Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 116.99943 * 2 1 4 4 C 1.38752 * 120.05617 * 0.85248 * 3 2 1 5 5 C 1.38124 * 119.94557 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05494 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.10865 * 359.97438 * 6 5 4 8 8 C 1.38161 * 120.05926 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.03061 * 180.02562 * 8 7 6 10 10 C 1.50699 * 115.54927 * 236.27087 * 9 8 7 11 11 O 1.21278 * 120.00269 * 247.28867 * 10 9 8 12 12 N 1.34782 * 119.99748 * 67.28854 * 10 9 8 13 13 C 1.46494 * 120.00262 * 5.25576 * 12 10 9 14 14 C 1.46506 * 119.99556 * 185.24959 * 12 10 9 15 15 C 1.50706 * 109.46595 * 90.00299 * 14 12 10 16 16 H 1.07994 * 120.00498 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99558 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99749 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00286 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46672 * 89.99774 * 19 17 15 21 21 H 1.48491 * 109.47181 * 210.00134 * 19 17 15 22 22 H 1.48497 * 109.47006 * 330.00498 * 19 17 15 23 23 C 1.52992 * 117.49899 * 90.59655 * 9 8 7 24 24 C 1.53001 * 117.49753 * 21.93691 * 9 8 7 25 25 H 1.09005 * 109.47474 * 304.35508 * 1 2 3 26 26 H 1.08996 * 109.47275 * 64.35712 * 1 2 3 27 27 H 1.09002 * 109.47007 * 184.35342 * 1 2 3 28 28 H 1.08001 * 120.02928 * 0.25248 * 4 3 2 29 29 H 1.08000 * 119.97101 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.94435 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.97083 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47491 * 94.71999 * 13 12 10 33 33 H 1.09003 * 109.47171 * 214.72209 * 13 12 10 34 34 H 1.09003 * 109.47348 * 334.71695 * 13 12 10 35 35 H 1.09002 * 109.47307 * 209.99769 * 14 12 10 36 36 H 1.08995 * 109.47338 * 330.00230 * 14 12 10 37 37 H 0.97002 * 120.00131 * 179.97438 * 18 17 15 38 38 H 1.09002 * 117.50027 * 0.02562 * 23 9 8 39 39 H 1.09004 * 117.49630 * 145.02266 * 23 9 8 40 40 H 1.08992 * 117.50134 * 214.98220 * 24 9 8 41 41 H 1.09001 * 117.49716 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3752 0.0179 5 6 1.9209 3.6047 0.0184 6 6 3.3019 3.6758 0.0005 7 6 4.0558 2.5172 -0.0173 8 6 3.4310 1.2850 -0.0168 9 6 4.2535 0.0222 -0.0356 10 6 3.9607 -0.9273 -1.1686 11 8 3.4579 -2.0070 -0.9404 12 7 4.2577 -0.5765 -2.4357 13 6 4.9689 0.6764 -2.7013 14 6 3.8693 -1.4483 -3.5472 15 6 2.4944 -1.0639 -4.0302 16 1 1.9630 -0.2519 -3.5564 17 6 1.9151 -1.7490 -5.0771 18 7 0.7156 -1.4133 -5.4990 19 14 2.8345 -3.1531 -5.8973 20 1 2.5081 -4.4276 -5.2084 21 1 2.4303 -3.2435 -7.3232 22 1 4.2960 -2.9046 -5.8117 23 6 4.6451 -0.5859 1.3125 24 6 5.7005 0.1144 0.4529 25 1 -0.3634 0.5799 0.8484 26 1 -0.3633 0.4447 -0.9264 27 1 -0.3633 -1.0247 0.0780 28 1 0.2130 2.3202 0.0359 29 1 1.3341 4.5113 0.0318 30 1 3.7922 4.6381 0.0014 31 1 5.1341 2.5753 -0.0316 32 1 6.0381 0.4783 -2.7767 33 1 4.6120 1.1053 -3.6376 34 1 4.7859 1.3778 -1.8873 35 1 4.5846 -1.3383 -4.3623 36 1 3.8593 -2.4846 -3.2098 37 1 0.3081 -1.8950 -6.2357 38 1 4.3076 -0.0730 2.2131 39 1 4.6914 -1.6729 1.3798 40 1 6.4406 -0.5121 -0.0449 41 1 6.0576 1.0883 0.7875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299535421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -30.031216 kcal Electronic energy + Delta-G solvation = -24108.691093 eV Core-core repulsion = 20761.544359 eV Total energy + Delta-G solvation = -3347.146733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77075 -40.37757 -38.53097 -37.26522 -36.52245 -34.64859 -31.77225 -31.02800 -30.55362 -28.20296 -27.47069 -25.98188 -24.21586 -23.64763 -22.58452 -22.21150 -19.83080 -19.15462 -19.01329 -17.90314 -17.20788 -16.92825 -16.71485 -16.54408 -16.22918 -15.67595 -15.50754 -15.32881 -14.81512 -14.57093 -14.39346 -13.82806 -13.71095 -13.66773 -13.56085 -13.22183 -12.95415 -12.75880 -12.54676 -12.46459 -12.39078 -12.07761 -12.03011 -11.96448 -11.77052 -11.47925 -11.34358 -10.84956 -10.58263 -9.71652 -9.34634 -9.03415 -8.35598 -6.39747 0.34067 0.52900 1.29189 1.33636 1.42291 1.78438 2.28705 2.35096 2.45172 2.66469 2.95715 2.98298 3.55613 3.69566 3.89874 3.99123 4.07628 4.16440 4.21326 4.27757 4.39339 4.44849 4.57316 4.59629 4.63117 4.68483 4.70273 4.75103 4.82667 4.93794 4.94669 4.99132 5.09841 5.21989 5.43419 5.44914 5.48756 5.59464 5.65477 5.93256 6.24527 6.51127 6.60016 6.73925 7.20253 7.47806 8.81514 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.006336 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.920266 B = 4417.950257 C = 4955.089067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.331 6.331 3 C 0.107 3.893 4 C -0.224 4.224 5 C -0.082 4.082 6 C -0.152 4.152 7 C -0.074 4.074 8 C -0.094 4.094 9 C -0.122 4.122 10 C 0.546 3.454 11 O -0.588 6.588 12 N -0.602 5.602 13 C 0.075 3.925 14 C 0.224 3.776 15 C -0.529 4.529 16 H 0.022 0.978 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.239 1.239 23 C -0.141 4.141 24 C -0.124 4.124 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.893 12.135 13.445 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.245 6.245 3 C 0.062 3.938 4 C -0.243 4.243 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.091 4.091 8 C -0.095 4.095 9 C -0.125 4.125 10 C 0.335 3.665 11 O -0.469 6.469 12 N -0.333 5.333 13 C -0.067 4.067 14 C 0.101 3.899 15 C -0.568 4.568 16 H 0.040 0.960 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.770 3.230 20 H -0.203 1.203 21 H -0.196 1.196 22 H -0.162 1.162 23 C -0.179 4.179 24 C -0.161 4.161 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.183 0.817 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.590 11.346 13.395 20.003 hybrid contribution -1.217 -0.980 -0.859 1.783 sum 8.373 10.366 12.536 18.295 Atomic orbital electron populations 1.23088 0.77824 1.04248 1.01322 1.86238 1.22337 1.27710 1.88187 1.19449 0.92945 0.84903 0.96508 1.21467 1.00591 0.92681 1.09550 1.21336 0.95804 0.96715 0.96152 1.21423 0.93465 0.99345 1.02784 1.21203 1.01645 0.89484 0.96783 1.18309 0.89301 0.93713 1.08212 1.19703 1.01168 0.95855 0.95780 1.19959 0.76761 0.86238 0.83567 1.90572 1.45483 1.26192 1.84609 1.47788 1.56578 1.23209 1.05703 1.22040 0.96636 0.85200 1.02854 1.19324 0.94409 0.90551 0.85595 1.21468 1.01638 1.17410 1.16247 0.95959 1.25832 0.95706 0.99840 0.97230 1.70048 1.16696 1.43117 1.28562 0.85725 0.80638 0.78843 0.77813 1.20286 1.19646 1.16231 1.23008 1.01932 1.00242 0.92670 1.23351 0.88211 1.04319 1.00224 0.89929 0.94135 0.88693 0.85073 0.83094 0.82007 0.81727 0.90136 0.92516 0.89113 0.93278 0.96606 0.92312 0.86614 0.89836 0.87771 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 9.83 113.37 1.11 2.15 16 2 O -0.33 -14.14 9.10 -92.43 -0.84 -14.98 16 3 C 0.11 3.89 6.56 22.51 0.15 4.03 16 4 C -0.22 -6.64 9.05 22.37 0.20 -6.43 16 5 C -0.08 -1.84 10.04 22.26 0.22 -1.62 16 6 C -0.15 -2.93 10.04 22.28 0.22 -2.70 16 7 C -0.07 -1.61 7.69 22.25 0.17 -1.43 16 8 C -0.09 -2.95 4.30 -19.77 -0.08 -3.03 16 9 C -0.12 -4.03 0.80 -53.67 -0.04 -4.08 16 10 C 0.55 24.88 5.92 87.66 0.52 25.40 16 11 O -0.59 -32.65 16.22 -3.02 -0.05 -32.70 16 12 N -0.60 -27.11 2.86 -851.12 -2.43 -29.54 16 13 C 0.07 2.47 10.18 127.77 1.30 3.77 16 14 C 0.22 11.73 4.29 85.63 0.37 12.09 16 15 C -0.53 -32.83 9.94 25.60 0.25 -32.58 16 16 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 17 C 0.01 0.72 5.47 84.66 0.46 1.18 16 18 N -0.94 -61.16 13.96 21.45 0.30 -60.86 16 19 Si 0.95 46.15 27.47 68.60 1.88 48.04 16 20 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 23 C -0.14 -3.96 9.76 30.62 0.30 -3.66 16 24 C -0.12 -2.71 9.20 30.62 0.28 -2.43 16 25 H 0.08 2.17 7.36 -2.38 -0.02 2.15 16 26 H 0.04 1.48 7.94 -2.39 -0.02 1.46 16 27 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.13 3.56 6.29 -2.91 -0.02 3.54 16 29 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.17 2.31 6.47 -2.91 -0.02 2.30 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 34 H 0.09 2.58 3.92 -2.39 -0.01 2.57 16 35 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 36 H 0.02 0.89 6.79 -2.39 -0.02 0.88 16 37 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 38 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.08 2.65 8.03 -2.39 -0.02 2.63 16 40 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.14 1.93 6.65 -2.39 -0.02 1.92 16 Total: -1.00 -86.26 337.16 5.28 -80.99 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.98 Total: 18.39 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.44 Total: -9.34 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -2.13 Total: -90.40 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.89 Total: -47.68 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -86.26 5.28 -80.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299535421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.955 kcal (2) G-P(sol) polarization free energy of solvation -86.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds