20248 0.82288 0.78799 0.89469 1.90695 1.52432 1.55796 1.41836 1.20737 0.93695 1.02138 0.97574 1.19287 0.94235 0.93911 1.01555 1.20780 0.91580 0.98845 0.97137 1.21128 0.97756 0.95354 1.08137 1.18984 0.83588 0.93061 0.97109 1.86033 1.12973 1.39651 1.84849 1.23010 0.90340 0.92953 1.00392 1.20314 0.90792 0.99687 1.06091 1.20772 0.95488 0.95535 0.96741 0.88820 0.88308 0.87793 0.89524 0.90757 0.95052 0.93952 0.92806 0.88694 0.88763 0.85914 0.85734 0.88526 0.92826 0.92618 0.85464 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.32 9.74 -36.02 -0.35 -2.67 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.60 -12.48 2.44 -176.43 -0.43 -12.91 16 5 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 6 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 C 0.51 10.43 7.66 -10.98 -0.08 10.35 16 15 O -0.53 -13.55 15.61 5.56 0.09 -13.47 16 16 C -0.10 -1.49 4.38 -29.03 -0.13 -1.62 16 17 C -0.09 -1.36 4.37 -104.60 -0.46 -1.82 16 18 C -0.07 -0.96 9.69 -39.61 -0.38 -1.35 16 19 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 20 C 0.12 1.66 6.69 -39.21 -0.26 1.39 16 21 O -0.32 -4.12 10.50 -19.43 -0.20 -4.33 16 22 C 0.03 0.25 9.81 101.05 0.99 1.24 16 23 C -0.15 -2.10 9.99 -39.43 -0.39 -2.49 16 24 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 25 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 26 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 27 H 0.10 1.33 7.83 -52.49 -0.41 0.92 16 28 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 29 H 0.07 0.96 6.44 -51.93 -0.33 0.62 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.09 1.19 7.34 -51.93 -0.38 0.81 16 34 H 0.09 1.14 7.71 -51.93 -0.40 0.74 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -34.70 352.24 -7.32 -42.02 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.93 Total: 0.88 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.87 Total: -8.39 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.31 Total: -38.96 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.12 Total: -17.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.70 -7.32 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292539686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.950 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds