Wall clock time and date at job start Tue Mar 31 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47025 * 2 1 4 4 C 1.36904 * 120.00614 * 278.26367 * 3 2 1 5 5 H 1.07994 * 119.99876 * 178.80872 * 4 3 2 6 6 C 1.39015 * 119.99509 * 358.80442 * 4 3 2 7 7 N 1.31379 * 120.00570 * 13.17996 * 6 4 3 8 8 Si 1.86811 * 119.99868 * 193.17921 * 6 4 3 9 9 H 1.48496 * 109.46743 * 60.00050 * 8 6 4 10 10 H 1.48492 * 109.47150 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46720 * 300.00399 * 8 6 4 12 12 C 1.34784 * 119.99516 * 98.26433 * 3 2 1 13 13 O 1.21617 * 119.99684 * 186.02221 * 12 3 2 14 14 C 1.47495 * 119.99890 * 6.01610 * 12 3 2 15 15 C 1.39815 * 120.08864 * 135.08818 * 14 12 3 16 16 C 1.37666 * 119.90564 * 180.02562 * 15 14 12 17 17 C 1.39038 * 120.09063 * 0.02562 * 16 15 14 18 18 O 1.35717 * 119.90594 * 179.97438 * 17 16 15 19 19 C 1.42904 * 116.99932 * 0.02562 * 18 17 16 20 20 C 1.38992 * 120.18934 * 359.97438 * 17 16 15 21 21 C 1.50693 * 119.95090 * 179.97438 * 20 17 16 22 22 C 1.53005 * 117.49963 * 240.00212 * 21 20 17 23 23 C 1.53002 * 60.03382 * 252.52341 * 22 21 20 24 24 C 1.37699 * 120.09375 * 0.26215 * 20 17 16 25 25 H 1.09000 * 109.46990 * 311.80312 * 1 2 3 26 26 H 1.08998 * 109.47855 * 71.80542 * 1 2 3 27 27 H 1.08997 * 109.47135 * 191.80761 * 1 2 3 28 28 H 1.09005 * 109.46700 * 240.00614 * 2 1 3 29 29 H 1.08997 * 109.47674 * 120.01021 * 2 1 3 30 30 H 0.96998 * 120.00359 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.05461 * 0.02562 * 15 14 12 32 32 H 1.08001 * 119.95751 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47232 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47365 * 300.00541 * 19 18 17 35 35 H 1.09002 * 109.47038 * 60.00051 * 19 18 17 36 36 H 1.08999 * 115.56574 * 25.69590 * 21 20 17 37 37 H 1.09004 * 117.49351 * 145.02360 * 22 21 20 38 38 H 1.08994 * 117.49779 * 0.03252 * 22 21 20 39 39 H 1.09000 * 117.49638 * 107.47562 * 23 22 21 40 40 H 1.08995 * 117.50238 * 252.47872 * 23 22 21 41 41 H 1.08001 * 120.04792 * 179.72165 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0858 2.0835 -1.1732 5 1 2.4276 3.1079 -1.1704 6 6 1.7146 1.4778 -2.3681 7 7 1.0613 0.3380 -2.3518 8 14 2.1445 2.2845 -3.9973 9 1 3.6190 2.4218 -4.1076 10 1 1.6401 1.4452 -5.1136 11 1 1.5157 3.6281 -4.0655 12 6 2.4011 1.9606 1.1552 13 8 2.7021 3.1387 1.1740 14 6 2.4548 1.1657 2.3965 15 6 3.5555 1.2748 3.2516 16 6 3.6020 0.5307 4.4089 17 6 2.5565 -0.3287 4.7276 18 8 2.6065 -1.0609 5.8692 19 6 3.7615 -0.8976 6.6947 20 6 1.4604 -0.4402 3.8803 21 6 0.3305 -1.3737 4.2306 22 6 0.0140 -2.5007 3.2453 23 6 -0.9342 -1.3065 3.3707 24 6 1.4082 0.2968 2.7183 25 1 -0.3633 0.6850 0.7661 26 1 -0.3635 0.3209 -0.9762 27 1 -0.3633 -1.0059 0.2103 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8898 30 1 0.8019 -0.0844 -3.1855 31 1 4.3683 1.9418 3.0047 32 1 4.4521 0.6140 5.0699 33 1 3.6746 -1.5384 7.5720 34 1 4.6529 -1.1728 6.1309 35 1 3.8383 0.1429 7.0104 36 1 0.2065 -1.5843 5.2928 37 1 -0.3182 -3.4527 3.6595 38 1 0.6233 -2.5672 2.3441 39 1 -0.9483 -0.5870 2.5520 40 1 -1.8902 -1.4728 3.8670 41 1 0.5582 0.2063 2.0582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345692142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:05 Heat of formation + Delta-G solvation = -6.739919 kcal Electronic energy + Delta-G solvation = -23719.101456 eV Core-core repulsion = 20372.964709 eV Total energy + Delta-G solvation = -3346.136747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67483 -40.34831 -38.67548 -37.43365 -36.91788 -33.86469 -31.87808 -31.61351 -30.90024 -28.27062 -27.00592 -24.92146 -24.20763 -23.74539 -23.04011 -21.84570 -20.43539 -19.10543 -18.88917 -18.25262 -17.26070 -16.85849 -16.62635 -16.10994 -15.88545 -15.87189 -15.58467 -15.31441 -14.82804 -14.39226 -14.27530 -13.88679 -13.64430 -13.45611 -13.09913 -12.94031 -12.78887 -12.65302 -12.59485 -12.27020 -12.14909 -12.04380 -11.98564 -11.76168 -11.71650 -11.58445 -11.16899 -10.80035 -10.45609 -9.85047 -9.64415 -9.02874 -8.22870 -5.87586 0.12284 0.29063 1.39710 1.42474 1.52218 1.98320 2.25360 2.35484 2.63704 3.02719 3.12449 3.18266 3.56928 3.78848 3.91803 4.04819 4.12699 4.20472 4.31429 4.41876 4.45614 4.47197 4.48956 4.59028 4.78494 4.81907 4.86653 4.91054 4.94430 5.06858 5.10147 5.12980 5.25161 5.32221 5.36613 5.43492 5.54578 5.60056 5.68049 5.98361 6.05004 6.41885 6.52943 7.14027 7.43738 8.00181 8.61729 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.005190 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.226074 B = 5393.533410 C = 6362.638354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.112 3.888 3 N -0.437 5.437 4 C -0.342 4.342 5 H 0.074 0.926 6 C 0.001 3.999 7 N -0.868 5.868 8 Si 0.993 3.007 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.277 1.277 12 C 0.458 3.542 13 O -0.646 6.646 14 C -0.155 4.155 15 C -0.058 4.058 16 C -0.201 4.201 17 C 0.142 3.858 18 O -0.317 6.317 19 C 0.014 3.986 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.160 4.160 23 C -0.183 4.183 24 C -0.078 4.078 25 H 0.020 0.980 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.275 0.725 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -10.300 13.634 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.010 4.010 3 N -0.153 5.153 4 C -0.470 4.470 5 H 0.092 0.908 6 C -0.200 4.200 7 N -0.507 5.507 8 Si 0.816 3.184 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.202 1.202 12 C 0.249 3.751 13 O -0.537 6.537 14 C -0.158 4.158 15 C -0.077 4.077 16 C -0.220 4.220 17 C 0.095 3.905 18 O -0.230 6.230 19 C -0.080 4.080 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.197 4.197 23 C -0.219 4.219 24 C -0.096 4.096 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.096 -10.065 13.517 16.853 hybrid contribution 0.528 1.038 -1.005 1.538 sum 0.432 -9.027 12.512 15.435 Atomic orbital electron populations 1.22224 0.95385 0.99849 1.02086 1.22028 0.95603 0.81896 1.01475 1.43990 1.52841 1.12916 1.05533 1.19708 1.44294 0.98213 0.84760 0.90769 1.25968 0.95015 0.97191 1.01862 1.70142 1.34533 1.17705 1.28320 0.85014 0.78527 0.78056 0.76785 1.20146 1.18767 1.20247 1.18506 0.85055 0.87170 0.84364 1.90529 1.58424 1.18062 1.86701 1.19882 0.98289 1.01040 0.96601 1.20986 0.96419 0.97235 0.93094 1.21298 1.00813 1.00507 0.99346 1.18929 0.93480 0.91248 0.86806 1.86010 1.44648 1.61565 1.30787 1.23417 0.86492 1.03654 0.94453 1.18594 0.95736 1.01220 0.94192 1.20812 0.94043 0.99684 0.98311 1.23083 1.02417 0.93846 1.00351 1.23200 0.94701 1.01562 1.02465 1.21679 0.98380 0.93366 0.96197 0.96082 0.90288 0.91393 0.88328 0.92652 0.91409 0.86034 0.81870 0.85699 0.91721 0.91781 0.85540 0.86175 0.89715 0.89925 0.86335 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 8.18 71.98 0.59 -5.24 16 2 C 0.11 5.22 4.88 86.38 0.42 5.65 16 3 N -0.44 -23.90 2.64 -639.19 -1.69 -25.58 16 4 C -0.34 -19.86 9.49 84.09 0.80 -19.07 16 5 H 0.07 4.65 7.20 -2.91 -0.02 4.63 16 6 C 0.00 0.07 5.32 84.95 0.45 0.53 16 7 N -0.87 -42.94 7.27 21.67 0.16 -42.78 16 8 Si 0.99 42.02 29.57 68.60 2.03 44.05 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.46 25.17 7.22 86.68 0.63 25.80 16 13 O -0.65 -40.42 16.57 -4.09 -0.07 -40.48 16 14 C -0.15 -6.87 5.13 -20.08 -0.10 -6.97 16 15 C -0.06 -2.21 9.68 22.52 0.22 -1.99 16 16 C -0.20 -5.90 9.01 22.33 0.20 -5.70 16 17 C 0.14 4.14 6.67 22.64 0.15 4.29 16 18 O -0.32 -7.44 9.65 -90.39 -0.87 -8.31 16 19 C 0.01 0.20 9.81 113.37 1.11 1.31 16 20 C -0.10 -3.09 5.62 -19.81 -0.11 -3.21 16 21 C -0.11 -2.85 5.74 -11.51 -0.07 -2.92 16 22 C -0.16 -3.67 10.16 30.60 0.31 -3.36 16 23 C -0.18 -4.41 9.86 30.62 0.30 -4.11 16 24 C -0.08 -2.98 6.62 22.52 0.15 -2.83 16 25 H 0.02 0.88 6.32 -2.39 -0.02 0.87 16 26 H 0.08 3.74 5.81 -2.39 -0.01 3.73 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.10 4.91 5.76 -2.38 -0.01 4.89 16 29 H 0.06 2.38 4.97 -2.39 -0.01 2.37 16 30 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 31 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.16 3.48 6.28 -2.91 -0.02 3.46 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 35 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 36 H 0.13 2.91 7.76 -2.39 -0.02 2.89 16 37 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.08 2.34 5.57 -2.39 -0.01 2.33 16 40 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.15 5.65 1.79 -2.91 -0.01 5.65 16 Total: -1.00 -69.46 324.24 5.67 -63.79 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 1.06 Total: 27.14 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.05 Total: -17.82 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -1.53 Total: -68.36 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.94 Total: -48.79 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.46 5.67 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345692142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.047 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds