Wall clock time and date at job start Tue Mar 31 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00347 * 2 1 4 4 C 1.52995 * 109.47092 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.57806 * 300.16046 * 4 3 2 6 6 C 1.53123 * 109.52352 * 180.02562 * 4 3 2 7 7 C 1.53036 * 109.27788 * 182.44354 * 6 4 3 8 8 N 1.46846 * 109.52384 * 59.18000 * 7 6 4 9 9 C 1.46903 * 110.99717 * 174.15896 * 8 7 6 10 10 C 1.53006 * 109.46708 * 170.00071 * 9 8 7 11 11 C 1.52995 * 109.46836 * 180.02562 * 10 9 8 12 12 S 1.81003 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.76197 * 100.00053 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99894 * 359.97438 * 13 12 11 15 15 C 1.38795 * 120.00326 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00583 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99705 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47114 * 90.00273 * 17 15 13 19 19 H 1.48500 * 109.47405 * 210.00066 * 17 15 13 20 20 H 1.48501 * 109.47254 * 330.00187 * 17 15 13 21 21 C 1.46842 * 111.19700 * 298.25435 * 8 7 6 22 22 C 1.53041 * 109.52407 * 61.74724 * 21 8 7 23 23 H 1.08994 * 109.47660 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47088 * 300.00016 * 1 2 3 25 25 H 1.08999 * 109.47268 * 59.99291 * 1 2 3 26 26 H 1.09007 * 109.46766 * 60.00095 * 3 2 1 27 27 H 1.08995 * 109.47288 * 300.00546 * 3 2 1 28 28 H 0.96703 * 113.99483 * 59.84286 * 5 4 3 29 29 H 1.09000 * 109.50367 * 62.49899 * 6 4 3 30 30 H 1.09006 * 109.50264 * 302.38238 * 6 4 3 31 31 H 1.08999 * 109.46075 * 179.19317 * 7 6 4 32 32 H 1.08998 * 109.46309 * 299.16289 * 7 6 4 33 33 H 1.08996 * 109.47016 * 289.99775 * 9 8 7 34 34 H 1.08996 * 109.47351 * 50.00035 * 9 8 7 35 35 H 1.08999 * 109.46912 * 300.00107 * 10 9 8 36 36 H 1.08996 * 109.47244 * 59.99898 * 10 9 8 37 37 H 1.08999 * 109.47333 * 299.99696 * 11 10 9 38 38 H 1.08996 * 109.47412 * 59.99849 * 11 10 9 39 39 H 0.96995 * 120.00439 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.46447 * 181.75636 * 21 8 7 41 41 H 1.08994 * 109.46873 * 301.72670 * 21 8 7 42 42 H 1.08997 * 109.50282 * 60.75542 * 22 21 8 43 43 H 1.08999 * 109.50511 * 180.87834 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9589 0.4725 1.1651 6 6 4.1596 2.5827 0.0013 7 6 5.6835 2.4558 -0.0597 8 7 6.0672 1.7295 -1.2769 9 6 7.5270 1.7091 -1.4396 10 6 7.9011 0.7437 -2.5662 11 6 9.4215 0.7219 -2.7352 12 16 9.8642 -0.4206 -4.0674 13 6 11.6179 -0.2522 -4.0450 14 1 12.0873 0.4151 -3.3372 15 6 12.3962 -0.9761 -4.9375 16 7 13.7064 -0.8507 -4.9204 17 14 11.5843 -2.1297 -6.1621 18 1 11.2801 -1.3892 -7.4129 19 1 12.5030 -3.2564 -6.4649 20 1 10.3245 -2.6604 -5.5821 21 6 5.5185 0.3675 -1.2777 22 6 3.9896 0.4320 -1.2532 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8901 27 1 1.6887 1.8464 -0.8899 28 1 3.6005 -0.4233 1.2302 29 1 3.8743 3.1082 0.9127 30 1 3.8059 3.1396 -0.8664 31 1 6.1304 3.4499 -0.0738 32 1 6.0378 1.9109 0.8153 33 1 7.8790 2.7105 -1.6873 34 1 7.9917 1.3803 -0.5101 35 1 7.5490 -0.2576 -2.3184 36 1 7.4365 1.0726 -3.4957 37 1 9.7740 1.7232 -2.9828 38 1 9.8858 0.3929 -1.8056 39 1 14.2502 -1.3563 -5.5444 40 1 5.8455 -0.1553 -2.1766 41 1 5.8735 -0.1677 -0.3971 42 1 3.6332 0.9550 -2.1406 43 1 3.5829 -0.5792 -1.2381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336704655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:20 Heat of formation + Delta-G solvation = -108.763727 kcal Electronic energy + Delta-G solvation = -21138.980542 eV Core-core repulsion = 17923.863662 eV Total energy + Delta-G solvation = -3215.116880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13835 -38.08633 -36.48764 -33.76196 -32.41698 -31.58647 -31.02551 -28.41789 -26.49033 -25.69539 -24.59042 -23.70068 -22.19202 -20.57309 -19.90376 -17.46437 -16.96942 -16.79540 -16.53941 -16.03644 -15.27992 -15.17072 -14.95036 -14.74057 -14.46965 -14.19543 -13.77213 -13.70593 -13.05584 -12.82734 -12.57915 -12.52205 -12.25867 -11.90347 -11.78131 -11.60427 -11.43425 -11.35584 -11.28033 -11.02714 -10.98530 -10.53790 -10.36085 -10.15274 -10.10225 -9.88397 -9.71149 -8.98431 -8.53530 -8.26211 -6.91644 -6.26178 -3.98173 3.02962 3.25308 3.31883 3.47233 3.57863 3.85841 4.04459 4.33721 4.43174 4.54061 4.66272 4.82816 4.86605 4.90405 5.02328 5.05431 5.07551 5.12484 5.21146 5.24011 5.31504 5.36248 5.42207 5.50517 5.58722 5.63269 5.74178 5.79860 5.83954 5.90821 5.96515 6.10164 6.12606 6.26220 6.51495 6.65424 6.66254 7.10391 7.11966 7.45998 7.97654 8.46718 9.19773 10.83349 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032026 B = 0.002755 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.072560 B =10160.919873 C =10764.004944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.036 3.964 4 C 0.138 3.862 5 O -0.555 6.555 6 C -0.100 4.100 7 C 0.060 3.940 8 N -0.539 5.539 9 C 0.061 3.939 10 C -0.104 4.104 11 C -0.081 4.081 12 S -0.217 6.217 13 C -0.501 4.501 14 H 0.088 0.912 15 C 0.091 3.909 16 N -0.883 5.883 17 Si 0.862 3.138 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.238 1.238 21 C 0.050 3.950 22 C -0.136 4.136 23 H 0.087 0.913 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.381 0.619 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.351 4.987 11.014 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.041 4.041 4 C 0.097 3.903 5 O -0.361 6.361 6 C -0.138 4.138 7 C -0.068 4.068 8 N -0.263 5.263 9 C -0.068 4.068 10 C -0.143 4.143 11 C -0.230 4.230 12 S 0.011 5.989 13 C -0.649 4.649 14 H 0.106 0.894 15 C -0.117 4.117 16 N -0.519 5.519 17 Si 0.687 3.313 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.162 1.162 21 C -0.078 4.078 22 C -0.174 4.174 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.229 0.771 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.586 4.928 9.985 28.824 hybrid contribution 0.517 -0.429 0.714 0.980 sum -26.069 4.499 10.699 28.536 Atomic orbital electron populations 1.22746 0.80699 1.02887 1.00007 1.87796 1.20018 1.27740 1.95441 1.23326 0.94726 0.85167 1.00921 1.21273 0.89604 0.93345 0.86092 1.86485 1.74543 1.31567 1.43498 1.21538 0.95816 0.93720 1.02701 1.21948 0.94658 0.98859 0.91356 1.62045 1.11251 1.16009 1.37041 1.22147 0.86306 1.00526 0.97842 1.21498 0.94700 0.99267 0.98790 1.23013 0.97017 1.01966 1.01045 1.84131 1.10792 1.57538 1.46426 1.22127 0.87307 1.31366 1.24056 0.89431 1.24803 0.94332 0.96012 0.96590 1.69936 1.03870 1.41124 1.37016 0.86661 0.81146 0.81192 0.82281 1.19375 1.20156 1.16175 1.22162 0.93932 0.89917 1.01756 1.22194 0.96128 1.01249 0.97849 0.89485 0.94091 0.93986 0.92657 0.92368 0.77133 0.90868 0.89731 0.90719 0.93882 0.90571 0.94785 0.91299 0.90674 0.91361 0.91573 0.92003 0.89565 0.94253 0.90453 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.31 9.59 -44.82 -0.43 -3.74 16 3 C 0.04 0.28 5.06 37.16 0.19 0.47 16 4 C 0.14 1.27 0.80 -90.50 -0.07 1.20 16 5 O -0.55 -5.71 11.84 -44.82 -0.53 -6.25 16 6 C -0.10 -0.90 5.11 -26.65 -0.14 -1.04 16 7 C 0.06 0.65 5.29 -3.83 -0.02 0.63 16 8 N -0.54 -6.64 4.81 -234.67 -1.13 -7.77 16 9 C 0.06 0.82 5.27 -3.82 -0.02 0.80 16 10 C -0.10 -1.65 4.47 -26.73 -0.12 -1.77 16 11 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 12 S -0.22 -5.36 19.41 -107.50 -2.09 -7.45 16 13 C -0.50 -14.74 10.04 30.94 0.31 -14.43 16 14 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 15 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 16 N -0.88 -27.06 13.97 55.49 0.78 -26.28 16 17 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.24 -5.89 6.74 56.52 0.38 -5.50 16 21 C 0.05 0.60 4.71 -3.83 -0.02 0.58 16 22 C -0.14 -1.37 4.90 -26.65 -0.13 -1.50 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.38 3.16 8.57 45.56 0.39 3.55 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.04 0.52 7.76 -51.93 -0.40 0.12 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 1.09 6.21 -51.93 -0.32 0.77 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 38 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 39 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.09 1.10 5.81 -51.93 -0.30 0.79 16 41 H 0.04 0.51 7.76 -51.93 -0.40 0.10 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.75 7.77 -51.93 -0.40 0.34 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -32.05 350.27 -8.56 -40.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.93 Total: 1.06 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 1.21 Total: -12.55 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: -0.35 Total: -34.05 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.96 Total: -9.98 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.09 Total: -7.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.05 -8.56 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336704655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.151 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds