Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35655 * 116.99432 * 2 1 4 4 C 1.38703 * 120.15705 * 0.22921 * 3 2 1 5 5 C 1.38055 * 120.08692 * 180.28593 * 4 3 2 6 6 C 1.38546 * 120.38966 * 359.73879 * 5 4 3 7 7 C 1.37784 * 120.30057 * 0.02562 * 6 5 4 8 8 C 1.39708 * 119.90700 * 0.02562 * 7 6 5 9 9 C 1.47533 * 120.18893 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99884 * 141.92685 * 9 8 7 11 11 N 1.34778 * 120.00259 * 321.92178 * 9 8 7 12 12 C 1.46922 * 120.63081 * 175.11747 * 11 9 8 13 13 C 1.53196 * 108.77244 * 126.37208 * 12 11 9 14 14 C 1.53039 * 109.31133 * 54.63602 * 13 12 11 15 15 C 1.50707 * 109.44869 * 178.61875 * 14 13 12 16 16 H 1.08002 * 119.99909 * 120.05977 * 15 14 13 17 17 C 1.37872 * 119.99950 * 300.06432 * 15 14 13 18 18 N 1.31516 * 120.00098 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47309 * 89.99775 * 19 17 15 21 21 H 1.48509 * 109.47037 * 209.99924 * 19 17 15 22 22 H 1.48498 * 109.47030 * 329.99472 * 19 17 15 23 23 C 1.53039 * 109.53954 * 298.63121 * 14 13 12 24 24 C 1.46929 * 120.63045 * 355.10067 * 11 9 8 25 25 H 1.09005 * 109.47125 * 300.00099 * 1 2 3 26 26 H 1.08994 * 109.47209 * 60.00367 * 1 2 3 27 27 H 1.08999 * 109.46620 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.95688 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.80385 * 179.76237 * 5 4 3 30 30 H 1.08004 * 119.84651 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.04636 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.59182 * 246.15722 * 12 11 9 33 33 H 1.08996 * 109.58782 * 6.58946 * 12 11 9 34 34 H 1.09001 * 109.49774 * 174.58656 * 13 12 11 35 35 H 1.08993 * 109.50019 * 294.68383 * 13 12 11 36 36 H 1.08999 * 109.46011 * 58.65568 * 14 13 12 37 37 H 0.97000 * 119.99872 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.49874 * 301.41980 * 23 14 13 39 39 H 1.08999 * 109.52130 * 181.33232 * 23 14 13 40 40 H 1.09001 * 109.58344 * 353.41251 * 24 11 9 41 41 H 1.09001 * 109.58434 * 113.69602 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2924 2.3740 0.0048 5 6 1.9205 3.6034 -0.0012 6 6 3.3036 3.6838 -0.0065 7 6 4.0667 2.5365 -0.0065 8 6 3.4440 1.2858 -0.0015 9 6 4.2550 0.0534 -0.0020 10 8 3.8991 -0.9088 0.6507 11 7 5.3902 -0.0061 -0.7260 12 6 6.2634 -1.1855 -0.6535 13 6 6.5075 -1.7062 -2.0734 14 6 7.0552 -0.5711 -2.9416 15 6 7.3284 -1.0886 -4.3304 16 1 6.8201 -0.6539 -5.1784 17 6 8.2272 -2.1170 -4.5184 18 7 8.8466 -2.6461 -3.4858 19 14 8.5665 -2.7580 -6.2399 20 1 9.6919 -1.9966 -6.8388 21 1 8.9242 -4.1977 -6.1705 22 1 7.3528 -2.5894 -7.0789 23 6 6.0275 0.5607 -3.0123 24 6 5.7780 1.1071 -1.6031 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.2138 2.3195 0.0081 29 1 1.3302 4.5078 -0.0013 30 1 3.7859 4.6502 -0.0108 31 1 5.1446 2.6039 -0.0111 32 1 7.2139 -0.9090 -0.1973 33 1 5.7816 -1.9608 -0.0578 34 1 7.2301 -2.5217 -2.0426 35 1 5.5693 -2.0666 -2.4951 36 1 7.9806 -0.1946 -2.5058 37 1 9.4792 -3.3694 -3.6182 38 1 5.0937 0.1790 -3.4251 39 1 6.4079 1.3587 -3.6499 40 1 4.9758 1.8445 -1.6339 41 1 6.6875 1.5722 -1.2228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334477405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -41.901477 kcal Electronic energy + Delta-G solvation = -23354.309830 eV Core-core repulsion = 20006.648363 eV Total energy + Delta-G solvation = -3347.661466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63037 -39.06320 -37.34983 -36.62157 -33.54872 -31.82494 -30.89896 -30.25502 -29.75158 -27.40487 -26.24788 -24.05993 -22.80308 -22.31357 -21.76986 -20.10168 -18.81503 -17.73785 -17.01844 -16.36461 -16.22833 -15.85126 -15.30733 -14.99702 -14.54997 -14.48370 -14.35128 -13.66058 -13.34060 -13.12313 -12.82084 -12.65496 -12.57859 -12.26373 -12.08662 -11.83659 -11.56241 -11.23972 -11.14069 -11.09767 -10.91474 -10.59584 -10.38446 -10.03759 -9.53300 -9.45328 -9.27166 -8.90790 -8.80623 -8.35190 -8.30528 -7.89520 -5.99013 -4.05615 0.93113 1.30132 3.09370 3.19800 3.30440 3.37637 3.40737 3.47942 3.84234 4.43661 4.59003 4.69584 4.87169 4.93677 5.02644 5.16017 5.20320 5.30699 5.36953 5.41107 5.53344 5.69867 5.80414 5.97319 6.04207 6.14344 6.16918 6.30648 6.34649 6.46523 6.52174 6.58929 6.67852 6.91670 7.02019 7.25568 7.29610 7.40345 7.73198 7.95518 8.00079 8.10720 8.43726 8.67844 8.97650 9.59321 11.06371 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.004066 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.703122 B = 6885.295276 C = 7116.410970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.291 6.291 3 C 0.176 3.824 4 C -0.221 4.221 5 C -0.062 4.062 6 C -0.169 4.169 7 C -0.050 4.050 8 C -0.158 4.158 9 C 0.558 3.442 10 O -0.538 6.538 11 N -0.596 5.596 12 C 0.110 3.890 13 C -0.122 4.122 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.096 3.904 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.418 12.269 7.330 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.202 6.202 3 C 0.129 3.871 4 C -0.239 4.239 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.069 4.069 8 C -0.162 4.162 9 C 0.346 3.654 10 O -0.416 6.416 11 N -0.328 5.328 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.162 4.162 24 C -0.027 4.027 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.376 11.381 7.711 19.181 hybrid contribution -0.020 -0.177 -1.063 1.077 sum -13.396 11.204 6.648 18.686 Atomic orbital electron populations 1.23118 0.78653 1.04233 1.01036 1.86286 1.20927 1.25921 1.87074 1.18998 0.90934 0.84748 0.92449 1.21183 1.00107 0.92094 1.10552 1.21052 0.94737 0.96885 0.95349 1.20985 0.93794 0.98404 1.05495 1.21384 1.00615 0.90526 0.94338 1.19401 0.90920 0.94729 1.11140 1.17989 0.80564 0.86826 0.80034 1.90748 1.69954 1.37063 1.43840 1.48116 1.22245 1.19808 1.42661 1.21887 0.92046 0.86511 1.00647 1.22003 1.00850 1.02180 0.91047 1.18641 0.92570 0.90347 0.95423 1.21193 1.23642 1.17706 0.92557 0.92759 1.24959 0.95801 0.96516 0.96664 1.69847 1.27854 1.25990 1.29241 0.86623 0.78511 0.78085 0.84946 1.20741 1.21254 1.20016 1.22013 1.00986 1.00065 0.93150 1.22238 0.99684 0.88748 0.92024 0.92662 0.92663 0.88065 0.85065 0.85564 0.85304 0.84215 0.92256 0.90552 0.87863 0.94341 0.95472 0.92976 0.92928 0.92110 0.90258 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.24 16 2 O -0.29 -4.57 9.22 -35.25 -0.33 -4.90 16 3 C 0.18 2.62 6.66 -38.70 -0.26 2.37 16 4 C -0.22 -2.45 9.03 -39.48 -0.36 -2.81 16 5 C -0.06 -0.60 10.03 -39.53 -0.40 -0.99 16 6 C -0.17 -1.72 10.02 -39.63 -0.40 -2.11 16 7 C -0.05 -0.64 7.35 -39.20 -0.29 -0.92 16 8 C -0.16 -2.54 5.23 -104.85 -0.55 -3.09 16 9 C 0.56 10.96 7.18 -12.47 -0.09 10.87 16 10 O -0.54 -12.29 15.48 -11.30 -0.18 -12.46 16 11 N -0.60 -11.46 2.97 -174.00 -0.52 -11.98 16 12 C 0.11 2.31 6.44 -3.71 -0.02 2.28 16 13 C -0.12 -2.92 5.15 -26.61 -0.14 -3.06 16 14 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 15 C -0.51 -13.85 8.56 -34.44 -0.29 -14.14 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.03 11.31 55.43 0.63 -24.40 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 24 C 0.10 1.61 4.84 -3.71 -0.02 1.59 16 25 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.14 1.62 6.29 -52.48 -0.33 1.29 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 34 H 0.10 2.72 6.03 -51.93 -0.31 2.41 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.16 4.53 -51.93 -0.24 0.93 16 41 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -32.36 327.40 -8.43 -40.79 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.71 Total: 0.70 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.24 Total: -8.83 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.11 Total: -36.38 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.50 Total: -17.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.36 -8.43 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334477405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.109 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds