Wall clock time and date at job start Tue Mar 31 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99937 * 2 1 4 4 O 1.42905 * 109.46972 * 134.99822 * 3 2 1 5 5 C 1.35905 * 116.99842 * 179.97438 * 4 3 2 6 6 C 1.38729 * 120.05486 * 359.72976 * 5 4 3 7 7 C 1.38146 * 119.94131 * 179.74173 * 6 5 4 8 8 C 1.38261 * 120.05612 * 0.50778 * 7 6 5 9 9 C 1.50703 * 119.94555 * 179.74006 * 8 7 6 10 10 C 1.50699 * 109.47329 * 270.02669 * 9 8 7 11 11 O 1.21275 * 120.00324 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99454 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00441 * 0.02562 * 12 10 9 14 14 C 1.46507 * 119.99445 * 179.97438 * 12 10 9 15 15 C 1.50698 * 109.47229 * 90.00325 * 14 12 10 16 16 H 1.08004 * 119.99824 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00272 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99676 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00258 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47452 * 59.99503 * 19 17 15 21 21 H 1.48498 * 109.47206 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46849 * 299.99579 * 19 17 15 23 23 C 1.38262 * 120.11084 * 359.77089 * 8 7 6 24 24 C 1.38145 * 120.05938 * 359.97279 * 23 8 7 25 25 H 1.08001 * 120.00038 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00393 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99849 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47103 * 15.00009 * 3 2 1 29 29 H 1.09000 * 109.47247 * 254.99887 * 3 2 1 30 30 H 1.08000 * 120.03286 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.97222 * 180.23075 * 7 6 5 32 32 H 1.09002 * 109.46995 * 30.02687 * 9 8 7 33 33 H 1.09006 * 109.46988 * 150.02068 * 9 8 7 34 34 H 1.08992 * 109.47864 * 89.99899 * 13 12 10 35 35 H 1.09006 * 109.46837 * 210.00050 * 13 12 10 36 36 H 1.09002 * 109.46659 * 329.99293 * 13 12 10 37 37 H 1.09001 * 109.46687 * 210.00151 * 14 12 10 38 38 H 1.08997 * 109.47357 * 329.99449 * 14 12 10 39 39 H 0.97002 * 120.00044 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.97562 * 180.02562 * 23 8 7 41 41 H 1.07990 * 120.03151 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9097 2.3450 1.0783 6 6 3.6633 3.4642 0.2965 7 6 4.4574 4.5867 0.4298 8 6 5.5034 4.5916 1.3339 9 6 6.3717 5.8154 1.4732 10 6 7.5310 5.7205 0.5150 11 8 7.6417 4.7541 -0.2093 12 7 8.4449 6.7098 0.4630 13 6 8.3117 7.8770 1.3383 14 6 9.5723 6.6172 -0.4681 15 6 9.1896 7.2439 -1.7841 16 1 8.2050 7.6682 -1.9141 17 6 10.0961 7.2745 -2.8225 18 7 11.2949 6.7574 -2.6643 19 14 9.6215 8.0506 -4.4540 20 1 9.2724 9.4781 -4.2402 21 1 10.7642 7.9570 -5.3977 22 1 8.4507 7.3342 -5.0209 23 6 5.7546 3.4753 2.1101 24 6 4.9602 2.3521 1.9844 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 2.8491 3.4594 -0.4130 31 1 4.2637 5.4597 -0.1759 32 1 5.7846 6.7053 1.2460 33 1 6.7483 5.8795 2.4941 34 1 8.8354 7.6900 2.2757 35 1 8.7438 8.7496 0.8485 36 1 7.2565 8.0599 1.5417 37 1 10.4315 7.1429 -0.0515 38 1 9.8286 5.5696 -0.6253 39 1 11.9328 6.7793 -3.3947 40 1 6.5720 3.4816 2.8159 41 1 5.1570 1.4803 2.5905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294350757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:55 Heat of formation + Delta-G solvation = -48.462199 kcal Electronic energy + Delta-G solvation = -21912.614118 eV Core-core repulsion = 18564.668157 eV Total energy + Delta-G solvation = -3347.945961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28599 -40.48063 -38.57475 -36.50722 -35.09048 -34.73167 -33.00043 -31.97625 -30.04030 -28.35077 -27.36341 -26.92292 -24.71778 -23.72510 -22.33494 -20.87312 -19.95967 -19.16560 -18.68430 -17.78606 -17.42633 -17.14872 -16.88723 -16.45961 -16.25896 -15.75064 -15.43781 -15.14798 -14.52873 -14.44452 -14.34807 -14.13575 -13.78912 -13.60896 -13.42941 -13.35020 -13.15228 -12.87489 -12.70101 -12.60404 -12.36084 -12.18339 -12.11636 -12.03230 -11.72214 -11.67806 -10.64295 -10.59435 -10.44743 -9.92311 -9.37440 -9.03699 -8.21989 -6.37097 0.41473 0.43736 1.12206 1.35766 1.40316 1.47603 1.91184 2.32963 2.39150 2.47907 2.88579 3.07197 3.76282 3.80154 3.92231 3.96243 4.04225 4.06906 4.24481 4.33479 4.42326 4.47317 4.53062 4.60327 4.70945 4.77437 4.79520 4.95502 5.00444 5.04169 5.09911 5.24019 5.31036 5.37851 5.57274 5.59187 5.64149 5.68564 5.83990 5.87162 6.07221 6.44318 6.70955 6.84495 7.29289 7.55276 8.84785 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.003188 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.660876 B = 8779.591604 C = 9669.961653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.178 4.178 3 C 0.080 3.920 4 O -0.327 6.327 5 C 0.112 3.888 6 C -0.212 4.212 7 C -0.079 4.079 8 C -0.111 4.111 9 C -0.083 4.083 10 C 0.495 3.505 11 O -0.594 6.594 12 N -0.614 5.614 13 C 0.077 3.923 14 C 0.259 3.741 15 C -0.541 4.541 16 H 0.054 0.946 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.279 1.279 22 H -0.278 1.278 23 C -0.074 4.074 24 C -0.163 4.163 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.022 0.978 38 H -0.006 1.006 39 H 0.267 0.733 40 H 0.142 0.858 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.377 -4.869 11.183 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.196 4.196 3 C 0.005 3.995 4 O -0.241 6.241 5 C 0.067 3.933 6 C -0.230 4.230 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.122 4.122 10 C 0.284 3.716 11 O -0.475 6.475 12 N -0.345 5.345 13 C -0.065 4.065 14 C 0.137 3.863 15 C -0.580 4.580 16 H 0.072 0.928 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.792 3.208 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.092 4.092 24 C -0.181 4.181 25 H 0.128 0.872 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.040 0.960 38 H 0.012 0.988 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.125 -5.548 10.833 23.519 hybrid contribution 0.427 0.276 -1.347 1.439 sum -19.698 -5.272 9.486 22.490 Atomic orbital electron populations 1.24121 0.94771 1.03860 0.96507 1.22680 0.96309 0.97175 1.03472 1.22026 0.87529 0.98025 0.91875 1.86042 1.42849 1.35804 1.59421 1.19127 0.91997 0.86285 0.95855 1.21364 1.04260 0.93930 1.03476 1.21027 0.94141 0.98378 0.96126 1.19481 0.96815 0.96241 0.98623 1.20680 0.93082 0.98075 1.00362 1.21359 0.84164 0.81942 0.84128 1.90655 1.76809 1.34353 1.45688 1.48216 1.26013 1.21004 1.39290 1.21963 1.03853 0.87263 0.93433 1.18720 0.84459 0.95334 0.87750 1.21685 0.99509 1.38273 0.98528 0.92806 1.25893 0.94787 0.95964 1.02747 1.70052 1.06552 1.46223 1.34162 0.85465 0.77641 0.79343 0.78351 1.18269 1.20388 1.20374 1.21034 0.97882 0.91582 0.98730 1.20578 0.96014 1.00211 1.01307 0.87162 0.85817 0.86546 0.90197 0.91127 0.83833 0.85108 0.85838 0.85238 0.91045 0.91792 0.88375 0.95957 0.98768 0.92432 0.84067 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.18 -2.81 9.89 25.65 0.25 -2.56 16 3 C 0.08 1.51 5.15 71.24 0.37 1.88 16 4 O -0.33 -8.39 10.12 -92.49 -0.94 -9.33 16 5 C 0.11 3.12 6.69 22.51 0.15 3.27 16 6 C -0.21 -5.64 9.04 22.37 0.20 -5.43 16 7 C -0.08 -2.25 9.69 22.25 0.22 -2.03 16 8 C -0.11 -3.25 4.37 -19.85 -0.09 -3.34 16 9 C -0.08 -2.24 4.38 29.10 0.13 -2.11 16 10 C 0.49 20.53 7.67 87.66 0.67 21.20 16 11 O -0.59 -31.58 15.61 -3.02 -0.05 -31.63 16 12 N -0.61 -25.99 2.86 -851.13 -2.43 -28.42 16 13 C 0.08 2.20 10.24 127.77 1.31 3.51 16 14 C 0.26 14.24 5.16 85.63 0.44 14.68 16 15 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 19 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.07 -2.07 9.69 22.25 0.22 -1.85 16 24 C -0.16 -4.47 9.99 22.37 0.22 -4.25 16 25 H 0.11 0.99 7.90 -2.91 -0.02 0.97 16 26 H 0.12 0.97 8.06 -2.91 -0.02 0.94 16 27 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.08 1.26 7.40 -2.38 -0.02 1.24 16 29 H 0.07 1.33 7.65 -2.39 -0.02 1.31 16 30 H 0.14 3.07 6.30 -2.91 -0.02 3.05 16 31 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.12 2.64 7.34 -2.39 -0.02 2.62 16 33 H 0.13 2.59 8.05 -2.38 -0.02 2.57 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.96 8.07 -2.38 -0.02 1.94 16 36 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 37 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 38 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.14 3.33 8.06 -2.92 -0.02 3.31 16 Total: -1.00 -79.25 353.05 5.67 -73.59 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.01 Total: 13.83 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.76 Total: -8.47 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.15 Total: -85.39 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.98 Total: -40.96 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -79.25 5.67 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294350757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.127 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds