Wall clock time and date at job start Tue Mar 31 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37100 * 119.99839 * 2 1 4 4 H 1.08000 * 119.99439 * 137.71911 * 3 2 1 5 5 C 1.38955 * 119.99953 * 317.72227 * 3 2 1 6 6 N 1.31407 * 119.99691 * 157.86000 * 5 3 2 7 7 Si 1.86796 * 119.99846 * 337.85870 * 5 3 2 8 8 H 1.48501 * 109.47167 * 86.60953 * 7 5 3 9 9 H 1.48507 * 109.46649 * 206.60708 * 7 5 3 10 10 H 1.48498 * 109.47439 * 326.60472 * 7 5 3 11 11 C 1.34775 * 119.99999 * 180.02562 * 2 1 3 12 12 O 1.21299 * 119.99854 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00235 * 0.02562 * 11 2 1 14 14 H 1.08994 * 109.52268 * 40.66757 * 13 11 2 15 15 C 1.53099 * 109.56836 * 280.50805 * 13 11 2 16 16 O 1.42901 * 109.41705 * 297.67291 * 15 13 11 17 17 C 1.42904 * 114.09656 * 298.84241 * 16 15 13 18 18 C 1.53098 * 109.41577 * 61.15675 * 17 16 15 19 19 C 1.53171 * 109.16319 * 302.39555 * 18 17 16 20 20 H 1.08998 * 109.54240 * 297.10394 * 19 18 17 21 21 C 1.50701 * 109.54288 * 176.93678 * 19 18 17 22 22 C 1.38237 * 120.00294 * 156.12492 * 21 19 18 23 23 C 1.38232 * 120.00037 * 179.74241 * 22 21 19 24 24 C 1.38236 * 119.99813 * 0.52910 * 23 22 21 25 25 C 1.38228 * 120.00209 * 359.74350 * 24 23 22 26 26 C 1.38237 * 120.00273 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47266 * 264.59191 * 1 2 3 28 28 H 1.08999 * 109.47668 * 24.59465 * 1 2 3 29 29 H 1.08998 * 109.47367 * 144.60102 * 1 2 3 30 30 H 0.96996 * 119.99974 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47498 * 177.68673 * 15 13 11 32 32 H 1.08997 * 109.48079 * 57.65809 * 15 13 11 33 33 H 1.08999 * 109.48312 * 181.13819 * 17 16 15 34 34 H 1.09005 * 109.48115 * 301.17746 * 17 16 15 35 35 H 1.08999 * 109.51754 * 62.29813 * 18 17 16 36 36 H 1.08999 * 109.52110 * 182.48208 * 18 17 16 37 37 H 1.08001 * 119.99768 * 359.97438 * 22 21 19 38 38 H 1.07996 * 120.00106 * 180.29409 * 23 22 21 39 39 H 1.08007 * 119.99454 * 179.77185 * 24 23 22 40 40 H 1.07999 * 120.00047 * 180.02562 * 25 24 23 41 41 H 1.07990 * 120.00302 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0197 1.3089 0.6293 5 6 1.7267 2.2342 -0.8095 6 7 2.0706 3.4691 -0.5204 7 14 0.6682 1.8860 -2.3088 8 1 -0.7613 1.8506 -1.9081 9 1 0.8730 2.9557 -3.3184 10 1 1.0515 0.5752 -2.8918 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.5287 -2.3978 -0.6714 15 6 0.9006 -2.7858 1.4163 16 8 2.0281 -2.9403 2.2805 17 6 2.9036 -4.0081 1.9123 18 6 3.4688 -3.7437 0.5143 19 6 2.3104 -3.5969 -0.4769 20 1 1.7522 -4.5318 -0.5264 21 6 2.8542 -3.2619 -1.8419 22 6 2.1142 -3.5556 -2.9720 23 6 2.6108 -3.2434 -4.2237 24 6 3.8521 -2.6475 -4.3459 25 6 4.5945 -2.3589 -3.2162 26 6 4.0955 -2.6658 -1.9641 27 1 -0.3634 -0.0969 1.0231 28 1 -0.3634 0.9344 -0.4277 29 1 -0.3634 -0.8377 -0.5953 30 1 1.7745 4.1999 -1.0853 31 1 0.3210 -3.7089 1.4064 32 1 0.2761 -1.9681 1.7760 33 1 3.7220 -4.0708 2.6294 34 1 2.3501 -4.9471 1.9090 35 1 4.0562 -2.8256 0.5266 36 1 4.1021 -4.5783 0.2137 37 1 1.1465 -4.0255 -2.8767 38 1 2.0306 -3.4685 -5.1063 39 1 4.2416 -2.4069 -5.3242 40 1 5.5641 -1.8930 -3.3117 41 1 4.6753 -2.4399 -1.0815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334872415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:16 Heat of formation + Delta-G solvation = -54.470060 kcal Electronic energy + Delta-G solvation = -24623.098302 eV Core-core repulsion = 21274.891821 eV Total energy + Delta-G solvation = -3348.206481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84264 -39.70846 -39.00417 -36.68339 -35.10208 -34.19608 -32.34597 -31.62399 -30.88096 -28.15826 -27.03872 -25.96876 -24.79218 -23.62022 -22.51305 -21.69540 -19.78539 -19.04021 -18.17609 -17.81125 -17.25747 -16.95300 -16.57011 -16.34265 -15.74778 -15.59067 -15.34431 -15.17038 -15.07947 -14.49825 -14.35136 -14.09687 -13.87562 -13.77570 -13.48480 -13.28975 -13.05659 -12.87459 -12.74885 -12.24805 -12.16556 -12.07193 -11.90839 -11.73405 -11.50379 -11.23031 -10.91128 -10.51549 -9.88758 -9.70518 -9.55424 -9.37988 -8.49782 -6.12675 0.51610 0.62193 1.15881 1.30284 1.42067 2.10235 2.18242 2.76446 2.93582 2.98772 3.09692 3.75387 3.79282 3.83941 4.03803 4.16195 4.18643 4.21779 4.28519 4.38763 4.44191 4.51208 4.55836 4.63313 4.68474 4.69272 4.75560 4.83278 4.86203 4.91223 5.02375 5.10528 5.25617 5.28893 5.57673 5.59317 5.62479 5.74593 5.91430 6.10577 6.23466 6.35375 6.66413 7.04706 7.40205 8.03729 8.68345 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.008743 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.459184 B = 3201.693488 C = 4453.020610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.492 5.492 3 C -0.322 4.322 4 H 0.036 0.964 5 C 0.013 3.987 6 N -0.916 5.916 7 Si 0.944 3.056 8 H -0.231 1.231 9 H -0.291 1.291 10 H -0.270 1.270 11 C 0.479 3.521 12 O -0.580 6.580 13 C -0.132 4.132 14 H 0.115 0.885 15 C 0.072 3.928 16 O -0.407 6.407 17 C 0.064 3.936 18 C -0.171 4.171 19 C -0.022 4.022 20 H 0.116 0.884 21 C -0.091 4.091 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.153 4.153 26 C -0.101 4.101 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.277 0.723 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -18.743 -4.094 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.216 5.216 3 C -0.450 4.450 4 H 0.054 0.946 5 C -0.188 4.188 6 N -0.554 5.554 7 Si 0.768 3.232 8 H -0.155 1.155 9 H -0.218 1.218 10 H -0.195 1.195 11 C 0.270 3.730 12 O -0.462 6.462 13 C -0.154 4.154 14 H 0.133 0.867 15 C -0.004 4.004 16 O -0.326 6.326 17 C -0.012 4.012 18 C -0.208 4.208 19 C -0.040 4.040 20 H 0.134 0.866 21 C -0.091 4.091 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.171 4.171 26 C -0.119 4.119 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.134 0.866 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.099 -18.406 -3.952 19.788 hybrid contribution 0.391 0.951 -0.726 1.259 sum -5.708 -17.455 -4.678 18.951 Atomic orbital electron populations 1.22307 0.80939 1.02802 1.02827 1.43763 1.05596 1.04592 1.67612 1.18507 1.12900 0.89382 1.24235 0.94579 1.26139 0.98945 0.94041 0.99719 1.69887 1.47218 0.99690 1.38601 0.85949 0.80270 0.78035 0.78978 1.15534 1.21775 1.19467 1.20954 0.88108 0.85590 0.78390 1.90364 1.15857 1.86973 1.53049 1.22116 0.99803 0.92495 1.00966 0.86689 1.22679 0.87984 1.03254 0.86519 1.87952 1.37701 1.54841 1.52095 1.22685 0.93449 0.89545 0.95538 1.22621 0.98952 1.03904 0.95298 1.19992 0.95892 0.97317 0.90816 0.86586 1.19972 0.94479 0.99106 0.95564 1.21345 1.00383 1.00681 0.91794 1.21414 0.96031 0.99573 0.98308 1.21395 0.95697 0.99554 0.98620 1.21384 1.00890 1.01317 0.93485 1.21419 0.96904 0.96289 0.97292 0.91126 0.92429 0.89124 0.91341 0.88161 0.88759 0.89106 0.90401 0.90240 0.90287 0.83340 0.83538 0.84599 0.86617 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 8.20 127.77 1.05 3.02 16 2 N -0.49 -23.93 2.48 -658.89 -1.63 -25.56 16 3 C -0.32 -19.36 9.25 84.04 0.78 -18.59 16 4 H 0.04 2.56 8.00 -2.91 -0.02 2.54 16 5 C 0.01 0.75 5.23 84.93 0.44 1.20 16 6 N -0.92 -56.17 13.96 21.66 0.30 -55.87 16 7 Si 0.94 43.41 25.60 68.60 1.76 45.17 16 8 H -0.23 -9.02 6.36 99.48 0.63 -8.39 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 C 0.48 21.65 5.87 87.66 0.51 22.16 16 12 O -0.58 -30.44 10.44 -3.09 -0.03 -30.47 16 13 C -0.13 -4.08 1.87 -11.45 -0.02 -4.10 16 14 H 0.12 2.96 6.40 -2.39 -0.02 2.95 16 15 C 0.07 1.91 6.17 72.02 0.44 2.36 16 16 O -0.41 -13.27 10.45 -148.98 -1.56 -14.83 16 17 C 0.06 1.66 6.84 72.01 0.49 2.15 16 18 C -0.17 -5.08 4.35 30.68 0.13 -4.94 16 19 C -0.02 -0.61 2.22 -11.42 -0.03 -0.63 16 20 H 0.12 2.28 8.12 -2.39 -0.02 2.26 16 21 C -0.09 -2.93 4.43 -19.86 -0.09 -3.02 16 22 C -0.12 -3.35 9.73 22.27 0.22 -3.14 16 23 C -0.14 -3.60 10.05 22.27 0.22 -3.37 16 24 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 25 C -0.15 -5.35 10.05 22.27 0.22 -5.13 16 26 C -0.10 -3.82 7.47 22.27 0.17 -3.66 16 27 H 0.07 2.27 7.32 -2.39 -0.02 2.25 16 28 H 0.06 2.26 3.98 -2.39 -0.01 2.25 16 29 H 0.09 2.56 6.19 -2.39 -0.01 2.54 16 30 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.51 6.70 -2.39 -0.02 2.49 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.08 3.18 4.04 -2.39 -0.01 3.17 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.11 4.85 5.04 -2.92 -0.01 4.83 16 Total: -1.00 -78.25 314.18 4.58 -73.67 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.96 Total: 27.34 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.77 Total: -19.45 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.33 Total: -81.43 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.59 Total: -45.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.76 Total: 45.17 kcal Total: -78.25 4.58 -73.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334872415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.205 kcal (2) G-P(sol) polarization free energy of solvation -78.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds