Wall clock time and date at job start Tue Mar 31 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37100 * 119.99839 * 2 1 4 4 H 1.08000 * 119.99439 * 137.71911 * 3 2 1 5 5 C 1.38955 * 119.99953 * 317.72227 * 3 2 1 6 6 N 1.31407 * 119.99691 * 157.86000 * 5 3 2 7 7 Si 1.86796 * 119.99846 * 337.85870 * 5 3 2 8 8 H 1.48501 * 109.47167 * 86.60953 * 7 5 3 9 9 H 1.48507 * 109.46649 * 206.60708 * 7 5 3 10 10 H 1.48498 * 109.47439 * 326.60472 * 7 5 3 11 11 C 1.34775 * 119.99999 * 180.02562 * 2 1 3 12 12 O 1.21299 * 119.99854 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00235 * 0.02562 * 11 2 1 14 14 H 1.08994 * 109.52268 * 40.66757 * 13 11 2 15 15 C 1.53099 * 109.56836 * 280.50805 * 13 11 2 16 16 O 1.42901 * 109.41705 * 297.67291 * 15 13 11 17 17 C 1.42904 * 114.09656 * 298.84241 * 16 15 13 18 18 C 1.53098 * 109.41577 * 61.15675 * 17 16 15 19 19 C 1.53171 * 109.16319 * 302.39555 * 18 17 16 20 20 H 1.08998 * 109.54240 * 297.10394 * 19 18 17 21 21 C 1.50701 * 109.54288 * 176.93678 * 19 18 17 22 22 C 1.38237 * 120.00294 * 156.12492 * 21 19 18 23 23 C 1.38232 * 120.00037 * 179.74241 * 22 21 19 24 24 C 1.38236 * 119.99813 * 0.52910 * 23 22 21 25 25 C 1.38228 * 120.00209 * 359.74350 * 24 23 22 26 26 C 1.38237 * 120.00273 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47266 * 264.59191 * 1 2 3 28 28 H 1.08999 * 109.47668 * 24.59465 * 1 2 3 29 29 H 1.08998 * 109.47367 * 144.60102 * 1 2 3 30 30 H 0.96996 * 119.99974 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47498 * 177.68673 * 15 13 11 32 32 H 1.08997 * 109.48079 * 57.65809 * 15 13 11 33 33 H 1.08999 * 109.48312 * 181.13819 * 17 16 15 34 34 H 1.09005 * 109.48115 * 301.17746 * 17 16 15 35 35 H 1.08999 * 109.51754 * 62.29813 * 18 17 16 36 36 H 1.08999 * 109.52110 * 182.48208 * 18 17 16 37 37 H 1.08001 * 119.99768 * 359.97438 * 22 21 19 38 38 H 1.07996 * 120.00106 * 180.29409 * 23 22 21 39 39 H 1.08007 * 119.99454 * 179.77185 * 24 23 22 40 40 H 1.07999 * 120.00047 * 180.02562 * 25 24 23 41 41 H 1.07990 * 120.00302 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0197 1.3089 0.6293 5 6 1.7267 2.2342 -0.8095 6 7 2.0706 3.4691 -0.5204 7 14 0.6682 1.8860 -2.3088 8 1 -0.7613 1.8506 -1.9081 9 1 0.8730 2.9557 -3.3184 10 1 1.0515 0.5752 -2.8918 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.5287 -2.3978 -0.6714 15 6 0.9006 -2.7858 1.4163 16 8 2.0281 -2.9403 2.2805 17 6 2.9036 -4.0081 1.9123 18 6 3.4688 -3.7437 0.5143 19 6 2.3104 -3.5969 -0.4769 20 1 1.7522 -4.5318 -0.5264 21 6 2.8542 -3.2619 -1.8419 22 6 2.1142 -3.5556 -2.9720 23 6 2.6108 -3.2434 -4.2237 24 6 3.8521 -2.6475 -4.3459 25 6 4.5945 -2.3589 -3.2162 26 6 4.0955 -2.6658 -1.9641 27 1 -0.3634 -0.0969 1.0231 28 1 -0.3634 0.9344 -0.4277 29 1 -0.3634 -0.8377 -0.5953 30 1 1.7745 4.1999 -1.0853 31 1 0.3210 -3.7089 1.4064 32 1 0.2761 -1.9681 1.7760 33 1 3.7220 -4.0708 2.6294 34 1 2.3501 -4.9471 1.9090 35 1 4.0562 -2.8256 0.5266 36 1 4.1021 -4.5783 0.2137 37 1 1.1465 -4.0255 -2.8767 38 1 2.0306 -3.4685 -5.1063 39 1 4.2416 -2.4069 -5.3242 40 1 5.5641 -1.8930 -3.3117 41 1 4.6753 -2.4399 -1.0815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334872415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:17 Heat of formation + Delta-G solvation = -33.262386 kcal Electronic energy + Delta-G solvation = -24622.178668 eV Core-core repulsion = 21274.891821 eV Total energy + Delta-G solvation = -3347.286847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47537 -38.38423 -37.54534 -34.94516 -33.75292 -32.20237 -31.00504 -30.39202 -29.67504 -26.42976 -25.30906 -24.77667 -23.41728 -22.29806 -21.32535 -20.27817 -18.20783 -17.13920 -16.81240 -16.33139 -15.73280 -15.47253 -15.31380 -15.02367 -14.43582 -14.26556 -13.88852 -13.72031 -13.53551 -12.97255 -12.77714 -12.64656 -12.41948 -12.32384 -12.03925 -11.95352 -11.67848 -11.43572 -10.98521 -10.97576 -10.71693 -10.57586 -10.33871 -10.29696 -10.03914 -9.89374 -9.30463 -8.92063 -8.48128 -8.37685 -8.05551 -7.57482 -6.34953 -3.94206 1.73482 1.85726 3.05072 3.24690 3.33282 3.75764 4.16179 4.18166 4.20518 4.48401 4.90530 4.99064 5.04701 5.09087 5.28180 5.31123 5.34185 5.42323 5.49742 5.56495 5.57822 5.67361 5.77377 5.85984 5.89291 5.94935 6.00098 6.05345 6.10984 6.24046 6.27481 6.38646 6.42779 6.51366 6.81899 6.82723 7.00558 7.15116 7.43853 7.45728 7.62347 8.38821 8.58831 9.05804 9.38074 9.86945 10.77425 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.008743 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.459184 B = 3201.693488 C = 4453.020610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.472 5.472 3 C -0.311 4.311 4 H 0.102 0.898 5 C 0.063 3.937 6 N -0.866 5.866 7 Si 0.871 3.129 8 H -0.274 1.274 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.489 3.511 12 O -0.547 6.547 13 C -0.141 4.141 14 H 0.090 0.910 15 C 0.075 3.925 16 O -0.372 6.372 17 C 0.065 3.935 18 C -0.173 4.173 19 C -0.023 4.023 20 H 0.073 0.927 21 C -0.077 4.077 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.072 4.072 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.272 0.728 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.125 0.875 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 -15.467 -2.395 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.194 5.194 3 C -0.438 4.438 4 H 0.119 0.881 5 C -0.143 4.143 6 N -0.503 5.503 7 Si 0.698 3.302 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.188 1.188 11 C 0.277 3.723 12 O -0.428 6.428 13 C -0.163 4.163 14 H 0.108 0.892 15 C -0.003 4.003 16 O -0.291 6.291 17 C -0.011 4.011 18 C -0.210 4.210 19 C -0.042 4.042 20 H 0.091 0.909 21 C -0.077 4.077 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.090 4.090 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.143 0.857 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.283 -15.109 -2.275 15.449 hybrid contribution -0.962 -0.032 -1.328 1.640 sum -3.246 -15.141 -3.603 15.899 Atomic orbital electron populations 1.22120 0.83942 1.01865 1.00602 1.43593 1.03734 1.05615 1.66418 1.18949 1.13688 0.86692 1.24443 0.88080 1.25387 0.96972 0.94806 0.97118 1.69764 1.44828 0.98521 1.37141 0.87108 0.79899 0.79105 0.84101 1.20094 1.21453 1.18803 1.19823 0.87994 0.84019 0.80461 1.90324 1.13787 1.86022 1.52657 1.22076 0.99623 0.95911 0.98709 0.89185 1.22481 0.88311 1.00950 0.88530 1.87988 1.36550 1.53366 1.51169 1.22533 0.93176 0.88860 0.96576 1.22753 0.98793 1.05504 0.93899 1.19866 0.96034 0.96309 0.91991 0.90882 1.19713 0.94963 0.99121 0.93920 1.20922 0.99317 1.01396 0.92444 1.20942 0.96344 1.00885 0.96977 1.21063 0.95243 0.99848 0.98321 1.21188 1.00158 1.00334 0.92868 1.21449 0.95485 0.94304 0.97761 0.93281 0.91077 0.93222 0.91737 0.93040 0.88496 0.89249 0.94212 0.85710 0.91881 0.86898 0.86852 0.86868 0.86515 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 8.20 59.84 0.49 1.65 16 2 N -0.47 -11.42 2.48 -122.19 -0.30 -11.72 16 3 C -0.31 -8.86 9.25 -14.93 -0.14 -9.00 16 4 H 0.10 3.25 8.00 -52.49 -0.42 2.83 16 5 C 0.06 1.76 5.23 -17.47 -0.09 1.67 16 6 N -0.87 -25.44 13.96 55.50 0.77 -24.66 16 7 Si 0.87 21.09 25.60 -169.99 -4.35 16.73 16 8 H -0.27 -6.09 6.36 56.52 0.36 -5.73 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.26 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.49 11.01 5.87 -10.99 -0.06 10.94 16 12 O -0.55 -13.55 10.44 5.54 0.06 -13.50 16 13 C -0.14 -2.41 1.87 -91.63 -0.17 -2.58 16 14 H 0.09 1.42 6.40 -51.93 -0.33 1.09 16 15 C 0.07 1.13 6.17 37.21 0.23 1.36 16 16 O -0.37 -6.41 10.45 -35.23 -0.37 -6.78 16 17 C 0.07 0.92 6.84 37.21 0.25 1.17 16 18 C -0.17 -2.65 4.35 -26.59 -0.12 -2.76 16 19 C -0.02 -0.36 2.22 -91.59 -0.20 -0.56 16 20 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 21 C -0.08 -1.32 4.43 -104.62 -0.46 -1.78 16 22 C -0.12 -1.91 9.73 -39.58 -0.39 -2.30 16 23 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.13 -1.98 10.05 -39.59 -0.40 -2.37 16 25 C -0.13 -2.17 10.05 -39.59 -0.40 -2.57 16 26 C -0.07 -1.33 7.47 -39.58 -0.30 -1.62 16 27 H 0.05 0.86 7.32 -51.93 -0.38 0.48 16 28 H 0.07 1.51 3.98 -51.93 -0.21 1.30 16 29 H 0.05 0.83 6.19 -51.93 -0.32 0.51 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.46 6.70 -51.93 -0.35 1.11 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.13 2.36 4.04 -51.93 -0.21 2.15 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.14 2.73 5.04 -52.49 -0.26 2.47 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -32.41 314.18 -7.07 -39.48 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.46 Total: 6.87 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.15 Total: -11.16 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.47 Total: -36.38 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.31 Total: -20.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.35 Total: 16.73 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.41 -7.07 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334872415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.215 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds