Wall clock time and date at job start Tue Mar 31 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47025 * 2 1 4 4 C 1.36904 * 120.00614 * 278.26367 * 3 2 1 5 5 H 1.07994 * 119.99876 * 178.80872 * 4 3 2 6 6 C 1.39015 * 119.99509 * 358.80442 * 4 3 2 7 7 N 1.31379 * 120.00570 * 13.17996 * 6 4 3 8 8 Si 1.86811 * 119.99868 * 193.17921 * 6 4 3 9 9 H 1.48496 * 109.46743 * 60.00050 * 8 6 4 10 10 H 1.48492 * 109.47150 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46720 * 300.00399 * 8 6 4 12 12 C 1.34784 * 119.99516 * 98.26433 * 3 2 1 13 13 O 1.21617 * 119.99684 * 186.02221 * 12 3 2 14 14 C 1.47495 * 119.99890 * 6.01610 * 12 3 2 15 15 C 1.39815 * 120.08864 * 135.08818 * 14 12 3 16 16 C 1.37666 * 119.90564 * 180.02562 * 15 14 12 17 17 C 1.39038 * 120.09063 * 0.02562 * 16 15 14 18 18 O 1.35717 * 119.90594 * 179.97438 * 17 16 15 19 19 C 1.42904 * 116.99932 * 0.02562 * 18 17 16 20 20 C 1.38992 * 120.18934 * 359.97438 * 17 16 15 21 21 C 1.50693 * 119.95090 * 179.97438 * 20 17 16 22 22 C 1.53005 * 117.49963 * 240.00212 * 21 20 17 23 23 C 1.53002 * 60.03382 * 252.52341 * 22 21 20 24 24 C 1.37699 * 120.09375 * 0.26215 * 20 17 16 25 25 H 1.09000 * 109.46990 * 311.80312 * 1 2 3 26 26 H 1.08998 * 109.47855 * 71.80542 * 1 2 3 27 27 H 1.08997 * 109.47135 * 191.80761 * 1 2 3 28 28 H 1.09005 * 109.46700 * 240.00614 * 2 1 3 29 29 H 1.08997 * 109.47674 * 120.01021 * 2 1 3 30 30 H 0.96998 * 120.00359 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.05461 * 0.02562 * 15 14 12 32 32 H 1.08001 * 119.95751 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47232 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47365 * 300.00541 * 19 18 17 35 35 H 1.09002 * 109.47038 * 60.00051 * 19 18 17 36 36 H 1.08999 * 115.56574 * 25.69590 * 21 20 17 37 37 H 1.09004 * 117.49351 * 145.02360 * 22 21 20 38 38 H 1.08994 * 117.49779 * 0.03252 * 22 21 20 39 39 H 1.09000 * 117.49638 * 107.47562 * 23 22 21 40 40 H 1.08995 * 117.50238 * 252.47872 * 23 22 21 41 41 H 1.08001 * 120.04792 * 179.72165 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0858 2.0835 -1.1732 5 1 2.4276 3.1079 -1.1704 6 6 1.7146 1.4778 -2.3681 7 7 1.0613 0.3380 -2.3518 8 14 2.1445 2.2845 -3.9973 9 1 3.6190 2.4218 -4.1076 10 1 1.6401 1.4452 -5.1136 11 1 1.5157 3.6281 -4.0655 12 6 2.4011 1.9606 1.1552 13 8 2.7021 3.1387 1.1740 14 6 2.4548 1.1657 2.3965 15 6 3.5555 1.2748 3.2516 16 6 3.6020 0.5307 4.4089 17 6 2.5565 -0.3287 4.7276 18 8 2.6065 -1.0609 5.8692 19 6 3.7615 -0.8976 6.6947 20 6 1.4604 -0.4402 3.8803 21 6 0.3305 -1.3737 4.2306 22 6 0.0140 -2.5007 3.2453 23 6 -0.9342 -1.3065 3.3707 24 6 1.4082 0.2968 2.7183 25 1 -0.3633 0.6850 0.7661 26 1 -0.3635 0.3209 -0.9762 27 1 -0.3633 -1.0059 0.2103 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8898 30 1 0.8019 -0.0844 -3.1855 31 1 4.3683 1.9418 3.0047 32 1 4.4521 0.6140 5.0699 33 1 3.6746 -1.5384 7.5720 34 1 4.6529 -1.1728 6.1309 35 1 3.8383 0.1429 7.0104 36 1 0.2065 -1.5843 5.2928 37 1 -0.3182 -3.4527 3.6595 38 1 0.6233 -2.5672 2.3441 39 1 -0.9483 -0.5870 2.5520 40 1 -1.8902 -1.4728 3.8670 41 1 0.5582 0.2063 2.0582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345692142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:05 Heat of formation + Delta-G solvation = 9.879926 kcal Electronic energy + Delta-G solvation = -23718.380766 eV Core-core repulsion = 20372.964709 eV Total energy + Delta-G solvation = -3345.416056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30965 -38.72737 -37.47572 -35.98975 -35.07757 -31.94208 -30.47662 -30.06519 -29.25920 -27.30559 -25.14450 -23.66390 -22.59360 -22.31519 -21.74449 -20.49332 -18.87606 -17.93226 -17.00832 -16.55462 -15.90404 -15.64765 -15.15764 -14.76457 -14.42187 -14.23868 -14.00466 -13.83284 -13.35304 -12.79352 -12.78027 -12.49767 -12.16007 -11.94594 -11.81066 -11.47019 -11.19734 -11.13585 -11.04261 -10.90067 -10.77132 -10.54525 -10.47986 -10.33647 -10.18258 -10.05685 -9.91707 -8.86456 -8.49018 -8.34795 -7.79088 -7.69642 -6.27052 -3.81502 1.55569 1.64395 3.15995 3.22269 3.26645 3.37867 3.63607 4.05703 4.12676 4.38132 4.71559 4.85760 4.97119 5.04161 5.11586 5.12376 5.21920 5.26072 5.34279 5.43551 5.48129 5.67689 5.77415 5.84175 5.92956 6.00699 6.19562 6.30318 6.32599 6.37435 6.57096 6.59529 6.67838 6.73288 6.82801 6.97030 7.03060 7.35560 7.55974 7.57529 7.82076 8.05175 8.50584 9.14823 9.40676 9.97179 10.60179 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.005190 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.226074 B = 5393.533410 C = 6362.638354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.430 5.430 4 C -0.291 4.291 5 H 0.106 0.894 6 C 0.023 3.977 7 N -0.872 5.872 8 Si 0.932 3.068 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.473 3.527 13 O -0.595 6.595 14 C -0.120 4.120 15 C -0.048 4.048 16 C -0.213 4.213 17 C 0.129 3.871 18 O -0.315 6.315 19 C 0.028 3.972 20 C -0.093 4.093 21 C -0.101 4.101 22 C -0.170 4.170 23 C -0.182 4.182 24 C -0.073 4.073 25 H 0.024 0.976 26 H 0.103 0.897 27 H 0.036 0.964 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.267 0.733 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -7.766 12.005 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.146 5.146 4 C -0.419 4.419 5 H 0.123 0.877 6 C -0.178 4.178 7 N -0.513 5.513 8 Si 0.758 3.242 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.262 3.738 13 O -0.482 6.482 14 C -0.124 4.124 15 C -0.067 4.067 16 C -0.232 4.232 17 C 0.084 3.916 18 O -0.228 6.228 19 C -0.068 4.068 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.207 4.207 23 C -0.219 4.219 24 C -0.091 4.091 25 H 0.043 0.957 26 H 0.121 0.879 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.233 -7.471 11.878 14.034 hybrid contribution 0.420 0.352 -0.637 0.841 sum 0.653 -7.119 11.241 13.322 Atomic orbital electron populations 1.22431 0.96752 0.98197 1.03673 1.22036 0.94608 0.83428 1.01605 1.43780 1.53006 1.12036 1.05775 1.19820 1.40733 0.98442 0.82906 0.87664 1.25292 0.96116 0.96606 0.99763 1.70050 1.36267 1.17861 1.27141 0.85898 0.79092 0.78853 0.80308 1.19944 1.20874 1.19889 1.17737 0.85868 0.87220 0.82979 1.90603 1.56244 1.15783 1.85591 1.20130 0.95728 0.99099 0.97451 1.20927 0.97128 0.96470 0.92176 1.21032 0.99728 1.01999 1.00419 1.18838 0.94302 0.92110 0.86399 1.85993 1.42637 1.62495 1.31705 1.23006 0.87606 1.02065 0.94088 1.18342 0.94445 1.01525 0.95041 1.20745 0.94502 0.99366 0.97300 1.23014 1.03288 0.93046 1.01355 1.23152 0.93855 1.01794 1.03104 1.21791 0.99191 0.93146 0.94994 0.95742 0.87901 0.94520 0.86641 0.94304 0.92224 0.85425 0.85547 0.88655 0.92780 0.92808 0.87003 0.88847 0.88422 0.88024 0.88711 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.18 37.16 0.30 -2.90 16 2 C 0.11 2.41 4.88 -4.04 -0.02 2.39 16 3 N -0.43 -11.13 2.64 -116.01 -0.31 -11.43 16 4 C -0.29 -8.00 9.49 -15.00 -0.14 -8.14 16 5 H 0.11 3.05 7.20 -52.49 -0.38 2.67 16 6 C 0.02 0.59 5.32 -17.46 -0.09 0.50 16 7 N -0.87 -21.46 7.27 55.50 0.40 -21.06 16 8 Si 0.93 20.23 29.57 -169.99 -5.03 15.21 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 C 0.47 12.20 7.22 -12.48 -0.09 12.11 16 13 O -0.60 -17.29 16.57 5.26 0.09 -17.20 16 14 C -0.12 -2.58 5.13 -104.96 -0.54 -3.12 16 15 C -0.05 -0.89 9.68 -39.20 -0.38 -1.27 16 16 C -0.21 -3.33 9.01 -39.49 -0.36 -3.69 16 17 C 0.13 2.04 6.67 -39.01 -0.26 1.78 16 18 O -0.31 -4.29 9.65 -18.86 -0.18 -4.48 16 19 C 0.03 0.26 9.81 101.05 0.99 1.25 16 20 C -0.09 -1.56 5.62 -104.54 -0.59 -2.14 16 21 C -0.10 -1.44 5.74 -91.73 -0.53 -1.96 16 22 C -0.17 -2.20 10.16 -26.73 -0.27 -2.47 16 23 C -0.18 -2.41 9.86 -26.69 -0.26 -2.67 16 24 C -0.07 -1.39 6.62 -39.20 -0.26 -1.65 16 25 H 0.02 0.50 6.32 -51.93 -0.33 0.17 16 26 H 0.10 2.41 5.81 -51.93 -0.30 2.11 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.12 2.82 5.76 -51.93 -0.30 2.52 16 29 H 0.04 0.82 4.97 -51.93 -0.26 0.56 16 30 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 31 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.13 1.57 6.28 -52.49 -0.33 1.24 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 35 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 36 H 0.11 1.49 7.76 -51.93 -0.40 1.09 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.10 1.49 5.57 -51.93 -0.29 1.20 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.15 2.88 1.79 -52.49 -0.09 2.79 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -30.11 324.24 -7.78 -37.89 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.15 Total: 8.17 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -2.49 Total: -11.98 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.10 Total: -32.49 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.09 Total: -21.68 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.11 -7.78 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345692142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.768 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds