Wall clock time and date at job start Tue Mar 31 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00030 * 2 1 4 4 O 1.21550 * 120.00049 * 174.38391 * 3 2 1 5 5 C 1.47883 * 120.00186 * 354.38362 * 3 2 1 6 6 C 1.39921 * 120.02688 * 147.34412 * 5 3 2 7 7 C 1.38333 * 120.35905 * 179.72592 * 6 5 3 8 8 C 1.37744 * 120.40983 * 359.97438 * 7 6 5 9 9 C 1.40747 * 120.04362 * 0.02562 * 8 7 6 10 10 C 1.41440 * 120.17722 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99710 * 150.22287 * 10 9 8 12 12 C 1.39935 * 120.00278 * 330.21821 * 10 9 8 13 13 N 1.30828 * 120.00011 * 344.58301 * 12 10 9 14 14 Si 1.86799 * 120.00030 * 164.57808 * 12 10 9 15 15 H 1.48501 * 109.47085 * 90.00121 * 14 12 10 16 16 H 1.48496 * 109.47077 * 210.00248 * 14 12 10 17 17 H 1.48506 * 109.47120 * 330.00202 * 14 12 10 18 18 C 1.38994 * 120.02249 * 327.06684 * 5 3 2 19 19 C 1.46499 * 120.00105 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.52611 * 180.13011 * 19 2 1 21 21 C 1.53171 * 109.52303 * 60.00076 * 19 2 1 22 22 C 1.53174 * 109.03903 * 183.11703 * 21 19 2 23 23 C 1.53094 * 109.16522 * 56.97864 * 22 21 19 24 24 O 1.42906 * 109.41629 * 302.39516 * 23 22 21 25 25 C 1.42911 * 114.09710 * 61.15176 * 24 23 22 26 26 H 1.08994 * 109.46851 * 89.38491 * 1 2 3 27 27 H 1.08995 * 109.47094 * 209.38719 * 1 2 3 28 28 H 1.09000 * 109.47224 * 329.38772 * 1 2 3 29 29 H 1.08001 * 119.81906 * 359.69766 * 6 5 3 30 30 H 1.07999 * 119.79228 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.97872 * 180.02562 * 8 7 6 32 32 H 0.97001 * 120.00091 * 179.97438 * 13 12 10 33 33 H 1.07995 * 120.20640 * 0.25390 * 18 5 3 34 34 H 1.09008 * 109.54132 * 302.98325 * 21 19 2 35 35 H 1.09001 * 109.54880 * 63.24472 * 21 19 2 36 36 H 1.09004 * 109.52683 * 176.88105 * 22 21 19 37 37 H 1.08996 * 109.52487 * 297.01171 * 22 21 19 38 38 H 1.09004 * 109.48091 * 62.37427 * 23 22 21 39 39 H 1.08998 * 109.48740 * 182.40870 * 23 22 21 40 40 H 1.09000 * 109.48057 * 178.85835 * 25 24 23 41 41 H 1.08999 * 109.47369 * 58.83023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3500 1.1697 0.1030 5 6 1.4049 2.4448 -0.1253 6 6 1.8831 3.5929 0.5158 7 6 1.2050 4.7929 0.3985 8 6 0.0519 4.8719 -0.3508 9 6 -0.4444 3.7276 -1.0029 10 6 -1.6285 3.8054 -1.7726 11 1 -1.7651 3.1509 -2.6208 12 6 -2.6231 4.7302 -1.4350 13 7 -2.6100 5.3052 -0.2599 14 14 -3.9692 5.1438 -2.6623 15 1 -5.1142 4.2175 -2.4719 16 1 -4.4223 6.5415 -2.4477 17 1 -3.4413 5.0010 -4.0430 18 6 0.2425 2.5075 -0.8848 19 6 2.1975 -1.2687 -0.0006 20 1 3.2694 -1.0705 0.0019 21 6 1.8284 -2.0724 -1.2512 22 6 2.5395 -3.4281 -1.2018 23 6 2.1513 -4.1525 0.0898 24 8 2.4937 -3.3377 1.2128 25 6 1.8226 -2.0764 1.2447 26 1 -0.3633 0.0110 -1.0276 27 1 -0.3633 -0.8954 0.5043 28 1 -0.3634 0.8844 0.5233 29 1 2.7863 3.5418 1.1057 30 1 1.5821 5.6733 0.8976 31 1 -0.4717 5.8125 -0.4379 32 1 -3.2992 5.9465 -0.0261 33 1 -0.1302 1.6240 -1.3817 34 1 0.7497 -2.2272 -1.2799 35 1 2.1436 -1.5275 -2.1411 36 1 2.2390 -4.0286 -2.0605 37 1 3.6184 -3.2746 -1.2243 38 1 1.0779 -4.3418 0.0920 39 1 2.6876 -5.0995 0.1509 40 1 2.1220 -1.5278 2.1377 41 1 0.7448 -2.2386 1.2619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336493267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:22 Heat of formation + Delta-G solvation = -76.847864 kcal Electronic energy + Delta-G solvation = -23083.703931 eV Core-core repulsion = 19734.527075 eV Total energy + Delta-G solvation = -3349.176856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56732 -40.04666 -38.80355 -36.81493 -35.50028 -34.10060 -32.29282 -31.79082 -30.47142 -28.05197 -27.14258 -26.09042 -25.15644 -23.35715 -22.62445 -21.30238 -20.58035 -19.02897 -17.96874 -17.62100 -17.33411 -17.04855 -16.62798 -16.52432 -16.22895 -15.68772 -15.37046 -14.89920 -14.71535 -14.50339 -14.38420 -14.07650 -13.77543 -13.60958 -13.52423 -13.28517 -12.83136 -12.71036 -12.63716 -12.51160 -12.25355 -12.15703 -11.99276 -11.91228 -11.46681 -11.30957 -11.04527 -10.81335 -10.67945 -9.67605 -9.43932 -9.35778 -8.62127 -6.36272 0.42758 0.93659 1.43175 1.48823 1.56678 1.83760 1.97439 2.24272 2.76331 2.95307 3.51423 3.65250 3.77098 3.84507 3.91129 3.95973 4.11552 4.26466 4.37473 4.43252 4.52073 4.61236 4.61820 4.67423 4.76862 4.85986 4.90893 4.98409 4.99694 5.02413 5.12506 5.15066 5.25409 5.31390 5.42878 5.58252 5.79145 5.96007 6.02976 6.17420 6.20031 6.29865 6.60827 6.91808 6.93374 7.11266 8.37036 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.004060 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.027768 B = 6894.798061 C = 7717.508114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.564 3.436 4 O -0.586 6.586 5 C -0.122 4.122 6 C -0.188 4.188 7 C -0.113 4.113 8 C -0.156 4.156 9 C 0.078 3.922 10 C -0.496 4.496 11 H 0.082 0.918 12 C 0.040 3.960 13 N -0.829 5.829 14 Si 0.978 3.022 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.260 1.260 18 C -0.184 4.184 19 C 0.105 3.895 20 H 0.077 0.923 21 C -0.128 4.128 22 C -0.147 4.147 23 C 0.051 3.949 24 O -0.396 6.396 25 C 0.062 3.938 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.288 0.712 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -14.494 -1.147 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.356 3.644 4 O -0.467 6.467 5 C -0.125 4.125 6 C -0.209 4.209 7 C -0.132 4.132 8 C -0.176 4.176 9 C 0.076 3.924 10 C -0.525 4.525 11 H 0.100 0.900 12 C -0.175 4.175 13 N -0.455 5.455 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.184 1.184 18 C -0.204 4.204 19 C 0.002 3.998 20 H 0.095 0.905 21 C -0.166 4.166 22 C -0.185 4.185 23 C -0.025 4.025 24 O -0.314 6.314 25 C -0.016 4.016 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.910 -14.438 -0.788 14.488 hybrid contribution -0.563 0.920 -0.467 1.175 sum 0.347 -13.518 -1.254 13.580 Atomic orbital electron populations 1.22239 0.77599 1.04056 1.02835 1.47697 1.08026 1.04600 1.72821 1.18842 0.86420 0.84693 0.74467 1.90643 1.15618 1.88005 1.52467 1.19515 0.97130 0.92669 1.03160 1.20610 1.01345 0.92755 1.06145 1.20870 0.95802 0.96957 0.99545 1.21435 0.95810 0.98628 1.01727 1.17877 0.92606 0.90708 0.91238 1.19740 1.01028 1.18802 1.12951 0.89981 1.26640 1.00949 0.93461 0.96424 1.69841 1.33271 1.22446 1.19985 0.85261 0.77544 0.78314 0.78981 1.18554 1.19655 1.18404 1.21742 0.96565 0.97897 1.04205 1.21749 0.97560 0.83051 0.97471 0.90472 1.21952 1.02206 0.96164 0.96277 1.22179 1.00948 0.95487 0.99882 1.22892 1.01313 0.93973 0.84324 1.87956 1.68670 1.28173 1.46574 1.22795 0.97695 0.84200 0.96921 0.91260 0.88542 0.91245 0.87933 0.86415 0.87877 0.90159 0.85442 0.89583 0.92183 0.87934 0.91838 0.91328 0.86811 0.89780 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.04 7.82 127.77 1.00 3.04 16 2 N -0.60 -19.45 2.77 -825.48 -2.28 -21.73 16 3 C 0.56 23.67 7.39 86.80 0.64 24.31 16 4 O -0.59 -27.77 16.11 -3.87 -0.06 -27.83 16 5 C -0.12 -5.50 5.23 -20.13 -0.11 -5.61 16 6 C -0.19 -8.72 9.60 22.70 0.22 -8.51 16 7 C -0.11 -5.24 10.01 22.18 0.22 -5.02 16 8 C -0.16 -7.89 8.65 22.77 0.20 -7.69 16 9 C 0.08 3.93 5.51 -21.32 -0.12 3.81 16 10 C -0.50 -24.62 9.04 23.47 0.21 -24.40 16 11 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 12 C 0.04 1.89 5.15 85.25 0.44 2.33 16 13 N -0.83 -41.03 11.18 21.82 0.24 -40.79 16 14 Si 0.98 35.83 29.59 68.60 2.03 37.86 16 15 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 16 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 18 C -0.18 -8.35 7.43 23.01 0.17 -8.18 16 19 C 0.11 2.91 2.72 45.08 0.12 3.03 16 20 H 0.08 2.62 6.92 -2.39 -0.02 2.61 16 21 C -0.13 -2.72 5.36 30.71 0.16 -2.56 16 22 C -0.15 -2.41 6.14 30.68 0.19 -2.22 16 23 C 0.05 0.80 6.84 72.01 0.49 1.29 16 24 O -0.40 -9.21 10.77 -148.98 -1.60 -10.81 16 25 C 0.06 1.47 6.15 72.01 0.44 1.91 16 26 H 0.07 1.81 6.65 -2.39 -0.02 1.80 16 27 H 0.10 1.94 6.37 -2.39 -0.02 1.92 16 28 H 0.07 2.29 6.08 -2.39 -0.01 2.27 16 29 H 0.10 4.58 7.96 -2.91 -0.02 4.56 16 30 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.10 5.39 6.46 -2.91 -0.02 5.37 16 32 H 0.29 12.96 8.30 -92.71 -0.77 12.19 16 33 H 0.13 5.15 5.09 -2.91 -0.01 5.13 16 34 H 0.09 1.55 7.58 -2.38 -0.02 1.53 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 1.48 6.56 -2.39 -0.02 1.46 16 Total: -1.00 -61.98 327.54 3.65 -58.33 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 1.04 Total: 29.42 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.29 Total: -24.46 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -2.04 Total: -62.52 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.67 Total: -38.64 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -61.98 3.65 -58.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336493267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.513 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds