Wall clock time and date at job start Tue Mar 31 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00347 * 2 1 4 4 C 1.52995 * 109.47092 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.57806 * 300.16046 * 4 3 2 6 6 C 1.53123 * 109.52352 * 180.02562 * 4 3 2 7 7 C 1.53036 * 109.27788 * 182.44354 * 6 4 3 8 8 N 1.46846 * 109.52384 * 59.18000 * 7 6 4 9 9 C 1.46903 * 110.99717 * 174.15896 * 8 7 6 10 10 C 1.53006 * 109.46708 * 170.00071 * 9 8 7 11 11 C 1.52995 * 109.46836 * 180.02562 * 10 9 8 12 12 S 1.81003 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.76197 * 100.00053 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99894 * 359.97438 * 13 12 11 15 15 C 1.38795 * 120.00326 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00583 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99705 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47114 * 90.00273 * 17 15 13 19 19 H 1.48500 * 109.47405 * 210.00066 * 17 15 13 20 20 H 1.48501 * 109.47254 * 330.00187 * 17 15 13 21 21 C 1.46842 * 111.19700 * 298.25435 * 8 7 6 22 22 C 1.53041 * 109.52407 * 61.74724 * 21 8 7 23 23 H 1.08994 * 109.47660 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47088 * 300.00016 * 1 2 3 25 25 H 1.08999 * 109.47268 * 59.99291 * 1 2 3 26 26 H 1.09007 * 109.46766 * 60.00095 * 3 2 1 27 27 H 1.08995 * 109.47288 * 300.00546 * 3 2 1 28 28 H 0.96703 * 113.99483 * 59.84286 * 5 4 3 29 29 H 1.09000 * 109.50367 * 62.49899 * 6 4 3 30 30 H 1.09006 * 109.50264 * 302.38238 * 6 4 3 31 31 H 1.08999 * 109.46075 * 179.19317 * 7 6 4 32 32 H 1.08998 * 109.46309 * 299.16289 * 7 6 4 33 33 H 1.08996 * 109.47016 * 289.99775 * 9 8 7 34 34 H 1.08996 * 109.47351 * 50.00035 * 9 8 7 35 35 H 1.08999 * 109.46912 * 300.00107 * 10 9 8 36 36 H 1.08996 * 109.47244 * 59.99898 * 10 9 8 37 37 H 1.08999 * 109.47333 * 299.99696 * 11 10 9 38 38 H 1.08996 * 109.47412 * 59.99849 * 11 10 9 39 39 H 0.96995 * 120.00439 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.46447 * 181.75636 * 21 8 7 41 41 H 1.08994 * 109.46873 * 301.72670 * 21 8 7 42 42 H 1.08997 * 109.50282 * 60.75542 * 22 21 8 43 43 H 1.08999 * 109.50511 * 180.87834 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9589 0.4725 1.1651 6 6 4.1596 2.5827 0.0013 7 6 5.6835 2.4558 -0.0597 8 7 6.0672 1.7295 -1.2769 9 6 7.5270 1.7091 -1.4396 10 6 7.9011 0.7437 -2.5662 11 6 9.4215 0.7219 -2.7352 12 16 9.8642 -0.4206 -4.0674 13 6 11.6179 -0.2522 -4.0450 14 1 12.0873 0.4151 -3.3372 15 6 12.3962 -0.9761 -4.9375 16 7 13.7064 -0.8507 -4.9204 17 14 11.5843 -2.1297 -6.1621 18 1 11.2801 -1.3892 -7.4129 19 1 12.5030 -3.2564 -6.4649 20 1 10.3245 -2.6604 -5.5821 21 6 5.5185 0.3675 -1.2777 22 6 3.9896 0.4320 -1.2532 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8901 27 1 1.6887 1.8464 -0.8899 28 1 3.6005 -0.4233 1.2302 29 1 3.8743 3.1082 0.9127 30 1 3.8059 3.1396 -0.8664 31 1 6.1304 3.4499 -0.0738 32 1 6.0378 1.9109 0.8153 33 1 7.8790 2.7105 -1.6873 34 1 7.9917 1.3803 -0.5101 35 1 7.5490 -0.2576 -2.3184 36 1 7.4365 1.0726 -3.4957 37 1 9.7740 1.7232 -2.9828 38 1 9.8858 0.3929 -1.8056 39 1 14.2502 -1.3563 -5.5444 40 1 5.8455 -0.1553 -2.1766 41 1 5.8735 -0.1677 -0.3971 42 1 3.6332 0.9550 -2.1406 43 1 3.5829 -0.5792 -1.2381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336704655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:20 Heat of formation + Delta-G solvation = -132.148141 kcal Electronic energy + Delta-G solvation = -21139.994566 eV Core-core repulsion = 17923.863662 eV Total energy + Delta-G solvation = -3216.130904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92089 -38.81455 -37.30065 -34.85401 -34.68471 -32.55613 -31.87758 -29.18074 -27.98651 -27.12964 -25.65134 -24.61206 -23.09366 -21.70645 -20.74281 -19.61429 -17.70032 -17.46307 -17.32112 -17.10079 -16.73746 -16.40130 -16.20563 -15.75751 -15.63137 -15.20595 -14.99427 -14.81530 -14.37929 -14.01486 -13.79587 -13.50921 -13.30376 -13.17705 -13.02736 -12.86579 -12.65492 -12.36485 -12.34429 -12.25950 -12.08791 -11.98080 -11.69640 -11.56146 -11.23694 -11.16671 -10.71023 -10.63337 -10.53444 -9.26429 -8.99651 -8.52269 -6.23738 1.12077 1.32051 1.47705 1.73588 2.24702 2.67671 2.72020 2.85581 2.91505 3.30437 3.73135 3.79440 3.92923 3.97377 4.12972 4.19529 4.31234 4.33904 4.39758 4.45077 4.52018 4.54617 4.57295 4.60584 4.66598 4.71170 4.78911 4.84974 4.86835 4.94644 4.98539 5.09358 5.14343 5.21190 5.24014 5.32342 5.69334 6.08093 6.09603 6.15523 6.16496 6.80064 6.91602 8.60886 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032026 B = 0.002755 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.072560 B =10160.919873 C =10764.004944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.040 3.960 4 C 0.136 3.864 5 O -0.569 6.569 6 C -0.098 4.098 7 C 0.059 3.941 8 N -0.538 5.538 9 C 0.068 3.932 10 C -0.090 4.090 11 C -0.069 4.069 12 S -0.219 6.219 13 C -0.523 4.523 14 H 0.050 0.950 15 C 0.036 3.964 16 N -0.923 5.923 17 Si 0.927 3.073 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.229 1.229 21 C 0.050 3.950 22 C -0.129 4.129 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.387 0.613 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.277 0.723 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.080 0.920 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.928 5.038 10.771 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.037 4.037 4 C 0.096 3.904 5 O -0.377 6.377 6 C -0.136 4.136 7 C -0.069 4.069 8 N -0.263 5.263 9 C -0.061 4.061 10 C -0.128 4.128 11 C -0.218 4.218 12 S 0.009 5.991 13 C -0.670 4.670 14 H 0.068 0.932 15 C -0.168 4.168 16 N -0.561 5.561 17 Si 0.748 3.252 18 H -0.185 1.185 19 H -0.187 1.187 20 H -0.152 1.152 21 C -0.078 4.078 22 C -0.167 4.167 23 H 0.113 0.887 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.236 0.764 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.174 4.984 9.755 31.163 hybrid contribution 1.315 -0.374 0.897 1.635 sum -27.859 4.609 10.652 30.180 Atomic orbital electron populations 1.22902 0.79400 1.03767 1.00769 1.87767 1.21483 1.28089 1.95595 1.23249 0.93504 0.85209 1.01696 1.21320 0.90763 0.93115 0.85230 1.86465 1.75004 1.32209 1.43990 1.21561 0.94246 0.93914 1.03848 1.22013 0.96193 0.98785 0.89902 1.62089 1.10041 1.16247 1.37959 1.22014 0.87487 1.00063 0.96582 1.21373 0.91426 1.00193 0.99850 1.23072 0.99778 1.00314 0.98669 1.83812 1.06779 1.59533 1.48949 1.22342 0.90430 1.30816 1.23429 0.93214 1.25806 0.94916 0.97623 0.98496 1.70036 1.05473 1.42347 1.38209 0.85692 0.80580 0.79250 0.79677 1.18506 1.18729 1.15237 1.22149 0.95402 0.89540 1.00670 1.22131 0.94465 1.01610 0.98538 0.88658 0.93308 0.93219 0.92091 0.91311 0.76399 0.89693 0.88574 0.89731 0.95404 0.89865 0.95149 0.91155 0.90533 0.91410 0.91969 0.91385 0.90475 0.95486 0.90170 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.16 9.59 -139.81 -1.34 -7.50 16 3 C 0.04 0.54 5.06 71.98 0.36 0.91 16 4 C 0.14 2.26 0.80 -10.71 -0.01 2.25 16 5 O -0.57 -11.03 11.84 -139.81 -1.66 -12.69 16 6 C -0.10 -1.54 5.11 30.65 0.16 -1.39 16 7 C 0.06 1.18 5.29 86.33 0.46 1.63 16 8 N -0.54 -12.43 4.81 -896.37 -4.31 -16.74 16 9 C 0.07 1.76 5.27 86.30 0.46 2.21 16 10 C -0.09 -2.73 4.47 30.59 0.14 -2.60 16 11 C -0.07 -2.71 5.67 71.98 0.41 -2.30 16 12 S -0.22 -10.72 19.41 -56.49 -1.10 -11.81 16 13 C -0.52 -31.37 10.04 67.95 0.68 -30.69 16 14 H 0.05 3.25 8.03 -2.91 -0.02 3.22 16 15 C 0.04 2.16 5.50 84.86 0.47 2.62 16 16 N -0.92 -57.51 13.97 21.65 0.30 -57.21 16 17 Si 0.93 44.66 27.74 68.60 1.90 46.57 16 18 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.23 -10.63 6.74 99.48 0.67 -9.96 16 21 C 0.05 1.14 4.71 86.33 0.41 1.55 16 22 C -0.13 -2.39 4.90 30.65 0.15 -2.24 16 23 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.39 6.08 8.57 -74.05 -0.63 5.44 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 32 H 0.03 0.65 7.76 -2.39 -0.02 0.63 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.07 2.14 6.21 -2.39 -0.01 2.13 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 38 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 39 H 0.28 15.87 8.31 -92.71 -0.77 15.09 16 40 H 0.08 1.88 5.81 -2.38 -0.01 1.86 16 41 H 0.03 0.68 7.76 -2.39 -0.02 0.66 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.41 7.77 -2.39 -0.02 1.39 16 Total: -1.00 -68.63 350.27 -0.97 -69.61 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.30 Total: 16.30 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 4.92 Total: -26.52 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -4.01 Total: -73.95 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -3.00 Total: -20.19 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.10 Total: -11.81 kcal Total: -68.63 -0.97 -69.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336704655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.542 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds