Wall clock time and date at job start Tue Mar 31 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 117.00082 * 2 1 4 4 C 1.38727 * 120.05361 * 359.73382 * 3 2 1 5 5 C 1.38154 * 119.94337 * 179.73919 * 4 3 2 6 6 C 1.38268 * 120.05139 * 0.51088 * 5 4 3 7 7 C 1.50693 * 119.94068 * 179.74527 * 6 5 4 8 8 C 1.50706 * 112.84949 * 236.86953 * 7 6 5 9 9 O 1.21294 * 120.00362 * 244.18875 * 8 7 6 10 10 N 1.34777 * 119.99471 * 64.19015 * 8 7 6 11 11 C 1.46504 * 120.00278 * 5.45517 * 10 8 7 12 12 C 1.37099 * 119.99612 * 185.45921 * 10 8 7 13 13 H 1.08002 * 120.00099 * 7.45458 * 12 10 8 14 14 C 1.38948 * 119.99853 * 187.45460 * 12 10 8 15 15 N 1.31420 * 120.00148 * 7.62181 * 14 12 10 16 16 Si 1.86796 * 120.00129 * 187.62175 * 14 12 10 17 17 H 1.48497 * 109.47373 * 89.99981 * 16 14 12 18 18 H 1.48510 * 109.47095 * 209.99980 * 16 14 12 19 19 H 1.48503 * 109.47351 * 329.99666 * 16 14 12 20 20 C 1.53787 * 113.61500 * 105.68122 * 7 6 5 21 21 C 1.53957 * 87.01832 * 220.04390 * 20 7 6 22 22 C 1.53775 * 113.61998 * 8.06828 * 7 6 5 23 23 C 1.38263 * 120.11302 * 359.75921 * 6 5 4 24 24 C 1.38146 * 120.05830 * 359.97438 * 23 6 5 25 25 H 1.08999 * 109.46800 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46305 * 299.99430 * 1 2 3 27 27 H 1.08993 * 109.46909 * 59.99443 * 1 2 3 28 28 H 1.07996 * 120.03143 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.97587 * 180.27570 * 5 4 3 30 30 H 1.09002 * 109.46680 * 355.08981 * 11 10 8 31 31 H 1.08996 * 109.46825 * 115.09323 * 11 10 8 32 32 H 1.08997 * 109.46795 * 235.09043 * 11 10 8 33 33 H 0.96996 * 119.99984 * 180.02562 * 15 14 12 34 34 H 1.08996 * 113.61102 * 334.56204 * 20 7 6 35 35 H 1.09000 * 113.61735 * 105.46545 * 20 7 6 36 36 H 1.08999 * 113.53778 * 270.81269 * 21 20 7 37 37 H 1.09001 * 113.74293 * 139.93793 * 21 20 7 38 38 H 1.08994 * 113.61937 * 254.53462 * 22 7 6 39 39 H 1.09011 * 113.61036 * 25.35072 * 22 7 6 40 40 H 1.07993 * 119.97496 * 179.97438 * 23 6 5 41 41 H 1.08003 * 120.03352 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2916 2.3750 -0.0056 5 6 1.9212 3.6048 -0.0001 6 6 3.3020 3.6758 0.0002 7 6 3.9861 5.0185 0.0004 8 6 4.9284 5.1953 -1.1624 9 8 6.1179 5.3266 -0.9646 10 7 4.4493 5.2076 -2.4221 11 6 3.0036 5.1694 -2.6564 12 6 5.3149 5.2557 -3.4842 13 1 6.3781 5.1625 -3.3190 14 6 4.8242 5.4245 -4.7731 15 7 3.5505 5.6875 -4.9622 16 14 5.9749 5.2777 -6.2372 17 1 6.0081 3.8675 -6.7014 18 1 5.4900 6.1496 -7.3373 19 1 7.3414 5.6995 -5.8372 20 6 4.6048 5.3945 1.3572 21 6 4.1001 6.8260 1.0998 22 6 3.0229 6.2007 0.1979 23 6 4.0562 2.5169 0.0001 24 6 3.4315 1.2848 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2131 2.3201 -0.0103 29 1 1.3344 4.5114 0.0000 30 1 2.4847 5.0458 -1.7058 31 1 2.6868 6.1011 -3.1250 32 1 2.7640 4.3328 -3.3127 33 1 3.2080 5.8049 -5.8620 34 1 4.1242 4.9081 2.2060 35 1 5.6914 5.3111 1.3798 36 1 4.8137 7.4487 0.5601 37 1 3.6970 7.3153 1.9865 38 1 2.8341 6.7672 -0.7139 39 1 2.1082 5.9348 0.7280 40 1 5.1346 2.5749 0.0000 41 1 4.0209 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337553220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:34 Heat of formation + Delta-G solvation = -3.877415 kcal Electronic energy + Delta-G solvation = -23880.644608 eV Core-core repulsion = 20534.631988 eV Total energy + Delta-G solvation = -3346.012619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61050 -39.41187 -37.14740 -36.26511 -34.58561 -31.56911 -30.89654 -30.20354 -27.55125 -26.48185 -25.65885 -25.03608 -23.87820 -22.24530 -21.30198 -20.45013 -18.05578 -17.85632 -16.88449 -16.40628 -15.81235 -15.66454 -15.22792 -14.90425 -14.49639 -14.14596 -13.75690 -13.54010 -13.44534 -13.27410 -12.77108 -12.60413 -12.09867 -11.86855 -11.85610 -11.68707 -11.47905 -11.34152 -10.98109 -10.87251 -10.73450 -10.62023 -10.39124 -10.28590 -10.07961 -9.92639 -9.76134 -9.01896 -8.70965 -8.44166 -7.78079 -7.70247 -6.18967 -3.77462 1.62031 1.68286 3.17474 3.26099 3.31813 3.36646 3.86612 4.01311 4.13954 4.75137 4.91915 5.00995 5.05792 5.10468 5.11392 5.13716 5.20588 5.30428 5.39703 5.39766 5.61016 5.70457 5.71005 5.94064 6.00856 6.02795 6.14649 6.27954 6.31612 6.48510 6.53713 6.55405 6.56953 6.64129 6.85514 6.98924 7.01276 7.14529 7.46761 7.54920 7.60578 8.11935 8.53588 9.22843 9.50730 10.04325 10.73878 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.006124 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.823817 B = 4570.963468 C = 5686.642641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.206 4.206 5 C -0.078 4.078 6 C -0.081 4.081 7 C -0.049 4.049 8 C 0.465 3.535 9 O -0.593 6.593 10 N -0.436 5.436 11 C 0.107 3.893 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.027 3.973 15 N -0.886 5.886 16 Si 0.929 3.071 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.066 4.066 24 C -0.148 4.148 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 -5.412 10.031 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.225 4.225 5 C -0.096 4.096 6 C -0.081 4.081 7 C -0.053 4.053 8 C 0.252 3.748 9 O -0.479 6.479 10 N -0.153 5.153 11 C -0.036 4.036 12 C -0.427 4.427 13 H 0.120 0.880 14 C -0.175 4.175 15 N -0.527 5.527 16 Si 0.756 3.244 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.151 4.151 21 C -0.174 4.174 22 C -0.171 4.171 23 C -0.084 4.084 24 C -0.167 4.167 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.307 -5.499 9.899 14.044 hybrid contribution -0.045 -0.024 -1.047 1.048 sum -8.352 -5.523 8.851 13.364 Atomic orbital electron populations 1.22991 0.78900 1.03449 1.01282 1.86038 1.20997 1.27350 1.89185 1.18969 0.92302 0.83894 0.97918 1.21106 0.99559 0.92285 1.09534 1.20869 0.93904 0.97009 0.97789 1.19466 0.93071 0.94121 1.01469 1.20733 0.96558 0.91593 0.96382 1.19050 0.87974 0.84893 0.82877 1.90491 1.16429 1.56654 1.84284 1.43565 1.06463 1.61173 1.04101 1.21965 0.80504 1.03862 0.97277 1.19807 0.91618 1.46899 0.84333 0.87951 1.25297 0.96614 0.96629 0.98966 1.70128 1.12837 1.47680 1.22085 0.85880 0.80125 0.78148 0.80295 1.20417 1.20926 1.19391 1.22814 1.01966 0.95772 0.94514 1.22785 0.98583 0.96699 0.99333 1.23163 0.96844 0.96474 1.00657 1.20856 1.00302 0.90831 0.96406 1.20351 0.91229 0.98435 1.06636 0.88661 0.92895 0.92691 0.85807 0.85422 0.94520 0.90442 0.92986 0.92472 0.90414 0.89952 0.89899 0.91815 0.90469 0.89749 0.85298 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.46 10.50 -19.43 -0.20 -4.66 16 3 C 0.11 1.74 6.69 -39.22 -0.26 1.47 16 4 C -0.21 -2.93 9.04 -39.43 -0.36 -3.29 16 5 C -0.08 -1.19 7.73 -39.60 -0.31 -1.50 16 6 C -0.08 -1.42 4.00 -104.60 -0.42 -1.83 16 7 C -0.05 -0.93 0.47 -156.00 -0.07 -1.00 16 8 C 0.46 11.37 6.02 -10.98 -0.07 11.31 16 9 O -0.59 -16.40 15.54 5.55 0.09 -16.31 16 10 N -0.44 -11.36 3.03 -122.19 -0.37 -11.73 16 11 C 0.11 2.51 7.43 59.85 0.44 2.95 16 12 C -0.30 -8.45 9.53 -14.93 -0.14 -8.60 16 13 H 0.10 3.03 7.23 -52.49 -0.38 2.65 16 14 C 0.03 0.71 5.39 -17.46 -0.09 0.62 16 15 N -0.89 -23.68 9.65 55.50 0.54 -23.15 16 16 Si 0.93 21.17 29.56 -169.99 -5.02 16.15 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.11 -1.89 7.09 -25.82 -0.18 -2.08 16 21 C -0.14 -2.16 7.81 -25.82 -0.20 -2.36 16 22 C -0.13 -2.17 5.33 -25.92 -0.14 -2.31 16 23 C -0.07 -1.17 9.38 -39.61 -0.37 -1.54 16 24 C -0.15 -2.39 9.99 -39.43 -0.39 -2.78 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 27 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 28 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 29 H 0.13 1.72 5.76 -52.49 -0.30 1.42 16 30 H 0.04 0.72 2.65 -51.93 -0.14 0.59 16 31 H 0.08 1.92 6.70 -51.93 -0.35 1.57 16 32 H 0.05 1.30 7.47 -51.93 -0.39 0.91 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 35 H 0.08 1.53 7.34 -51.93 -0.38 1.14 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.37 6.83 -51.93 -0.35 1.01 16 39 H 0.08 1.13 6.29 -51.92 -0.33 0.80 16 40 H 0.13 2.37 8.05 -52.49 -0.42 1.95 16 41 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -31.52 324.12 -7.08 -38.59 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.41 Total: 5.88 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.57 Total: -9.66 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.17 Total: -34.88 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.12 Total: -20.98 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.52 -7.08 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337553220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.716 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds