Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 117.00082 * 2 1 4 4 C 1.38727 * 120.05361 * 359.73382 * 3 2 1 5 5 C 1.38154 * 119.94337 * 179.73919 * 4 3 2 6 6 C 1.38268 * 120.05139 * 0.51088 * 5 4 3 7 7 C 1.50693 * 119.94068 * 179.74527 * 6 5 4 8 8 C 1.50706 * 112.84949 * 236.86953 * 7 6 5 9 9 O 1.21294 * 120.00362 * 244.18875 * 8 7 6 10 10 N 1.34777 * 119.99471 * 64.19015 * 8 7 6 11 11 C 1.46504 * 120.00278 * 5.45517 * 10 8 7 12 12 C 1.37099 * 119.99612 * 185.45921 * 10 8 7 13 13 H 1.08002 * 120.00099 * 7.45458 * 12 10 8 14 14 C 1.38948 * 119.99853 * 187.45460 * 12 10 8 15 15 N 1.31420 * 120.00148 * 7.62181 * 14 12 10 16 16 Si 1.86796 * 120.00129 * 187.62175 * 14 12 10 17 17 H 1.48497 * 109.47373 * 89.99981 * 16 14 12 18 18 H 1.48510 * 109.47095 * 209.99980 * 16 14 12 19 19 H 1.48503 * 109.47351 * 329.99666 * 16 14 12 20 20 C 1.53787 * 113.61500 * 105.68122 * 7 6 5 21 21 C 1.53957 * 87.01832 * 220.04390 * 20 7 6 22 22 C 1.53775 * 113.61998 * 8.06828 * 7 6 5 23 23 C 1.38263 * 120.11302 * 359.75921 * 6 5 4 24 24 C 1.38146 * 120.05830 * 359.97438 * 23 6 5 25 25 H 1.08999 * 109.46800 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46305 * 299.99430 * 1 2 3 27 27 H 1.08993 * 109.46909 * 59.99443 * 1 2 3 28 28 H 1.07996 * 120.03143 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.97587 * 180.27570 * 5 4 3 30 30 H 1.09002 * 109.46680 * 355.08981 * 11 10 8 31 31 H 1.08996 * 109.46825 * 115.09323 * 11 10 8 32 32 H 1.08997 * 109.46795 * 235.09043 * 11 10 8 33 33 H 0.96996 * 119.99984 * 180.02562 * 15 14 12 34 34 H 1.08996 * 113.61102 * 334.56204 * 20 7 6 35 35 H 1.09000 * 113.61735 * 105.46545 * 20 7 6 36 36 H 1.08999 * 113.53778 * 270.81269 * 21 20 7 37 37 H 1.09001 * 113.74293 * 139.93793 * 21 20 7 38 38 H 1.08994 * 113.61937 * 254.53462 * 22 7 6 39 39 H 1.09011 * 113.61036 * 25.35072 * 22 7 6 40 40 H 1.07993 * 119.97496 * 179.97438 * 23 6 5 41 41 H 1.08003 * 120.03352 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2916 2.3750 -0.0056 5 6 1.9212 3.6048 -0.0001 6 6 3.3020 3.6758 0.0002 7 6 3.9861 5.0185 0.0004 8 6 4.9284 5.1953 -1.1624 9 8 6.1179 5.3266 -0.9646 10 7 4.4493 5.2076 -2.4221 11 6 3.0036 5.1694 -2.6564 12 6 5.3149 5.2557 -3.4842 13 1 6.3781 5.1625 -3.3190 14 6 4.8242 5.4245 -4.7731 15 7 3.5505 5.6875 -4.9622 16 14 5.9749 5.2777 -6.2372 17 1 6.0081 3.8675 -6.7014 18 1 5.4900 6.1496 -7.3373 19 1 7.3414 5.6995 -5.8372 20 6 4.6048 5.3945 1.3572 21 6 4.1001 6.8260 1.0998 22 6 3.0229 6.2007 0.1979 23 6 4.0562 2.5169 0.0001 24 6 3.4315 1.2848 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2131 2.3201 -0.0103 29 1 1.3344 4.5114 0.0000 30 1 2.4847 5.0458 -1.7058 31 1 2.6868 6.1011 -3.1250 32 1 2.7640 4.3328 -3.3127 33 1 3.2080 5.8049 -5.8620 34 1 4.1242 4.9081 2.2060 35 1 5.6914 5.3111 1.3798 36 1 4.8137 7.4487 0.5601 37 1 3.6970 7.3153 1.9865 38 1 2.8341 6.7672 -0.7139 39 1 2.1082 5.9348 0.7280 40 1 5.1346 2.5749 0.0000 41 1 4.0209 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337553220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = -22.680267 kcal Electronic energy + Delta-G solvation = -23881.459961 eV Core-core repulsion = 20534.631988 eV Total energy + Delta-G solvation = -3346.827972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05395 -40.64751 -38.72270 -37.63052 -36.60013 -33.59071 -32.11038 -31.44957 -28.73945 -28.10074 -27.20026 -26.50403 -25.57934 -23.46883 -22.62180 -21.99834 -19.53500 -19.14572 -18.89766 -17.89607 -16.97844 -16.95575 -16.60663 -16.50030 -16.06610 -15.74054 -15.34444 -15.26718 -14.63565 -14.53304 -14.31678 -13.83437 -13.57833 -13.49743 -13.33896 -13.07834 -12.87518 -12.84288 -12.68343 -12.58172 -12.20380 -12.10221 -11.93495 -11.81423 -11.67109 -11.24087 -11.13511 -11.05251 -10.32324 -9.93318 -9.83682 -8.98491 -8.23081 -5.92131 0.40092 0.44356 1.33821 1.37093 1.49663 2.00435 2.24032 2.41202 2.76485 3.05116 3.10067 3.63546 3.75955 3.82910 3.89928 3.94641 4.01189 4.11869 4.37061 4.41321 4.46007 4.54371 4.60688 4.71431 4.74624 4.77870 4.81122 4.85663 5.03997 5.08116 5.14504 5.20210 5.24554 5.29309 5.39380 5.42683 5.49668 5.57444 5.71442 5.80412 6.05248 6.48682 6.49282 7.16422 7.51354 8.05225 8.66466 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.006124 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.823817 B = 4570.963468 C = 5686.642641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.198 4.198 5 C -0.075 4.075 6 C -0.099 4.099 7 C -0.055 4.055 8 C 0.459 3.541 9 O -0.638 6.638 10 N -0.453 5.453 11 C 0.125 3.875 12 C -0.342 4.342 13 H 0.073 0.927 14 C -0.004 4.004 15 N -0.896 5.896 16 Si 0.990 3.010 17 H -0.271 1.271 18 H -0.267 1.267 19 H -0.276 1.276 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.086 4.086 24 C -0.161 4.161 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.271 0.729 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.093 -5.828 10.794 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.070 3.930 4 C -0.216 4.216 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.059 4.059 8 C 0.248 3.752 9 O -0.526 6.526 10 N -0.170 5.170 11 C -0.017 4.017 12 C -0.470 4.470 13 H 0.091 0.909 14 C -0.205 4.205 15 N -0.535 5.535 16 Si 0.813 3.187 17 H -0.196 1.196 18 H -0.192 1.192 19 H -0.201 1.201 20 C -0.146 4.146 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.104 4.104 24 C -0.179 4.179 25 H 0.137 0.863 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.171 0.829 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.606 -5.919 10.664 16.836 hybrid contribution 0.938 0.004 -1.254 1.566 sum -10.668 -5.914 9.410 15.406 Atomic orbital electron populations 1.23364 0.76351 1.05563 1.02427 1.86033 1.23612 1.26627 1.88792 1.19067 0.92022 0.85055 0.96865 1.21469 1.01296 0.91208 1.07619 1.21117 0.92745 0.98617 0.96832 1.19412 0.94237 0.92852 1.03476 1.20630 0.96766 0.93854 0.94601 1.20120 0.88439 0.82737 0.83912 1.90443 1.18932 1.58028 1.85237 1.43787 1.07206 1.61683 1.04318 1.21790 0.79389 1.01931 0.98614 1.19737 0.91071 1.49929 0.86237 0.90927 1.26028 0.98308 0.95510 1.00674 1.70216 1.13594 1.46730 1.23006 0.84991 0.77894 0.78575 0.77233 1.19613 1.19187 1.20077 1.22865 1.00424 0.96820 0.94516 1.22728 0.97752 0.95891 1.00461 1.23232 0.97964 0.94392 1.00467 1.20763 0.99356 0.92126 0.98194 1.20438 0.92426 0.98010 1.07036 0.86343 0.91107 0.92003 0.82233 0.82856 0.90774 0.92041 0.95167 0.91849 0.87119 0.92889 0.93061 0.87752 0.92139 0.85394 0.87817 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.42 10.50 -92.44 -0.97 -9.39 16 3 C 0.12 3.25 6.69 22.51 0.15 3.40 16 4 C -0.20 -4.86 9.04 22.37 0.20 -4.66 16 5 C -0.08 -2.05 7.73 22.26 0.17 -1.88 16 6 C -0.10 -3.39 4.00 -19.85 -0.08 -3.47 16 7 C -0.06 -2.07 0.47 -53.15 -0.03 -2.10 16 8 C 0.46 23.50 6.02 87.66 0.53 24.03 16 9 O -0.64 -37.79 15.54 -3.07 -0.05 -37.84 16 10 N -0.45 -24.56 3.03 -658.88 -1.99 -26.56 16 11 C 0.13 5.91 7.43 127.77 0.95 6.86 16 12 C -0.34 -20.32 9.53 84.04 0.80 -19.52 16 13 H 0.07 4.63 7.23 -2.91 -0.02 4.61 16 14 C 0.00 -0.24 5.39 84.92 0.46 0.22 16 15 N -0.90 -48.15 9.65 21.66 0.21 -47.95 16 16 Si 0.99 44.06 29.56 68.60 2.03 46.09 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C -0.11 -3.58 7.09 31.18 0.22 -3.36 16 21 C -0.13 -3.94 7.81 31.18 0.24 -3.70 16 22 C -0.12 -3.71 5.33 31.12 0.17 -3.54 16 23 C -0.09 -3.12 9.38 22.25 0.21 -2.91 16 24 C -0.16 -5.15 9.99 22.37 0.22 -4.93 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 0.82 7.67 -2.39 -0.02 0.80 16 27 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 28 H 0.16 2.75 6.30 -2.91 -0.02 2.73 16 29 H 0.15 3.33 5.76 -2.91 -0.02 3.31 16 30 H 0.07 2.85 2.65 -2.39 -0.01 2.84 16 31 H 0.06 3.07 6.70 -2.39 -0.02 3.05 16 32 H 0.03 1.52 7.47 -2.39 -0.02 1.50 16 33 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.11 2.91 8.09 -2.39 -0.02 2.89 16 35 H 0.05 2.05 7.34 -2.39 -0.02 2.03 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.04 6.83 -2.39 -0.02 2.03 16 39 H 0.13 2.76 6.29 -2.38 -0.01 2.74 16 40 H 0.10 4.15 8.05 -2.91 -0.02 4.13 16 41 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -73.09 324.12 5.60 -67.49 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.04 Total: 22.34 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 5.33 Total: -14.19 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.78 Total: -74.50 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -1.02 Total: -47.23 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.09 5.60 -67.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337553220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.808 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds