Wall clock time and date at job start Tue Mar 31 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00030 * 2 1 4 4 O 1.21550 * 120.00049 * 174.38391 * 3 2 1 5 5 C 1.47883 * 120.00186 * 354.38362 * 3 2 1 6 6 C 1.39921 * 120.02688 * 147.34412 * 5 3 2 7 7 C 1.38333 * 120.35905 * 179.72592 * 6 5 3 8 8 C 1.37744 * 120.40983 * 359.97438 * 7 6 5 9 9 C 1.40747 * 120.04362 * 0.02562 * 8 7 6 10 10 C 1.41440 * 120.17722 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99710 * 150.22287 * 10 9 8 12 12 C 1.39935 * 120.00278 * 330.21821 * 10 9 8 13 13 N 1.30828 * 120.00011 * 344.58301 * 12 10 9 14 14 Si 1.86799 * 120.00030 * 164.57808 * 12 10 9 15 15 H 1.48501 * 109.47085 * 90.00121 * 14 12 10 16 16 H 1.48496 * 109.47077 * 210.00248 * 14 12 10 17 17 H 1.48506 * 109.47120 * 330.00202 * 14 12 10 18 18 C 1.38994 * 120.02249 * 327.06684 * 5 3 2 19 19 C 1.46499 * 120.00105 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.52611 * 180.13011 * 19 2 1 21 21 C 1.53171 * 109.52303 * 60.00076 * 19 2 1 22 22 C 1.53174 * 109.03903 * 183.11703 * 21 19 2 23 23 C 1.53094 * 109.16522 * 56.97864 * 22 21 19 24 24 O 1.42906 * 109.41629 * 302.39516 * 23 22 21 25 25 C 1.42911 * 114.09710 * 61.15176 * 24 23 22 26 26 H 1.08994 * 109.46851 * 89.38491 * 1 2 3 27 27 H 1.08995 * 109.47094 * 209.38719 * 1 2 3 28 28 H 1.09000 * 109.47224 * 329.38772 * 1 2 3 29 29 H 1.08001 * 119.81906 * 359.69766 * 6 5 3 30 30 H 1.07999 * 119.79228 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.97872 * 180.02562 * 8 7 6 32 32 H 0.97001 * 120.00091 * 179.97438 * 13 12 10 33 33 H 1.07995 * 120.20640 * 0.25390 * 18 5 3 34 34 H 1.09008 * 109.54132 * 302.98325 * 21 19 2 35 35 H 1.09001 * 109.54880 * 63.24472 * 21 19 2 36 36 H 1.09004 * 109.52683 * 176.88105 * 22 21 19 37 37 H 1.08996 * 109.52487 * 297.01171 * 22 21 19 38 38 H 1.09004 * 109.48091 * 62.37427 * 23 22 21 39 39 H 1.08998 * 109.48740 * 182.40870 * 23 22 21 40 40 H 1.09000 * 109.48057 * 178.85835 * 25 24 23 41 41 H 1.08999 * 109.47369 * 58.83023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3500 1.1697 0.1030 5 6 1.4049 2.4448 -0.1253 6 6 1.8831 3.5929 0.5158 7 6 1.2050 4.7929 0.3985 8 6 0.0519 4.8719 -0.3508 9 6 -0.4444 3.7276 -1.0029 10 6 -1.6285 3.8054 -1.7726 11 1 -1.7651 3.1509 -2.6208 12 6 -2.6231 4.7302 -1.4350 13 7 -2.6100 5.3052 -0.2599 14 14 -3.9692 5.1438 -2.6623 15 1 -5.1142 4.2175 -2.4719 16 1 -4.4223 6.5415 -2.4477 17 1 -3.4413 5.0010 -4.0430 18 6 0.2425 2.5075 -0.8848 19 6 2.1975 -1.2687 -0.0006 20 1 3.2694 -1.0705 0.0019 21 6 1.8284 -2.0724 -1.2512 22 6 2.5395 -3.4281 -1.2018 23 6 2.1513 -4.1525 0.0898 24 8 2.4937 -3.3377 1.2128 25 6 1.8226 -2.0764 1.2447 26 1 -0.3633 0.0110 -1.0276 27 1 -0.3633 -0.8954 0.5043 28 1 -0.3634 0.8844 0.5233 29 1 2.7863 3.5418 1.1057 30 1 1.5821 5.6733 0.8976 31 1 -0.4717 5.8125 -0.4379 32 1 -3.2992 5.9465 -0.0261 33 1 -0.1302 1.6240 -1.3817 34 1 0.7497 -2.2272 -1.2799 35 1 2.1436 -1.5275 -2.1411 36 1 2.2390 -4.0286 -2.0605 37 1 3.6184 -3.2746 -1.2243 38 1 1.0779 -4.3418 0.0920 39 1 2.6876 -5.0995 0.1509 40 1 2.1220 -1.5278 2.1377 41 1 0.7448 -2.2386 1.2619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336493267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:23 Heat of formation + Delta-G solvation = -61.435740 kcal Electronic energy + Delta-G solvation = -23083.035611 eV Core-core repulsion = 19734.527075 eV Total energy + Delta-G solvation = -3348.508536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21842 -38.79740 -37.08147 -35.43690 -33.71038 -33.08893 -30.96831 -29.96402 -29.02834 -26.71812 -25.32649 -25.17144 -23.87938 -21.96213 -20.85567 -20.09260 -19.14926 -17.35905 -16.66812 -16.37500 -15.95777 -15.66018 -15.29083 -14.96885 -14.79477 -14.56081 -13.93847 -13.52625 -13.26135 -13.17940 -12.83616 -12.81704 -12.60601 -12.26923 -11.90878 -11.72351 -11.63093 -11.26440 -11.22167 -11.05613 -11.04660 -10.74598 -10.55448 -10.51508 -10.23632 -9.75788 -9.56651 -9.27702 -9.10219 -8.31929 -7.64341 -7.52269 -6.84034 -4.48512 2.19966 2.70253 3.02679 3.04818 3.10247 3.19284 3.63401 3.86170 3.88177 4.55083 4.62125 4.71121 4.78491 4.83313 5.06729 5.23953 5.36236 5.37377 5.48218 5.50708 5.57425 5.62535 5.75823 5.78946 5.84695 6.07135 6.11484 6.17269 6.22595 6.36347 6.70705 6.75819 6.86162 6.96072 7.06646 7.13536 7.31495 7.57616 7.72382 7.86291 7.90794 8.05236 8.45994 8.69656 8.75786 8.79523 10.13112 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.004060 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.027768 B = 6894.798061 C = 7717.508114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.569 3.431 4 O -0.553 6.553 5 C -0.117 4.117 6 C -0.174 4.174 7 C -0.116 4.116 8 C -0.132 4.132 9 C 0.103 3.897 10 C -0.469 4.469 11 H 0.078 0.922 12 C 0.078 3.922 13 N -0.800 5.800 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.190 4.190 19 C 0.108 3.892 20 H 0.107 0.893 21 C -0.132 4.132 22 C -0.152 4.152 23 C 0.057 3.943 24 O -0.379 6.379 25 C 0.054 3.946 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.281 0.719 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -12.466 -0.351 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C 0.361 3.639 4 O -0.432 6.432 5 C -0.120 4.120 6 C -0.195 4.195 7 C -0.134 4.134 8 C -0.152 4.152 9 C 0.101 3.899 10 C -0.499 4.499 11 H 0.096 0.904 12 C -0.140 4.140 13 N -0.426 5.426 14 Si 0.731 3.269 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.210 4.210 19 C 0.004 3.996 20 H 0.125 0.875 21 C -0.170 4.170 22 C -0.191 4.191 23 C -0.020 4.020 24 O -0.296 6.296 25 C -0.023 4.023 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.344 -12.369 0.003 12.589 hybrid contribution -1.054 0.374 -0.753 1.348 sum 1.291 -11.995 -0.750 12.087 Atomic orbital electron populations 1.22151 0.79112 1.03259 1.02095 1.47690 1.07127 1.04891 1.74819 1.19020 0.86860 0.83935 0.74071 1.90664 1.14463 1.87471 1.50576 1.19260 0.97232 0.91737 1.03788 1.20421 1.00993 0.92371 1.05677 1.20671 0.96500 0.96065 1.00164 1.21461 0.94805 0.98955 0.99966 1.17532 0.91867 0.89891 0.90646 1.19475 1.00452 1.17509 1.12448 0.90395 1.25841 0.98955 0.94170 0.94990 1.69783 1.32220 1.22077 1.18485 0.86338 0.80460 0.78418 0.81678 1.19519 1.20125 1.18516 1.21585 0.96904 0.97906 1.04642 1.21581 0.99396 0.83762 0.94857 0.87522 1.21967 1.00908 0.95597 0.98563 1.22187 1.01808 0.96521 0.98544 1.22621 0.99796 0.93880 0.85656 1.87966 1.68215 1.28363 1.45077 1.22932 0.96631 0.84192 0.98587 0.92174 0.92311 0.88944 0.88388 0.88584 0.86541 0.90804 0.87285 0.91334 0.90904 0.90595 0.90787 0.93129 0.88836 0.88465 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 7.82 59.85 0.47 1.59 16 2 N -0.61 -10.16 2.77 -174.88 -0.48 -10.64 16 3 C 0.57 11.81 7.39 -12.31 -0.09 11.72 16 4 O -0.55 -12.80 16.11 5.32 0.09 -12.72 16 5 C -0.12 -2.62 5.23 -105.04 -0.55 -3.17 16 6 C -0.17 -3.97 9.60 -38.92 -0.37 -4.34 16 7 C -0.12 -2.62 10.01 -39.73 -0.40 -3.02 16 8 C -0.13 -3.25 8.65 -38.81 -0.34 -3.59 16 9 C 0.10 2.55 5.51 -106.87 -0.59 1.96 16 10 C -0.47 -11.59 9.04 -37.73 -0.34 -11.93 16 11 H 0.08 1.85 7.89 -52.49 -0.41 1.43 16 12 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 13 N -0.80 -19.63 11.18 55.55 0.62 -19.01 16 14 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 C -0.19 -4.29 7.43 -38.44 -0.29 -4.57 16 19 C 0.11 1.55 2.72 -67.79 -0.18 1.37 16 20 H 0.11 1.78 6.92 -51.93 -0.36 1.42 16 21 C -0.13 -1.55 5.36 -26.55 -0.14 -1.70 16 22 C -0.15 -1.46 6.14 -26.59 -0.16 -1.62 16 23 C 0.06 0.54 6.84 37.21 0.25 0.80 16 24 O -0.38 -4.80 10.77 -35.23 -0.38 -5.18 16 25 C 0.05 0.69 6.15 37.21 0.23 0.92 16 26 H 0.06 0.86 6.65 -51.93 -0.35 0.51 16 27 H 0.06 0.69 6.37 -51.93 -0.33 0.36 16 28 H 0.09 1.56 6.08 -51.93 -0.32 1.25 16 29 H 0.10 2.15 7.96 -52.49 -0.42 1.73 16 30 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.12 2.94 6.46 -52.48 -0.34 2.60 16 32 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 33 H 0.11 2.23 5.09 -52.49 -0.27 1.97 16 34 H 0.07 0.74 7.58 -51.92 -0.39 0.35 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.63 6.56 -51.93 -0.34 0.29 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -28.13 327.54 -8.46 -36.59 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.62 Total: 7.12 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.59 Total: -13.83 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.14 Total: -29.65 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.29 Total: -17.90 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.13 -8.46 -36.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336493267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.844 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds