Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99688 * 2 1 4 4 C 1.38759 * 120.05657 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94261 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05836 * 359.97166 * 5 4 3 7 7 C 1.38241 * 120.11015 * 0.30563 * 6 5 4 8 8 C 1.50702 * 119.97227 * 179.72421 * 7 6 5 9 9 C 1.50698 * 115.55031 * 209.55401 * 8 7 6 10 10 O 1.21284 * 119.99926 * 246.01858 * 9 8 7 11 11 N 1.34779 * 120.00273 * 66.01614 * 9 8 7 12 12 C 1.46501 * 119.99585 * 5.56290 * 11 9 8 13 13 C 1.46499 * 120.00228 * 185.55955 * 11 9 8 14 14 C 1.50703 * 109.46621 * 90.00105 * 13 11 9 15 15 H 1.07992 * 120.00222 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99840 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00050 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99990 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47438 * 90.00094 * 18 16 14 20 20 H 1.48506 * 109.47295 * 210.00512 * 18 16 14 21 21 H 1.48504 * 109.47168 * 330.00111 * 18 16 14 22 22 C 1.53001 * 117.50051 * 63.87689 * 8 7 6 23 23 C 1.53005 * 117.49712 * 355.21825 * 8 7 6 24 24 C 1.38171 * 120.05702 * 359.44008 * 7 6 5 25 25 H 1.08998 * 109.46842 * 60.00579 * 1 2 3 26 26 H 1.09003 * 109.46646 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47725 * 300.00003 * 1 2 3 28 28 H 1.07999 * 120.02366 * 359.95633 * 4 3 2 29 29 H 1.08007 * 119.97173 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.94387 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.46815 * 84.78786 * 12 11 9 32 32 H 1.09002 * 109.46742 * 204.78112 * 12 11 9 33 33 H 1.08996 * 109.47340 * 324.78581 * 12 11 9 34 34 H 1.08995 * 109.47445 * 210.00425 * 13 11 9 35 35 H 1.09004 * 109.47299 * 330.00826 * 13 11 9 36 36 H 0.96996 * 120.00450 * 179.97438 * 17 16 14 37 37 H 1.09001 * 117.49866 * 0.02562 * 22 8 7 38 38 H 1.08999 * 117.49732 * 145.01989 * 22 8 7 39 39 H 1.09000 * 117.49831 * 214.97837 * 23 8 7 40 40 H 1.09000 * 117.50045 * 359.97438 * 23 8 7 41 41 H 1.07993 * 120.02881 * 180.29522 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3017 3.6759 0.0017 7 6 4.0558 2.5173 -0.0036 8 6 5.5606 2.5984 -0.0080 9 6 6.2713 1.4541 -0.6837 10 8 6.9615 0.6993 -0.0320 11 7 6.1397 1.2694 -2.0123 12 6 5.4070 2.2486 -2.8189 13 6 6.7294 0.0895 -2.6498 14 6 5.7269 -1.0356 -2.6489 15 1 4.7483 -0.8866 -2.2171 16 6 6.0587 -2.2551 -3.2003 17 7 7.2502 -2.4364 -3.7266 18 14 4.8158 -3.6495 -3.1998 19 1 4.0035 -3.5890 -4.4414 20 1 5.5307 -4.9498 -3.1388 21 1 3.9252 -3.5185 -2.0187 22 6 6.2377 3.2301 1.2100 23 6 6.1929 3.9873 -0.1196 24 6 3.4310 1.2849 0.0012 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3203 -0.0017 29 1 1.3337 4.5115 0.0000 30 1 3.7920 4.6382 0.0025 31 1 6.0767 3.0613 -3.1005 32 1 5.0244 1.7652 -3.7179 33 1 4.5751 2.6477 -2.2387 34 1 7.0043 0.3305 -3.6766 35 1 7.6185 -0.2156 -2.0978 36 1 7.4839 -3.2943 -4.1142 37 1 5.5947 3.5866 2.0147 38 1 7.1973 2.8181 1.5224 39 1 7.1230 4.0731 -0.6814 40 1 5.5204 4.8422 -0.1903 41 1 4.0206 0.3801 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350078422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -13.226645 kcal Electronic energy + Delta-G solvation = -23580.872822 eV Core-core repulsion = 20234.454790 eV Total energy + Delta-G solvation = -3346.418032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49622 -39.31781 -37.47082 -35.80137 -34.70665 -32.50037 -31.03317 -29.78928 -27.93199 -27.31236 -25.90014 -24.37732 -22.84439 -22.72682 -21.85817 -20.69678 -18.56966 -17.51749 -16.47548 -16.32823 -16.11345 -15.71360 -15.66969 -15.31132 -14.90837 -14.34116 -14.06806 -13.66305 -13.53212 -13.18009 -12.80977 -12.51383 -12.19529 -12.07676 -11.88528 -11.84058 -11.75612 -11.32806 -11.21085 -11.07826 -10.91092 -10.83032 -10.56008 -10.42968 -10.33772 -10.09069 -9.57638 -8.90666 -8.55244 -8.38913 -8.10413 -7.57346 -5.99824 -4.04192 1.34088 1.53317 3.27816 3.32072 3.33931 3.40229 3.47687 3.67123 3.90647 4.18501 4.49382 4.62330 4.80858 4.95838 5.00532 5.05596 5.09590 5.11216 5.14209 5.29334 5.34813 5.43440 5.64409 5.67129 5.68685 5.84218 5.87095 5.97691 6.03131 6.13631 6.21939 6.32452 6.40714 6.47011 6.67590 6.83164 7.11088 7.48521 7.50488 7.60355 7.97433 8.27980 8.46474 8.94610 9.13158 9.61040 11.08232 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.007033 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.069273 B = 3980.454482 C = 5667.326589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.134 3.866 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.159 4.159 7 C 0.006 3.994 8 C -0.119 4.119 9 C 0.544 3.456 10 O -0.538 6.538 11 N -0.591 5.591 12 C 0.084 3.916 13 C 0.244 3.756 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.136 4.136 23 C -0.158 4.158 24 C -0.131 4.131 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 14.693 6.452 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.089 3.911 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.177 4.177 7 C 0.006 3.994 8 C -0.122 4.122 9 C 0.330 3.670 10 O -0.415 6.415 11 N -0.322 5.322 12 C -0.060 4.060 13 C 0.125 3.875 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.173 4.173 23 C -0.195 4.195 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.230 13.926 6.662 19.090 hybrid contribution -1.083 -0.771 -0.249 1.353 sum -12.313 13.155 6.413 19.126 Atomic orbital electron populations 1.23032 0.78776 1.03869 1.00990 1.86171 1.21018 1.26845 1.88463 1.18958 0.92092 0.84184 0.95904 1.21177 0.99751 0.92425 1.10047 1.20782 0.94227 0.96756 0.98133 1.20867 0.93612 0.97753 1.05495 1.18484 0.91515 0.92447 0.96991 1.20254 0.91334 0.95578 1.05031 1.19037 0.81329 0.84196 0.82472 1.90666 1.40380 1.46444 1.64055 1.48015 1.53185 1.24648 1.06375 1.21673 0.95803 0.91949 0.96578 1.19334 0.94709 0.80720 0.92741 1.21456 1.00077 0.96483 1.38309 0.92288 1.24917 0.95428 0.98422 0.95241 1.69935 1.19601 1.24647 1.39294 0.86536 0.81280 0.81488 0.78459 1.20700 1.21119 1.19635 1.23040 1.02491 1.00942 0.90866 1.23158 1.02540 0.92874 1.00932 1.20405 0.91566 0.98819 1.04140 0.92734 0.88356 0.92890 0.85735 0.85895 0.85682 0.93921 0.90951 0.92103 0.94965 0.93727 0.92776 0.88078 0.87469 0.88050 0.87739 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.31 -5.07 10.50 -19.42 -0.20 -5.28 16 3 C 0.13 2.15 6.69 -39.21 -0.26 1.89 16 4 C -0.22 -2.71 9.04 -39.43 -0.36 -3.07 16 5 C -0.08 -0.92 10.04 -39.61 -0.40 -1.31 16 6 C -0.16 -1.96 9.30 -39.56 -0.37 -2.33 16 7 C 0.01 0.10 3.55 -104.64 -0.37 -0.28 16 8 C -0.12 -1.95 1.37 -156.81 -0.22 -2.16 16 9 C 0.54 11.91 5.75 -10.99 -0.06 11.85 16 10 O -0.54 -14.08 16.26 5.55 0.09 -13.99 16 11 N -0.59 -13.15 2.86 -182.95 -0.52 -13.67 16 12 C 0.08 1.47 10.09 59.85 0.60 2.08 16 13 C 0.24 6.58 5.18 -5.19 -0.03 6.55 16 14 C -0.52 -15.25 9.39 -34.44 -0.32 -15.57 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 22 C -0.14 -1.87 9.73 -26.69 -0.26 -2.13 16 23 C -0.16 -1.95 9.42 -26.69 -0.25 -2.20 16 24 C -0.13 -2.37 9.26 -39.43 -0.37 -2.74 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.13 1.23 5.95 -52.49 -0.31 0.91 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 33 H 0.06 0.98 5.38 -51.93 -0.28 0.70 16 34 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.04 1.35 7.35 -51.93 -0.38 0.97 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.11 1.58 8.00 -51.93 -0.42 1.17 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.00 6.11 -51.93 -0.32 0.68 16 41 H 0.14 2.98 7.33 -52.49 -0.38 2.60 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -34.68 342.42 -7.23 -41.92 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.71 Total: 1.21 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.76 Total: -6.43 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.21 Total: -40.06 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.11 Total: -19.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.68 -7.23 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350078422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.692 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds