Wall clock time and date at job start Tue Mar 31 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 116.99943 * 2 1 4 4 C 1.38752 * 120.05617 * 0.85248 * 3 2 1 5 5 C 1.38124 * 119.94557 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05494 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.10865 * 359.97438 * 6 5 4 8 8 C 1.38161 * 120.05926 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.03061 * 180.02562 * 8 7 6 10 10 C 1.50699 * 115.54927 * 236.27087 * 9 8 7 11 11 O 1.21278 * 120.00269 * 247.28867 * 10 9 8 12 12 N 1.34782 * 119.99748 * 67.28854 * 10 9 8 13 13 C 1.46494 * 120.00262 * 5.25576 * 12 10 9 14 14 C 1.46506 * 119.99556 * 185.24959 * 12 10 9 15 15 C 1.50706 * 109.46595 * 90.00299 * 14 12 10 16 16 H 1.07994 * 120.00498 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99558 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99749 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00286 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46672 * 89.99774 * 19 17 15 21 21 H 1.48491 * 109.47181 * 210.00134 * 19 17 15 22 22 H 1.48497 * 109.47006 * 330.00498 * 19 17 15 23 23 C 1.52992 * 117.49899 * 90.59655 * 9 8 7 24 24 C 1.53001 * 117.49753 * 21.93691 * 9 8 7 25 25 H 1.09005 * 109.47474 * 304.35508 * 1 2 3 26 26 H 1.08996 * 109.47275 * 64.35712 * 1 2 3 27 27 H 1.09002 * 109.47007 * 184.35342 * 1 2 3 28 28 H 1.08001 * 120.02928 * 0.25248 * 4 3 2 29 29 H 1.08000 * 119.97101 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.94435 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.97083 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47491 * 94.71999 * 13 12 10 33 33 H 1.09003 * 109.47171 * 214.72209 * 13 12 10 34 34 H 1.09003 * 109.47348 * 334.71695 * 13 12 10 35 35 H 1.09002 * 109.47307 * 209.99769 * 14 12 10 36 36 H 1.08995 * 109.47338 * 330.00230 * 14 12 10 37 37 H 0.97002 * 120.00131 * 179.97438 * 18 17 15 38 38 H 1.09002 * 117.50027 * 0.02562 * 23 9 8 39 39 H 1.09004 * 117.49630 * 145.02266 * 23 9 8 40 40 H 1.08992 * 117.50134 * 214.98220 * 24 9 8 41 41 H 1.09001 * 117.49716 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3752 0.0179 5 6 1.9209 3.6047 0.0184 6 6 3.3019 3.6758 0.0005 7 6 4.0558 2.5172 -0.0173 8 6 3.4310 1.2850 -0.0168 9 6 4.2535 0.0222 -0.0356 10 6 3.9607 -0.9273 -1.1686 11 8 3.4579 -2.0070 -0.9404 12 7 4.2577 -0.5765 -2.4357 13 6 4.9689 0.6764 -2.7013 14 6 3.8693 -1.4483 -3.5472 15 6 2.4944 -1.0639 -4.0302 16 1 1.9630 -0.2519 -3.5564 17 6 1.9151 -1.7490 -5.0771 18 7 0.7156 -1.4133 -5.4990 19 14 2.8345 -3.1531 -5.8973 20 1 2.5081 -4.4276 -5.2084 21 1 2.4303 -3.2435 -7.3232 22 1 4.2960 -2.9046 -5.8117 23 6 4.6451 -0.5859 1.3125 24 6 5.7005 0.1144 0.4529 25 1 -0.3634 0.5799 0.8484 26 1 -0.3633 0.4447 -0.9264 27 1 -0.3633 -1.0247 0.0780 28 1 0.2130 2.3202 0.0359 29 1 1.3341 4.5113 0.0318 30 1 3.7922 4.6381 0.0014 31 1 5.1341 2.5753 -0.0316 32 1 6.0381 0.4783 -2.7767 33 1 4.6120 1.1053 -3.6376 34 1 4.7859 1.3778 -1.8873 35 1 4.5846 -1.3383 -4.3623 36 1 3.8593 -2.4846 -3.2098 37 1 0.3081 -1.8950 -6.2357 38 1 4.3076 -0.0730 2.2131 39 1 4.6914 -1.6729 1.3798 40 1 6.4406 -0.5121 -0.0449 41 1 6.0576 1.0883 0.7875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299535421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:07 Heat of formation + Delta-G solvation = -5.635265 kcal Electronic energy + Delta-G solvation = -24107.633205 eV Core-core repulsion = 20761.544359 eV Total energy + Delta-G solvation = -3346.088846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51426 -38.91235 -37.25308 -36.00106 -34.71955 -32.41950 -30.69699 -29.94561 -28.51911 -26.95887 -25.94489 -24.39874 -22.80097 -22.40730 -21.46754 -20.71595 -18.43607 -17.69106 -16.86892 -16.53859 -15.76075 -15.50351 -15.28501 -15.20847 -14.63391 -14.33360 -14.14116 -13.93129 -13.39747 -13.17932 -12.59498 -12.45945 -12.25597 -12.16456 -11.86212 -11.74864 -11.54901 -11.41697 -11.32253 -10.90539 -10.84734 -10.77701 -10.52085 -10.37632 -10.12703 -10.07689 -9.47677 -9.00814 -8.58164 -8.53668 -7.87366 -7.54623 -6.04015 -4.01145 1.38973 1.60285 3.32320 3.35781 3.38442 3.40476 3.63366 3.76017 3.90320 4.13890 4.44061 4.65765 4.94692 5.00055 5.05451 5.12844 5.24674 5.29189 5.32879 5.49470 5.53363 5.57664 5.68207 5.76107 5.80217 5.88875 5.90061 5.98690 6.00822 6.12616 6.26374 6.32809 6.48594 6.49728 6.60656 6.79415 6.90960 7.03246 7.47982 7.67491 7.70518 8.39971 8.54440 9.00337 9.14713 9.57463 11.09545 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.006336 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.920266 B = 4417.950257 C = 4955.089067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.289 6.289 3 C 0.152 3.848 4 C -0.210 4.210 5 C -0.081 4.081 6 C -0.163 4.163 7 C -0.078 4.078 8 C -0.077 4.077 9 C -0.099 4.099 10 C 0.555 3.445 11 O -0.530 6.530 12 N -0.592 5.592 13 C 0.079 3.921 14 C 0.215 3.785 15 C -0.521 4.521 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.136 4.136 24 C -0.165 4.165 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 9.874 12.924 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.201 6.201 3 C 0.105 3.895 4 C -0.229 4.229 5 C -0.099 4.099 6 C -0.182 4.182 7 C -0.096 4.096 8 C -0.078 4.078 9 C -0.103 4.103 10 C 0.340 3.660 11 O -0.407 6.407 12 N -0.324 5.324 13 C -0.065 4.065 14 C 0.095 3.905 15 C -0.560 4.560 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.173 4.173 24 C -0.202 4.202 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.282 9.025 12.867 16.926 hybrid contribution -0.109 -0.396 -0.747 0.853 sum 6.173 8.629 12.120 16.108 Atomic orbital electron populations 1.23048 0.78588 1.04026 1.00816 1.86317 1.21072 1.25473 1.87206 1.18922 0.91665 0.84980 0.93900 1.21242 1.00160 0.92299 1.09150 1.20895 0.94692 0.96775 0.97512 1.20911 0.93850 0.97967 1.05433 1.20790 0.99814 0.90736 0.98265 1.18094 0.89901 0.92847 1.06940 1.19900 0.97393 0.96003 0.96988 1.18991 0.78326 0.86138 0.82523 1.90625 1.43119 1.23336 1.83578 1.47658 1.56292 1.22113 1.06296 1.21769 0.95172 0.86866 1.02661 1.19649 0.96213 0.90777 0.83889 1.21331 0.99805 1.18574 1.16242 0.90844 1.24843 0.94770 0.96867 0.96567 1.69896 1.14811 1.41470 1.27714 0.86866 0.80674 0.83489 0.78775 1.19948 1.21138 1.19085 1.22951 1.00669 1.00956 0.92741 1.23128 0.90731 1.02778 1.03540 0.93357 0.92328 0.88226 0.85432 0.86052 0.86001 0.85290 0.93945 0.91257 0.91215 0.95381 0.94580 0.92716 0.88395 0.87802 0.88268 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.83 101.05 0.99 1.47 16 2 O -0.29 -5.72 9.10 -19.43 -0.18 -5.89 16 3 C 0.15 2.68 6.56 -39.22 -0.26 2.42 16 4 C -0.21 -3.11 9.05 -39.43 -0.36 -3.47 16 5 C -0.08 -1.01 10.04 -39.60 -0.40 -1.41 16 6 C -0.16 -1.94 10.04 -39.56 -0.40 -2.34 16 7 C -0.08 -1.01 7.69 -39.61 -0.30 -1.32 16 8 C -0.08 -1.25 4.30 -104.47 -0.45 -1.70 16 9 C -0.10 -1.69 0.80 -156.81 -0.12 -1.82 16 10 C 0.55 12.31 5.92 -10.98 -0.07 12.25 16 11 O -0.53 -13.88 16.22 5.56 0.09 -13.79 16 12 N -0.59 -13.22 2.86 -182.95 -0.52 -13.75 16 13 C 0.08 1.39 10.18 59.84 0.61 1.99 16 14 C 0.22 5.55 4.29 -5.19 -0.02 5.53 16 15 C -0.52 -15.44 9.94 -34.44 -0.34 -15.79 16 16 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 19 Si 0.87 22.11 27.47 -169.99 -4.67 17.44 16 20 H -0.27 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 C -0.14 -1.97 9.76 -26.70 -0.26 -2.23 16 24 C -0.16 -2.10 9.20 -26.69 -0.25 -2.34 16 25 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 26 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 27 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.13 1.67 6.29 -52.49 -0.33 1.34 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.33 6.47 -52.49 -0.34 0.99 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 34 H 0.07 1.09 3.92 -51.93 -0.20 0.88 16 35 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.10 1.61 8.03 -51.93 -0.42 1.19 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.01 6.65 -51.93 -0.35 0.67 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -36.00 337.16 -6.84 -42.84 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.70 Total: 2.09 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.72 Total: -6.71 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.25 Total: -41.05 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.09 Total: -19.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.00 -6.84 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299535421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.203 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds