Wall clock time and date at job start Tue Mar 31 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35655 * 116.99432 * 2 1 4 4 C 1.38703 * 120.15705 * 0.22921 * 3 2 1 5 5 C 1.38055 * 120.08692 * 180.28593 * 4 3 2 6 6 C 1.38546 * 120.38966 * 359.73879 * 5 4 3 7 7 C 1.37784 * 120.30057 * 0.02562 * 6 5 4 8 8 C 1.39708 * 119.90700 * 0.02562 * 7 6 5 9 9 C 1.47533 * 120.18893 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99884 * 141.92685 * 9 8 7 11 11 N 1.34778 * 120.00259 * 321.92178 * 9 8 7 12 12 C 1.46922 * 120.63081 * 175.11747 * 11 9 8 13 13 C 1.53196 * 108.77244 * 126.37208 * 12 11 9 14 14 C 1.53039 * 109.31133 * 54.63602 * 13 12 11 15 15 C 1.50707 * 109.44869 * 178.61875 * 14 13 12 16 16 H 1.08002 * 119.99909 * 120.05977 * 15 14 13 17 17 C 1.37872 * 119.99950 * 300.06432 * 15 14 13 18 18 N 1.31516 * 120.00098 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47309 * 89.99775 * 19 17 15 21 21 H 1.48509 * 109.47037 * 209.99924 * 19 17 15 22 22 H 1.48498 * 109.47030 * 329.99472 * 19 17 15 23 23 C 1.53039 * 109.53954 * 298.63121 * 14 13 12 24 24 C 1.46929 * 120.63045 * 355.10067 * 11 9 8 25 25 H 1.09005 * 109.47125 * 300.00099 * 1 2 3 26 26 H 1.08994 * 109.47209 * 60.00367 * 1 2 3 27 27 H 1.08999 * 109.46620 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.95688 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.80385 * 179.76237 * 5 4 3 30 30 H 1.08004 * 119.84651 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.04636 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.59182 * 246.15722 * 12 11 9 33 33 H 1.08996 * 109.58782 * 6.58946 * 12 11 9 34 34 H 1.09001 * 109.49774 * 174.58656 * 13 12 11 35 35 H 1.08993 * 109.50019 * 294.68383 * 13 12 11 36 36 H 1.08999 * 109.46011 * 58.65568 * 14 13 12 37 37 H 0.97000 * 119.99872 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.49874 * 301.41980 * 23 14 13 39 39 H 1.08999 * 109.52130 * 181.33232 * 23 14 13 40 40 H 1.09001 * 109.58344 * 353.41251 * 24 11 9 41 41 H 1.09001 * 109.58434 * 113.69602 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2924 2.3740 0.0048 5 6 1.9205 3.6034 -0.0012 6 6 3.3036 3.6838 -0.0065 7 6 4.0667 2.5365 -0.0065 8 6 3.4440 1.2858 -0.0015 9 6 4.2550 0.0534 -0.0020 10 8 3.8991 -0.9088 0.6507 11 7 5.3902 -0.0061 -0.7260 12 6 6.2634 -1.1855 -0.6535 13 6 6.5075 -1.7062 -2.0734 14 6 7.0552 -0.5711 -2.9416 15 6 7.3284 -1.0886 -4.3304 16 1 6.8201 -0.6539 -5.1784 17 6 8.2272 -2.1170 -4.5184 18 7 8.8466 -2.6461 -3.4858 19 14 8.5665 -2.7580 -6.2399 20 1 9.6919 -1.9966 -6.8388 21 1 8.9242 -4.1977 -6.1705 22 1 7.3528 -2.5894 -7.0789 23 6 6.0275 0.5607 -3.0123 24 6 5.7780 1.1071 -1.6031 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.2138 2.3195 0.0081 29 1 1.3302 4.5078 -0.0013 30 1 3.7859 4.6502 -0.0108 31 1 5.1446 2.6039 -0.0111 32 1 7.2139 -0.9090 -0.1973 33 1 5.7816 -1.9608 -0.0578 34 1 7.2301 -2.5217 -2.0426 35 1 5.5693 -2.0666 -2.4951 36 1 7.9806 -0.1946 -2.5058 37 1 9.4792 -3.3694 -3.6182 38 1 5.0937 0.1790 -3.4251 39 1 6.4079 1.3587 -3.6499 40 1 4.9758 1.8445 -1.6339 41 1 6.6875 1.5722 -1.2228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334477405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:50 Heat of formation + Delta-G solvation = -60.930869 kcal Electronic energy + Delta-G solvation = -23355.135006 eV Core-core repulsion = 20006.648363 eV Total energy + Delta-G solvation = -3348.486643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77883 -40.36707 -38.32799 -38.27561 -35.38924 -33.26328 -32.54958 -31.30286 -31.06619 -28.32811 -27.96422 -25.53343 -24.27998 -23.69645 -22.90260 -21.62441 -20.31245 -18.80948 -18.58974 -18.04892 -17.42049 -16.89854 -16.60397 -16.47023 -15.98354 -15.86582 -15.40535 -14.89666 -14.78356 -14.67662 -14.40861 -14.18311 -13.98098 -13.53704 -13.28385 -13.06356 -12.97153 -12.81808 -12.57962 -12.40262 -12.19971 -12.09321 -12.00056 -11.92170 -11.45296 -11.12220 -10.86184 -10.74375 -10.41233 -9.92802 -9.55921 -9.20247 -8.07840 -6.22014 -0.02629 0.42703 1.40899 1.42576 1.51838 1.76739 2.09753 2.34897 2.43686 2.80660 3.18644 3.51578 3.85067 3.98892 4.09198 4.24554 4.27093 4.30070 4.36183 4.38336 4.44789 4.50445 4.56702 4.58298 4.68414 4.69104 4.85353 4.90363 4.97011 5.15719 5.20624 5.23282 5.36114 5.44190 5.49443 5.52703 5.67347 5.80569 5.96608 6.08926 6.37698 6.39121 6.53868 6.88865 7.18626 7.46128 8.95740 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023912 B = 0.004066 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.703122 B = 6885.295276 C = 7116.410970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.153 3.847 4 C -0.217 4.217 5 C -0.048 4.048 6 C -0.159 4.159 7 C -0.056 4.056 8 C -0.196 4.196 9 C 0.553 3.447 10 O -0.584 6.584 11 N -0.600 5.600 12 C 0.121 3.879 13 C -0.110 4.110 14 C 0.046 3.954 15 C -0.534 4.534 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.117 4.117 24 C 0.102 3.898 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.148 0.852 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.015 0.985 36 H 0.009 0.991 37 H 0.261 0.739 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 15.735 6.971 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.106 3.894 4 C -0.236 4.236 5 C -0.066 4.066 6 C -0.177 4.177 7 C -0.074 4.074 8 C -0.200 4.200 9 C 0.344 3.656 10 O -0.465 6.465 11 N -0.331 5.331 12 C -0.002 4.002 13 C -0.149 4.149 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.155 4.155 24 C -0.019 4.019 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.176 0.824 29 H 0.186 0.814 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.814 14.882 7.338 22.243 hybrid contribution 0.344 -1.209 -0.933 1.565 sum -14.470 13.673 6.406 20.913 Atomic orbital electron populations 1.23394 0.76262 1.05287 1.02813 1.86220 1.23705 1.27363 1.87470 1.19341 0.90909 0.85718 0.93478 1.21532 1.01375 0.91300 1.09346 1.21608 0.94961 0.97687 0.92345 1.21423 0.94150 0.98795 1.03342 1.21538 1.01337 0.90072 0.94501 1.19325 0.91386 0.94010 1.15263 1.18694 0.80231 0.87794 0.78870 1.90700 1.70910 1.39226 1.45709 1.48161 1.22181 1.19596 1.43199 1.21570 0.92857 0.87423 0.98337 1.21766 0.98637 1.01543 0.92944 1.18612 0.93001 0.91626 0.94006 1.21579 1.23708 1.18074 0.93801 0.92984 1.25713 0.95757 0.96816 1.00218 1.69979 1.28242 1.26297 1.31010 0.85656 0.78509 0.77391 0.80690 1.19791 1.21203 1.19649 1.21889 0.98835 0.99033 0.95732 1.22367 1.01818 0.88298 0.89459 0.90726 0.90831 0.87620 0.82371 0.81406 0.81760 0.83435 0.91327 0.91811 0.90731 0.96619 0.97314 0.93031 0.94388 0.90413 0.87192 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -10.65 9.22 -73.84 -0.68 -11.34 16 3 C 0.15 4.39 6.66 22.84 0.15 4.54 16 4 C -0.22 -4.07 9.03 22.34 0.20 -3.86 16 5 C -0.05 -0.67 10.03 22.30 0.22 -0.45 16 6 C -0.16 -2.47 10.02 22.24 0.22 -2.25 16 7 C -0.06 -1.27 7.35 22.52 0.17 -1.11 16 8 C -0.20 -6.17 5.23 -20.01 -0.10 -6.28 16 9 C 0.55 22.34 7.18 86.69 0.62 22.96 16 10 O -0.58 -28.12 15.48 11.85 0.18 -27.94 16 11 N -0.60 -23.46 2.97 -822.66 -2.44 -25.91 16 12 C 0.12 5.28 6.44 86.36 0.56 5.83 16 13 C -0.11 -5.54 5.15 30.67 0.16 -5.38 16 14 C 0.05 2.29 2.06 -11.51 -0.02 2.26 16 15 C -0.53 -29.37 8.56 25.60 0.22 -29.15 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.75 5.30 84.65 0.45 1.20 16 18 N -0.92 -52.90 11.31 21.45 0.24 -52.66 16 19 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C -0.12 -4.65 5.30 30.67 0.16 -4.49 16 24 C 0.10 3.32 4.84 86.36 0.42 3.74 16 25 H 0.07 1.05 7.65 -2.38 -0.02 1.03 16 26 H 0.07 1.05 7.67 -2.39 -0.02 1.04 16 27 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 29 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 31 H 0.15 2.99 6.29 -2.91 -0.02 2.97 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.06 2.92 6.99 -2.39 -0.02 2.91 16 34 H 0.07 4.17 6.03 -2.39 -0.01 4.15 16 35 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 40 H 0.11 2.97 4.53 -2.39 -0.01 2.96 16 41 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 Total: -1.00 -74.76 327.40 4.89 -69.86 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.03 Total: 13.09 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.54 Total: -11.00 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.20 Total: -78.57 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.50 Total: -39.27 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -74.76 4.89 -69.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334477405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.934 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds