Wall clock time and date at job start Tue Mar 31 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99530 * 2 1 4 4 N 1.46505 * 109.47045 * 125.00012 * 3 2 1 5 5 C 1.46496 * 119.99896 * 269.99656 * 4 3 2 6 6 C 1.50699 * 109.47398 * 270.00022 * 5 4 3 7 7 H 1.08003 * 120.00015 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00473 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99797 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47398 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47236 * 120.00416 * 10 8 6 13 13 H 1.48507 * 109.47103 * 240.00011 * 10 8 6 14 14 C 1.34777 * 119.99832 * 90.00120 * 4 3 2 15 15 O 1.21278 * 119.99854 * 180.02562 * 14 4 3 16 16 C 1.50703 * 120.00161 * 359.97438 * 14 4 3 17 17 C 1.50701 * 109.47064 * 180.02562 * 16 14 4 18 18 C 1.38261 * 119.94585 * 269.72747 * 17 16 14 19 19 C 1.38144 * 120.05633 * 179.72540 * 18 17 16 20 20 C 1.38731 * 119.94438 * 0.57065 * 19 18 17 21 21 O 1.35900 * 120.05838 * 179.68362 * 20 19 18 22 22 C 1.42894 * 117.00086 * 0.02562 * 21 20 19 23 23 C 1.38740 * 119.88450 * 359.70338 * 20 19 18 24 24 C 1.38139 * 119.94681 * 0.02562 * 23 20 19 25 25 H 1.08002 * 119.99487 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00085 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00484 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47617 * 4.99876 * 3 2 1 29 29 H 1.09000 * 109.47073 * 244.99633 * 3 2 1 30 30 H 1.09000 * 109.47082 * 30.00019 * 5 4 3 31 31 H 1.09004 * 109.46754 * 150.00286 * 5 4 3 32 32 H 0.96999 * 120.00725 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47152 * 60.00245 * 16 14 4 34 34 H 1.09001 * 109.46980 * 300.00345 * 16 14 4 35 35 H 1.07999 * 119.97190 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.03140 * 180.25189 * 19 18 17 37 37 H 1.08993 * 109.47158 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47106 * 300.00137 * 22 21 20 39 39 H 1.09000 * 109.47348 * 59.99680 * 22 21 20 40 40 H 1.07998 * 120.02343 * 179.97438 * 23 20 19 41 41 H 1.07999 * 119.97195 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4804 7 1 3.3031 3.8373 1.6365 8 6 2.5191 4.0666 3.6086 9 7 1.9606 3.4657 4.6364 10 14 2.8722 5.8997 3.6771 11 1 3.5000 6.3309 2.4024 12 1 1.6016 6.6413 3.8794 13 1 3.7961 6.1841 4.8044 14 6 4.2497 0.8664 0.9824 15 8 5.0196 0.8882 1.9192 16 6 4.6969 0.3176 -0.3480 17 6 6.1312 -0.1340 -0.2485 18 6 7.1547 0.7502 -0.5359 19 6 8.4704 0.3403 -0.4399 20 6 8.7642 -0.9631 -0.0664 21 8 10.0576 -1.3706 0.0225 22 6 11.0648 -0.4039 -0.2825 23 6 7.7353 -1.8499 0.2159 24 6 6.4214 -1.4335 0.1239 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4887 1.6967 2.5459 31 1 3.0989 1.3605 3.2259 32 1 1.7323 3.9742 5.4303 33 1 4.6120 1.0940 -1.1084 34 1 4.0678 -0.5294 -0.6217 35 1 6.9254 1.7632 -0.8316 36 1 9.2696 1.0324 -0.6605 37 1 12.0495 -0.8583 -0.1733 38 1 10.9368 -0.0569 -1.3078 39 1 10.9763 0.4409 0.4006 40 1 7.9614 -2.8652 0.5065 41 1 5.6201 -2.1234 0.3440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292539686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:19 Heat of formation + Delta-G solvation = -48.170046 kcal Electronic energy + Delta-G solvation = -22415.247944 eV Core-core repulsion = 19067.314652 eV Total energy + Delta-G solvation = -3347.933292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26081 -40.51082 -38.42781 -37.10674 -35.13684 -33.62600 -33.16706 -31.99586 -29.97982 -28.67808 -27.35153 -26.77052 -24.70021 -23.59324 -22.31541 -21.08001 -19.85489 -19.06917 -18.62786 -17.80007 -17.39703 -17.20656 -16.61330 -16.44428 -16.14198 -15.86694 -15.50672 -15.06007 -14.75954 -14.46053 -14.40542 -14.18856 -14.10828 -13.42326 -13.34843 -13.00763 -12.94022 -12.82258 -12.69235 -12.61111 -12.39410 -12.22304 -12.13430 -11.91431 -11.69696 -11.63203 -10.64891 -10.58393 -10.27535 -9.91629 -9.42112 -9.02689 -8.21647 -6.36422 0.42507 0.44606 1.35399 1.37479 1.38368 1.50057 1.90311 2.34982 2.39310 2.51127 2.90134 3.07986 3.78616 3.84644 3.93007 3.98570 4.15735 4.24361 4.31085 4.38705 4.40159 4.44438 4.51691 4.59112 4.68418 4.74757 4.79592 4.89502 5.04028 5.09467 5.10917 5.24989 5.31699 5.39489 5.54859 5.68937 5.75051 5.79129 5.83335 6.00099 6.08196 6.46153 6.71941 6.83340 7.29968 7.54388 8.85637 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.004259 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.653259 B = 6572.958831 C = 8002.008076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 C 0.132 3.868 4 N -0.600 5.600 5 C 0.265 3.735 6 C -0.541 4.541 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.265 1.265 12 H -0.269 1.269 13 H -0.283 1.283 14 C 0.499 3.501 15 O -0.591 6.591 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.080 4.080 19 C -0.211 4.211 20 C 0.109 3.891 21 O -0.335 6.335 22 C 0.018 3.982 23 C -0.164 4.164 24 C -0.076 4.076 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.019 0.981 31 H -0.007 1.007 32 H 0.266 0.734 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.141 0.859 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -8.499 -16.559 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C 0.010 3.990 4 N -0.331 5.331 5 C 0.144 3.856 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.791 3.209 11 H -0.189 1.189 12 H -0.194 1.194 13 H -0.209 1.209 14 C 0.288 3.712 15 O -0.472 6.472 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.229 4.229 20 C 0.064 3.936 21 O -0.249 6.249 22 C -0.076 4.076 23 C -0.182 4.182 24 C -0.094 4.094 25 H 0.134 0.866 26 H 0.115 0.885 27 H 0.136 0.864 28 H 0.093 0.907 29 H 0.129 0.871 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.159 0.841 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.601 -8.622 -15.851 19.990 hybrid contribution 0.033 1.213 0.781 1.443 sum 8.634 -7.409 -15.070 18.883 Atomic orbital electron populations 1.24038 0.95683 1.02743 0.98666 1.23369 0.96744 0.98464 1.01548 1.20853 0.92739 0.96222 0.89211 1.48228 1.11830 1.60061 1.12965 1.18649 0.93647 0.92658 0.80691 1.21760 1.40322 0.94482 1.01351 0.92704 1.25863 0.94715 1.03745 0.94889 1.70064 1.43044 1.38044 1.05779 0.85378 0.78193 0.79108 0.78189 1.18933 1.19399 1.20944 1.21307 0.81261 0.77589 0.91057 1.90659 1.53974 1.58156 1.44391 1.20696 0.93896 1.03744 0.94015 1.19461 0.94554 0.94481 1.02656 1.21030 0.92109 0.99266 0.97403 1.21385 0.98090 0.95726 1.07739 1.19195 0.84345 0.93283 0.96748 1.86019 1.12919 1.41139 1.84814 1.23320 0.90322 0.92729 1.01209 1.20590 0.90922 1.00559 1.06145 1.21022 0.96186 0.95745 0.96409 0.86642 0.88531 0.86407 0.90737 0.87121 0.96306 0.98861 0.92486 0.85989 0.85552 0.85135 0.83622 0.86063 0.91426 0.92600 0.84137 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 14.32 67.78 0.97 -3.09 16 2 C -0.18 -4.68 9.74 25.65 0.25 -4.43 16 3 C 0.13 4.00 5.65 85.63 0.48 4.48 16 4 N -0.60 -25.31 2.44 -830.50 -2.03 -27.34 16 5 C 0.27 14.51 5.16 85.63 0.44 14.95 16 6 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 10 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.50 20.60 7.66 87.66 0.67 21.28 16 15 O -0.59 -31.21 15.61 -3.02 -0.05 -31.26 16 16 C -0.08 -2.31 4.38 29.10 0.13 -2.18 16 17 C -0.11 -3.26 4.37 -19.85 -0.09 -3.35 16 18 C -0.08 -2.28 9.69 22.25 0.22 -2.06 16 19 C -0.21 -5.54 9.04 22.37 0.20 -5.34 16 20 C 0.11 3.00 6.69 22.51 0.15 3.15 16 21 O -0.33 -8.19 10.50 -92.42 -0.97 -9.16 16 22 C 0.02 0.29 9.81 113.37 1.11 1.40 16 23 C -0.16 -4.47 9.99 22.37 0.22 -4.25 16 24 C -0.08 -2.11 9.69 22.25 0.22 -1.89 16 25 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 26 H 0.10 2.29 7.84 -2.91 -0.02 2.27 16 27 H 0.12 2.71 7.83 -2.91 -0.02 2.69 16 28 H 0.07 2.43 7.72 -2.39 -0.02 2.41 16 29 H 0.11 2.51 6.44 -2.39 -0.02 2.50 16 30 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 31 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.12 2.68 7.34 -2.39 -0.02 2.66 16 34 H 0.13 2.64 7.71 -2.39 -0.02 2.62 16 35 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.15 3.03 6.30 -2.91 -0.02 3.01 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 39 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 41 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -78.36 352.24 5.96 -72.40 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.01 Total: 16.49 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.68 Total: -11.70 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.74 Total: -84.06 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.02 Total: -40.42 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.36 5.96 -72.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292539686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.233 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds