Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47618 * 2 1 4 4 C 1.36901 * 119.99907 * 74.78609 * 3 2 1 5 5 H 1.08003 * 120.00227 * 177.53947 * 4 3 2 6 6 C 1.39027 * 120.00105 * 357.54228 * 4 3 2 7 7 N 1.31382 * 119.99887 * 33.98800 * 6 4 3 8 8 Si 1.86797 * 119.99884 * 213.99316 * 6 4 3 9 9 H 1.48501 * 109.47340 * 89.99759 * 8 6 4 10 10 H 1.48505 * 109.46848 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.47290 * 329.99364 * 8 6 4 12 12 C 1.34773 * 119.99887 * 254.79031 * 3 2 1 13 13 O 1.21626 * 120.00105 * 183.34873 * 12 3 2 14 14 C 1.47493 * 120.00346 * 3.35084 * 12 3 2 15 15 C 1.39814 * 120.27157 * 39.92824 * 14 12 3 16 16 C 1.37459 * 120.19365 * 180.02562 * 15 14 12 17 17 C 1.39604 * 120.43812 * 359.49508 * 16 15 14 18 18 C 1.39201 * 119.11039 * 0.83259 * 17 16 15 19 19 C 1.37293 * 120.94274 * 359.24641 * 18 17 16 20 20 C 1.51679 * 106.99528 * 178.78742 * 18 17 16 21 21 C 1.54700 * 101.90420 * 344.64290 * 20 18 17 22 22 C 1.53000 * 110.74766 * 267.00749 * 21 20 18 23 23 C 1.53002 * 110.89666 * 143.74851 * 21 20 18 24 24 O 1.35997 * 129.72159 * 180.78193 * 17 16 15 25 25 H 1.08996 * 109.46727 * 289.23473 * 1 2 3 26 26 H 1.09001 * 109.46761 * 49.23243 * 1 2 3 27 27 H 1.08995 * 109.47406 * 169.22993 * 1 2 3 28 28 H 1.09009 * 109.46911 * 240.00046 * 2 1 3 29 29 H 1.08998 * 109.47028 * 120.00523 * 2 1 3 30 30 H 0.96995 * 119.99696 * 179.97438 * 7 6 4 31 31 H 1.07997 * 119.90178 * 359.79040 * 15 14 12 32 32 H 1.08003 * 119.77973 * 179.74628 * 16 15 14 33 33 H 1.07993 * 120.07325 * 180.31799 * 19 18 17 34 34 H 1.08993 * 110.94532 * 102.80081 * 20 18 17 35 35 H 1.09000 * 110.94559 * 226.49574 * 20 18 17 36 36 H 1.09005 * 109.46990 * 174.84974 * 22 21 20 37 37 H 1.08997 * 109.47639 * 294.85386 * 22 21 20 38 38 H 1.08998 * 109.46722 * 54.85481 * 22 21 20 39 39 H 1.09005 * 109.47170 * 305.06374 * 23 21 20 40 40 H 1.09003 * 109.47538 * 65.06212 * 23 21 20 41 41 H 1.09000 * 109.47692 * 185.06414 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9533 2.1302 1.1441 5 1 2.3496 3.1349 1.1551 6 6 1.3772 1.5977 2.2918 7 7 1.4979 0.3158 2.5533 8 14 0.4313 2.7047 3.4619 9 1 -0.9982 2.7420 3.0614 10 1 0.5443 2.1748 4.8446 11 1 0.9959 4.0772 3.4102 12 6 2.5318 1.9143 -1.1263 13 8 2.9930 3.0397 -1.1111 14 6 2.5343 1.1333 -2.3774 15 6 1.4328 0.3418 -2.7164 16 6 1.4370 -0.3859 -3.8826 17 6 2.5342 -0.3345 -4.7443 18 6 3.6309 0.4498 -4.3982 19 6 3.6382 1.1793 -3.2352 20 6 4.6611 0.2817 -5.4987 21 6 4.1380 -0.9734 -6.2365 22 6 4.7944 -2.2400 -5.6835 23 6 4.3729 -0.8579 -7.7439 24 8 2.7321 -0.9563 -5.9375 25 1 -0.3632 0.3385 0.9703 26 1 -0.3633 0.6711 -0.7783 27 1 -0.3634 -1.0095 -0.1920 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.0962 -0.0556 3.3542 31 1 0.5776 0.2990 -2.0582 32 1 0.5842 -0.9983 -4.1359 33 1 4.4945 1.7871 -2.9830 34 1 4.6690 1.1477 -6.1606 35 1 5.6520 0.1034 -5.0811 36 1 4.3460 -3.1160 -6.1524 37 1 5.8627 -2.2194 -5.8989 38 1 4.6421 -2.2870 -4.6053 39 1 3.9247 0.0652 -8.1118 40 1 5.4441 -0.8469 -7.9451 41 1 3.9171 -1.7095 -8.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335357951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -22.474638 kcal Electronic energy + Delta-G solvation = -23364.405155 eV Core-core repulsion = 20017.586099 eV Total energy + Delta-G solvation = -3346.819056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19633 -39.03478 -36.68706 -35.18921 -33.82481 -32.20011 -31.17006 -29.79511 -29.60089 -27.65193 -26.59524 -25.20315 -22.86842 -21.98881 -21.53807 -20.64147 -19.22383 -17.09824 -17.00653 -16.52950 -15.76447 -15.44387 -15.12298 -14.41393 -14.11714 -14.01474 -13.88494 -13.41836 -13.33885 -13.14704 -12.80417 -12.56862 -12.33472 -12.26209 -12.15094 -11.97990 -11.82231 -11.72352 -11.42530 -11.14609 -11.01119 -10.97136 -10.69800 -10.37784 -10.34259 -10.21402 -9.83609 -9.05068 -8.56677 -8.47792 -7.82325 -7.72227 -6.41162 -3.78966 1.45023 1.67130 3.11549 3.23707 3.25239 3.30098 3.68208 4.04466 4.24479 4.40688 4.50434 4.67277 4.83262 4.95929 5.09820 5.11262 5.27098 5.32140 5.45349 5.47238 5.57633 5.59619 5.65177 5.74031 5.80829 5.92450 5.97341 6.02845 6.06810 6.31402 6.35057 6.42493 6.54902 6.63274 6.67871 6.86198 6.90692 7.16702 7.30154 7.43598 7.64295 8.06362 8.47977 9.12315 9.39580 9.97774 10.49385 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.003971 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.949044 B = 7049.566210 C = 7355.830706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.076 3.924 3 N -0.422 5.422 4 C -0.314 4.314 5 H 0.109 0.891 6 C 0.043 3.957 7 N -0.847 5.847 8 Si 0.909 3.091 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.471 3.529 13 O -0.594 6.594 14 C -0.115 4.115 15 C -0.076 4.076 16 C -0.145 4.145 17 C 0.102 3.898 18 C -0.183 4.183 19 C -0.032 4.032 20 C -0.097 4.097 21 C 0.100 3.900 22 C -0.162 4.162 23 C -0.140 4.140 24 O -0.300 6.300 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.131 0.869 30 H 0.270 0.730 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -7.291 -14.134 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.047 4.047 3 N -0.138 5.138 4 C -0.441 4.441 5 H 0.127 0.873 6 C -0.163 4.163 7 N -0.484 5.484 8 Si 0.735 3.265 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.261 3.739 13 O -0.481 6.481 14 C -0.119 4.119 15 C -0.095 4.095 16 C -0.164 4.164 17 C 0.057 3.943 18 C -0.184 4.184 19 C -0.051 4.051 20 C -0.134 4.134 21 C 0.062 3.938 22 C -0.220 4.220 23 C -0.197 4.197 24 O -0.214 6.214 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.696 -7.003 -14.076 15.951 hybrid contribution -0.485 0.344 0.661 0.889 sum 2.211 -6.659 -13.415 15.139 Atomic orbital electron populations 1.22126 0.97607 0.99448 1.02069 1.22321 0.93886 0.84389 1.04109 1.43750 1.50254 1.11433 1.08351 1.19681 1.37727 0.98503 0.88159 0.87321 1.25131 0.97650 0.95864 0.97628 1.69872 1.39522 1.13238 1.25786 0.86186 0.80570 0.81158 0.78549 1.20181 1.21100 1.19128 1.17660 0.85364 0.87479 0.83356 1.90609 1.51938 1.20049 1.85483 1.20097 0.94850 0.99738 0.97208 1.21700 0.98841 0.93741 0.95208 1.20130 0.98032 1.04446 0.93749 1.19640 0.95715 0.92943 0.86031 1.20540 0.97433 1.02614 0.97808 1.20258 0.97835 0.95980 0.91036 1.21821 0.98618 0.97690 0.95270 1.22704 0.79391 0.95347 0.96327 1.22190 1.00723 0.96785 1.02278 1.21820 1.02409 1.03270 0.92178 1.86793 1.25809 1.75405 1.33436 0.91529 0.94001 0.93478 0.92947 0.85151 0.91875 0.83428 0.85683 0.85474 0.89374 0.89276 0.91491 0.90857 0.91582 0.91484 0.90478 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.73 37.16 0.32 -2.73 16 2 C 0.08 1.69 4.89 -4.04 -0.02 1.67 16 3 N -0.42 -10.80 2.68 -116.00 -0.31 -11.11 16 4 C -0.31 -8.60 9.29 -15.00 -0.14 -8.74 16 5 H 0.11 3.19 7.35 -52.48 -0.39 2.80 16 6 C 0.04 1.08 3.96 -17.45 -0.07 1.01 16 7 N -0.85 -21.11 9.70 55.50 0.54 -20.58 16 8 Si 0.91 19.99 29.66 -169.99 -5.04 14.95 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.47 12.03 7.27 -12.49 -0.09 11.94 16 13 O -0.59 -17.15 16.51 5.25 0.09 -17.06 16 14 C -0.12 -2.42 5.10 -104.92 -0.54 -2.96 16 15 C -0.08 -1.40 7.39 -39.28 -0.29 -1.69 16 16 C -0.14 -2.35 10.05 -39.36 -0.40 -2.75 16 17 C 0.10 1.65 6.95 -38.71 -0.27 1.38 16 18 C -0.18 -2.95 6.25 -104.13 -0.65 -3.60 16 19 C -0.03 -0.60 9.63 -39.31 -0.38 -0.98 16 20 C -0.10 -1.18 6.19 -26.51 -0.16 -1.34 16 21 C 0.10 1.13 1.26 -89.72 -0.11 1.02 16 22 C -0.16 -1.61 8.84 37.16 0.33 -1.28 16 23 C -0.14 -1.17 8.96 37.16 0.33 -0.84 16 24 O -0.30 -4.39 10.51 -19.73 -0.21 -4.60 16 25 H 0.07 1.45 6.39 -51.93 -0.33 1.11 16 26 H 0.04 0.80 6.45 -51.93 -0.33 0.46 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.06 4.98 -51.92 -0.26 0.80 16 29 H 0.13 3.16 5.46 -51.93 -0.28 2.87 16 30 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 31 H 0.15 2.65 3.75 -52.49 -0.20 2.45 16 32 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 33 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 35 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -30.38 326.72 -7.69 -38.07 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.55 Total: 5.28 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.13 Total: -9.89 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.23 Total: -31.68 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.12 Total: -21.66 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.04 Total: 14.95 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.38 -7.69 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335357951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.599 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds