Wall clock time and date at job start Tue Mar 31 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99937 * 2 1 4 4 O 1.42905 * 109.46972 * 134.99822 * 3 2 1 5 5 C 1.35905 * 116.99842 * 179.97438 * 4 3 2 6 6 C 1.38729 * 120.05486 * 359.72976 * 5 4 3 7 7 C 1.38146 * 119.94131 * 179.74173 * 6 5 4 8 8 C 1.38261 * 120.05612 * 0.50778 * 7 6 5 9 9 C 1.50703 * 119.94555 * 179.74006 * 8 7 6 10 10 C 1.50699 * 109.47329 * 270.02669 * 9 8 7 11 11 O 1.21275 * 120.00324 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99454 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00441 * 0.02562 * 12 10 9 14 14 C 1.46507 * 119.99445 * 179.97438 * 12 10 9 15 15 C 1.50698 * 109.47229 * 90.00325 * 14 12 10 16 16 H 1.08004 * 119.99824 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00272 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99676 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00258 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47452 * 59.99503 * 19 17 15 21 21 H 1.48498 * 109.47206 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46849 * 299.99579 * 19 17 15 23 23 C 1.38262 * 120.11084 * 359.77089 * 8 7 6 24 24 C 1.38145 * 120.05938 * 359.97279 * 23 8 7 25 25 H 1.08001 * 120.00038 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00393 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99849 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47103 * 15.00009 * 3 2 1 29 29 H 1.09000 * 109.47247 * 254.99887 * 3 2 1 30 30 H 1.08000 * 120.03286 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.97222 * 180.23075 * 7 6 5 32 32 H 1.09002 * 109.46995 * 30.02687 * 9 8 7 33 33 H 1.09006 * 109.46988 * 150.02068 * 9 8 7 34 34 H 1.08992 * 109.47864 * 89.99899 * 13 12 10 35 35 H 1.09006 * 109.46837 * 210.00050 * 13 12 10 36 36 H 1.09002 * 109.46659 * 329.99293 * 13 12 10 37 37 H 1.09001 * 109.46687 * 210.00151 * 14 12 10 38 38 H 1.08997 * 109.47357 * 329.99449 * 14 12 10 39 39 H 0.97002 * 120.00044 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.97562 * 180.02562 * 23 8 7 41 41 H 1.07990 * 120.03151 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9097 2.3450 1.0783 6 6 3.6633 3.4642 0.2965 7 6 4.4574 4.5867 0.4298 8 6 5.5034 4.5916 1.3339 9 6 6.3717 5.8154 1.4732 10 6 7.5310 5.7205 0.5150 11 8 7.6417 4.7541 -0.2093 12 7 8.4449 6.7098 0.4630 13 6 8.3117 7.8770 1.3383 14 6 9.5723 6.6172 -0.4681 15 6 9.1896 7.2439 -1.7841 16 1 8.2050 7.6682 -1.9141 17 6 10.0961 7.2745 -2.8225 18 7 11.2949 6.7574 -2.6643 19 14 9.6215 8.0506 -4.4540 20 1 9.2724 9.4781 -4.2402 21 1 10.7642 7.9570 -5.3977 22 1 8.4507 7.3342 -5.0209 23 6 5.7546 3.4753 2.1101 24 6 4.9602 2.3521 1.9844 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 2.8491 3.4594 -0.4130 31 1 4.2637 5.4597 -0.1759 32 1 5.7846 6.7053 1.2460 33 1 6.7483 5.8795 2.4941 34 1 8.8354 7.6900 2.2757 35 1 8.7438 8.7496 0.8485 36 1 7.2565 8.0599 1.5417 37 1 10.4315 7.1429 -0.0515 38 1 9.8286 5.5696 -0.6253 39 1 11.9328 6.7793 -3.3947 40 1 6.5720 3.4816 2.8159 41 1 5.1570 1.4803 2.5905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294350757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:55 Heat of formation + Delta-G solvation = -27.057223 kcal Electronic energy + Delta-G solvation = -21911.685929 eV Core-core repulsion = 18564.668157 eV Total energy + Delta-G solvation = -3347.017771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21051 -39.01082 -37.47286 -34.75250 -34.37482 -32.67781 -31.76416 -30.92849 -28.29208 -27.21513 -26.25915 -25.41569 -22.88081 -22.66423 -21.14569 -20.22423 -18.42204 -18.16309 -16.58051 -16.49726 -16.21148 -15.96241 -15.60251 -15.03210 -14.76434 -14.45073 -14.31210 -13.87312 -13.57249 -13.37402 -12.88317 -12.80169 -12.50100 -12.34193 -12.16598 -11.81980 -11.55332 -11.51135 -11.39670 -11.14144 -11.05613 -10.86906 -10.72098 -10.53083 -10.14097 -9.84497 -9.62308 -8.90235 -8.85334 -8.41773 -7.95188 -7.60208 -6.02537 -4.07296 1.48139 1.53562 1.72463 3.24524 3.32247 3.36781 3.38885 3.50120 3.77648 4.17412 4.46799 4.50747 4.68980 4.88284 4.92480 4.97357 5.04895 5.11762 5.29016 5.34024 5.39523 5.46547 5.47897 5.61579 5.66006 5.79081 5.83320 5.95748 6.14309 6.15245 6.22324 6.24012 6.35424 6.45095 6.78039 6.85010 7.09272 7.42277 7.47370 7.57483 7.94014 8.25727 8.46152 8.92461 9.15258 9.57678 11.05528 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.003188 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.660876 B = 8779.591604 C = 9669.961653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C 0.086 3.914 4 O -0.315 6.315 5 C 0.120 3.880 6 C -0.206 4.206 7 C -0.064 4.064 8 C -0.089 4.089 9 C -0.100 4.100 10 C 0.504 3.496 11 O -0.533 6.533 12 N -0.606 5.606 13 C 0.083 3.917 14 C 0.246 3.754 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.066 4.066 24 C -0.150 4.150 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.127 0.873 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.137 -5.996 10.657 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.011 3.989 4 O -0.229 6.229 5 C 0.075 3.925 6 C -0.225 4.225 7 C -0.083 4.083 8 C -0.090 4.090 9 C -0.140 4.140 10 C 0.290 3.710 11 O -0.410 6.410 12 N -0.338 5.338 13 C -0.061 4.061 14 C 0.126 3.874 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.085 4.085 24 C -0.168 4.168 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.861 -6.713 10.261 21.665 hybrid contribution -0.212 0.706 -1.219 1.424 sum -18.073 -6.007 9.043 21.083 Atomic orbital electron populations 1.23865 0.95416 1.02492 0.99498 1.22702 0.95650 0.97935 1.00728 1.21800 0.87991 0.96555 0.92577 1.86049 1.42195 1.36098 1.58550 1.18924 0.91801 0.85845 0.95880 1.21119 1.03797 0.94333 1.03238 1.20779 0.93817 0.97645 0.96011 1.19292 0.96289 0.95593 0.97839 1.20709 0.95708 0.97027 1.00584 1.20240 0.83379 0.83320 0.84082 1.90690 1.75287 1.32033 1.42971 1.48177 1.27337 1.18863 1.39472 1.21637 1.00749 0.89949 0.93757 1.19267 0.82547 0.98792 0.86760 1.21394 0.99590 1.38149 0.97300 0.92596 1.24940 0.94901 0.95538 0.98782 1.69925 1.05459 1.45188 1.32864 0.86562 0.78040 0.79554 0.83277 1.20269 1.21167 1.20204 1.20778 0.97539 0.91680 0.98453 1.20309 0.95889 0.99694 1.00940 0.88261 0.87512 0.86254 0.91560 0.90921 0.85815 0.85907 0.88699 0.88769 0.93781 0.90841 0.92447 0.95075 0.93895 0.92677 0.85527 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 14.31 29.02 0.42 -0.76 16 2 C -0.15 -1.28 9.89 -36.03 -0.36 -1.63 16 3 C 0.09 0.85 5.15 36.01 0.19 1.03 16 4 O -0.31 -4.10 10.12 -19.44 -0.20 -4.30 16 5 C 0.12 1.70 6.69 -39.22 -0.26 1.43 16 6 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 7 C -0.06 -0.95 9.69 -39.61 -0.38 -1.34 16 8 C -0.09 -1.37 4.37 -104.60 -0.46 -1.83 16 9 C -0.10 -1.48 4.38 -29.03 -0.13 -1.61 16 10 C 0.50 10.53 7.67 -10.99 -0.08 10.44 16 11 O -0.53 -13.73 15.61 5.56 0.09 -13.65 16 12 N -0.61 -12.91 2.86 -182.95 -0.52 -13.43 16 13 C 0.08 1.29 10.24 59.85 0.61 1.91 16 14 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 15 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 16 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.07 -0.95 9.69 -39.61 -0.38 -1.34 16 24 C -0.15 -2.09 9.99 -39.43 -0.39 -2.48 16 25 H 0.10 0.58 7.90 -52.49 -0.41 0.16 16 26 H 0.11 0.56 8.06 -52.49 -0.42 0.13 16 27 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.07 0.57 7.40 -51.93 -0.38 0.19 16 29 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16 30 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 31 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 32 H 0.09 1.20 7.34 -51.93 -0.38 0.82 16 33 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 37 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -34.94 353.05 -7.60 -42.55 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.97 Total: -0.71 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.04 Total: -6.61 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.64 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.11 Total: -17.95 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.94 -7.60 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294350757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.489 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds